Other names: cavityspace
A database of potential ligand binding sites in the human proteome.
proteomics protein binding sites sequence analysis structure prediction small molecule
POcket Similarity Search Using Multiple-Sketches (PoSSuM) includes all the discovered protein-small molecule binding site pairs with annotations of various types (e.g., UniProt, CATH, SCOP, SCOPe, EC ...
Mutations in Ligand Binding Sites gene DataBase
The Pocketome is an encyclopedia of conformational ensembles of druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry ...
Molecular Modeling of RNA Structure-From Base Pair Analysis in Crystals to Structure Prediction.
Better characterization of binding sites in proteins and the ability to accurately predict their location and energetic properties are major challenges which, if addressed, would have many valuable pr ...
Database of zinc binding sites.
Inferred Biomolecular Interaction Server: protein-protein, ligand- and nucleic acid-binding sites
fPOP (footprinting Pockets Of Proteins) is a database of the protein functional surfaces identified by shape analysis. In this relational database, we collected the spatial patterns of protein binding ...
Metal binding sites, antigen epitopes, and drug binding sites are viral protein hotspots that control how viruses interact with their hosts. Like Google maps organizes and annotates points of interest ...
ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.
Dictionary of binding sites in proteins
A Web Server and Interactive Web Repository of Small Ligand-Protein Binding Sites for Drug Design.
Database of flavors and scents
Function: Rank potential 8-mer, 9-mer, or 10-mer peptides based on a predicted half-time of dissociation to HLA class I molecules. The analysis is based on coefficient tables deduced from the publishe ...
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcrip ...
A3D Database is a database for structure-based protein aggregation predictions for the human proteome
Experimentally-determined binding sites of RNA-binding proteins
ABS: A database of Annotated regulatory Binding Sites from known binding sites identified in promoters of orthologous vertebrate genes.
Disordered Binding Sites (DIBS) is a repository of protein complexes that are formed by ordered and disordered proteins. Intrinsically disordered proteins (IDPs) do not have a stable 3D structure in i ...
The Hormone Receptor Target Binding Loci, HRTBLDb database contains hormone receptor binding regions (binding loci) from in vivo ChIP-based high-throughput experiments as well as in silico, computatio ...