Machine Learning Techniques for the Prediction of B-Cell and T-Cell Epitopes as Potential Vaccine Targets with a Specific Focus on SARS-CoV-2 Pathogen: A Review. 
 PMID:35215090
                                    
                                
                                    Acid Stripping after Infection Improves the Detection of Viral HLA Class I Natural Ligands Identified by Mass Spectrometry. 
 PMID:34638844
                                    
                                
                                    Molecular insight into the affinity, specificity and cross-reactivity of systematic hepatocellular carcinoma RALT interaction profile with human receptor tyrosine kinases. 
 PMID:34618235
                                    
                                
                                    Prospective Evaluation of Radiotherapy-Induced Immunologic and Genetic Effects in Colorectal Cancer Oligo-Metastatic Patients with Lung-Limited Disease: The PRELUDE-1 Study. 
 PMID:34439390
                                    
                                
                                    T Cell Specificity: A Great Challenge in Chagas Disease. 
 PMID:34267750
                                    
                                
                                    Recent progress on MHC-I epitope prediction in tumor immunotherapy. 
 PMID:34249407
                                    
                                
                                    Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution. 
 PMID:34131696
                                    
                                
                                    Infectious disease mRNA vaccines and a review on epitope prediction for vaccine design. 
 PMID:34089044
                                    
                                
                                    Whole genome deep sequencing analysis of viral quasispecies diversity and evolution in HBeAg seroconverters. 
 PMID:33870157
                                    
                                
                                    Cytotoxic T-lymphocyte elicited vaccine against SARS-CoV-2 employing immunoinformatics framework. 
 PMID:33828130
                                    
                                
                                    Peptide-based therapeutic cancer vaccine: Current trends in clinical application. 
 PMID:33754407
                                    
                                
                                    MHCII3D-Robust Structure Based Prediction of MHC II Binding Peptides. 
 PMID:33374958
                                    
                                
                                    Cytotoxic T-lymphocyte elicited therapeutic vaccine candidate targeting cancer against MAGE-A11 carcinogenic protein. 
 PMID:33169789
                                    
                                
                                    MMP-7 derived peptides with MHC class-I binding motifs from canine mammary tumor tissue elicit strong antigen-specific T-cell responses in BALB/c mice. 
 PMID:32970284
                                    
                                
                                    Point mutation screening of tumor neoantigens and peptide-induced specific cytotoxic T lymphocytes using The Cancer Genome Atlas database. 
 PMID:32934692
                                    
                                
                                    Antigen processing and presentation in cancer immunotherapy. 
 PMID:32859742
                                    
                                
                                    A novel neoantigen discovery approach based on chromatin high order conformation. 
 PMID:32854726
                                    
                                
                                    Vaccine candidate designed against carcinoembryonic antigen-related cell adhesion molecules using immunoinformatics tools. 
 PMID:32720576
                                    
                                
                                    Distinctive germline expression of class I human leukocyte antigen (HLA) alleles and DRB1 heterozygosis predict the outcome of patients with non-small cell lung cancer receiving PD-1/PD-L1 immune checkpoint blockade. 
 PMID:32554614
                                    
                                
                                    Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system. 
 PMID:32453790
                                    
                                
                                    Modulation of Natural HLA-B*27:05 Ligandome by Ankylosing Spondylitis-associated Endoplasmic Reticulum Aminopeptidase 2 (ERAP2). 
 PMID:32265295
                                    
                                
                                    Identification of novel HLA-A0201-restricted T-cell epitopes against thyroid antigens in autoimmune thyroid diseases. 
 PMID:32198668
                                    
                                
                                    Cancer testis antigen Cyclin A1 harbors several HLA-A*02:01-restricted T cell epitopes, which are presented and recognized in vivo. 
 PMID:32157447
                                    
                                
                                    Two unique HLA-A*0201 restricted peptides derived from cyclin E as immunotherapeutic targets in leukemia. 
 PMID:31908357
                                    
                                
                                    Machine Learning for Cancer Immunotherapies Based on Epitope Recognition by T Cell Receptors. 
 PMID:31798635
                                    
