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NIHR IBD BioResource: SNP chip data

In order to do recall by genotype, participants have their DNA tested using one the SNP chip arrays from eg. Illumina and Affymetrix (now Thermosfisher). The current iteration is the UK Biobank v2.1 from Thermofisher, which measures ~820k markers.

Description

More detailed information about this field from each metasource.

In order to do recall by genotype, participants have their DNA tested using one the SNP chip arrays from eg. Illumina and Affymetrix (now Thermosfisher). The current iteration is the UK Biobank v2.1 from Thermofisher, which measures ~820k markers.

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Webpage:

https://www.healthdatagateway.org/dataset/27a97f1b-e7ac-4723-87db-0a4d9e3ed4b6

Webpage

More detailed information about this field from each metasource.

https://www.healthdatagateway.org/dataset/27a97f1b-e7ac-4723-87db-0a4d9e3ed4b6

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Licence:

Name: HDR UK Innovation Gateway Access

Licence name

More detailed information about this field from each metasource.

HDR UK Innovation Gateway Access

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

URL: https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

Licence URL

More detailed information about this field from each metasource.

https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Tags:

Tags
More detailed information about this field from each metasource.

IBD
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Crohn's
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

colitis
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

recall
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

SNP chip
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Thermofisher
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

cohort discovery
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

ibd crohn's colitis recall snp chip thermofisher cohort discovery

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NIHR BioResource: SNP chip data

NIHR IBD BioResource: SNP imputation data

SNP chip data can be used to impute many of the (non-rare) SNPs not included on the chips. The NIHR IBD BioResource is using a modified version of the UK Biobank protocol to improve the options for r ...

NIHR BioResource: SNP imputation data

SNP chip data can be used to impute many of the (non-rare) SNPs not included on the chips. The NIHR BioResource is using a modified version of the UK Biobank protocol to improve the options for recal ...

NIHR IBD BioResource: Demographic

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NIHR IBD BioResource: Contact detail

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NIHR IBD BioResource: Sample holding

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NIHR BioResource: Demographic

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NIHR BioResource: Sample holding

NIHR BioResource samples are held at the NIHR National Biosample Centre in Milton Keynes. Metadata on what is available should become available through the UK CRC Tissue Directory, as mandated by Rese ...

NIHR BioResource: Health and Lifestyle Questionnaire

Most NIHR BioResource participants complete a self-report form on recruitment. Typically this contains e.g. height, weight, smoking history and alcohol consumption, but also includes questions relati ...

NIHR BioResource: Contact detail

The NIHR BioResource acquires contact details - name, address, email address, phone/mobile number - from participants at recruitment. This is used to recontact participants to invite them to take part ...

HapMap Project

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NIHR BioResource: Returned datasets

The NIHR BioResource asks those collecting data on participants as part of sample-only or recall studies to offer data for re-use by others. These offers may be taken up in future.

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine