ProBiS-Dock Database

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ProBiS-Dock Database

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:31.789464

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probis-dock_database

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:31.789464

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IBIS

Inferred Biomolecular Interaction Server: protein-protein, ligand- and nucleic acid-binding sites

virusMED

Metal binding sites, antigen epitopes, and drug binding sites are viral protein hotspots that control how viruses interact with their hosts. Like Google maps organizes and annotates points of interest ...

Pocketome: an encyclopedia of small-molecule binding sites in 4D

The Pocketome is an encyclopedia of conformational ensembles of druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry ...

mutLBSgeneDB

Mutations in Ligand Binding Sites gene DataBase

Pocket Similarity Search using Multiple-Sketches

POcket Similarity Search Using Multiple-Sketches (PoSSuM) includes all the discovered protein-small molecule binding site pairs with annotations of various types (e.g., UniProt, CATH, SCOP, SCOPe, EC ...

Disco

Disco Cross Docking Benchmark server for automated pose and ranking prediction of ligand binding.

fPOP

fPOP (footprinting Pockets Of Proteins) is a database of the protein functional surfaces identified by shape analysis. In this relational database, we collected the spatial patterns of protein binding ...

CavitySpace

A database of potential ligand binding sites in the human proteome.

SARS-CoV-2 3D database

This tool is for understanding the coronavirus proteome and evaluating possible drug targets.

ChIPSummitDB

ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.

PDEStrIAn

The database revolves around the protein structure of catalytic PDE domains and the way PDE inhibitors can interact with them. It contains a systematic analysis of all phosphodiesterase (PDE) catalyti ...

LigAsite

Better characterization of binding sites in proteins and the ability to accurately predict their location and energetic properties are major challenges which, if addressed, would have many valuable pr ...

BindingDB database of measured binding affinities

BindingDB enables research by making a growing collection of high-quality, quantitative, protein-ligand binding data findable and usable. Funded by NIGMS/NIH.

PROMISCUOUS

Protein-protein and drug-protein interactions for studies of drug repositioning

CLIPZ

Experimentally-determined binding sites of RNA-binding proteins

Bimas HLA Peptide Binding Predictions

Function: Rank potential 8-mer, 9-mer, or 10-mer peptides based on a predicted half-time of dissociation to HLA class I molecules. The analysis is based on coefficient tables deduced from the publishe ...

ProtMiscuity

a database of promiscuous proteins. Promiscuous behaviour in proteins and enzymes remains a challenging feature to understand the structure-function relationship. Here we present ProtMiscuity, a manu ...

RealVS

Toward Enhancing the Precision of Top Hits in Ligand-Based Virtual Screening of Drug Leads from Large Compound Databases.

StreptomeDB