                                
                                    Imaging CAR T Cell Trafficking with eDHFR as a PET Reporter Gene. 
 PMID:31668558
                                    
                                
                                    Narrow-Leafed Lupin Main Allergen β-Conglutin (Lup an 1) Detection and Quantification Assessment in Natural and Processed Foods. 
 PMID:31635336
                                    
                                
                                    HLA class I-restricted T cell epitopes isolated and identified from myeloid leukemia cells. 
 PMID:31575892
                                    
                                
                                    Computational approaches for characterizing the tumor immune microenvironment. 
 PMID:31347163
                                    
                                
                                    Generation of IgE-specific cytotoxic T lymphocytes as a novel immunotherapeutic approach for the treatment of allergic asthma. 
 PMID:31317199
                                    
                                
                                    Key Features Relevant to Select Antigens and TCR From the MHC-Mismatched Repertoire to Treat Cancer. 
 PMID:31316521
                                    
                                
                                    MHC-I peptide binding activity assessed by exchange after cleavage of peptide covalently linked to β2-microglobulin. 
 PMID:31201791
                                    
                                
                                    Identification of CD4 and H-2Kd-restricted cytotoxic T lymphocyte epitopes on the human herpesvirus 6B glycoprotein Q1 protein. 
 PMID:30846739
                                    
                                
                                    Neoantigen identification strategies enable personalized immunotherapy in refractory solid tumors. 
 PMID:30835255
                                    
                                
                                    Naturally presented HLA class I-restricted epitopes from the neurotrophic factor S100-β are targets of the autoimmune response in type 1 diabetes. 
 PMID:30817223
                                    
                                
                                    Mutations in Hepatitis D Virus Allow It to Escape Detection by CD8+ T Cells and Evolve at the Population Level. 
 PMID:30768983
                                    
                                
                                    Perspective: The promises of a holistic view of proteins-impact on antibody engineering and drug discovery. 
 PMID:30630879
                                    
                                
                                    Structure-based Methods for Binding Mode and Binding Affinity Prediction for Peptide-MHC Complexes. 
 PMID:30582480
                                    
                                
                                    Association of HLA class I type with prevalence and outcome of patients with acute myeloid leukemia and mutated nucleophosmin. 
 PMID:30557403
                                    
                                
                                    A comprehensive in silico analysis for identification of therapeutic epitopes in HPV16, 18, 31 and 45 oncoproteins. 
 PMID:30356257
                                    
                                
                                    CD8+ Cytotoxic T Lymphocyte Responses and Viral Epitope Escape in Acute HIV-1 Infection. 
 PMID:30059271
                                    
                                
                                    A Mechanistic Model for Predicting Cell Surface Presentation of Competing Peptides by MHC Class I Molecules. 
 PMID:30026743
                                    
                                
                                    Quasispecies characters of hepatitis B virus in immunoprophylaxis failure infants. 
 PMID:29629487
                                    
                                
                                    A Targeted LC-MS Strategy for Low-Abundant HLA Class-I-Presented Peptide Detection Identifies Novel Human Papillomavirus T-Cell Epitopes. 
 PMID:29603667
                                    
                                
                                    Effective screening of T cells recognizing neoantigens and construction of T-cell receptor-engineered T cells. 
 PMID:29541393
                                    
                                
                                    Current progress of immunoinformatics approach harnessed for cellular- and antibody-dependent vaccine design. 
 PMID:29528265
                                    
                                
                                    Fundamentals and Methods for T- and B-Cell Epitope Prediction. 
 PMID:29445754
                                    
                                
                                    Identification of a Novel CD8 T Cell Epitope Derived from Plasmodium berghei Protective Liver-Stage Antigen. 
 PMID:29434602
                                    
                                
                                    In silico epitope mapping and experimental evaluation of the Merozoite Adhesive Erythrocytic Binding Protein (MAEBL) as a malaria vaccine candidate. 
 PMID:29316918
                                    
                                
                                    Longevity of antibody and T-cell responses against outer membrane antigens of Orientia tsutsugamushi in scrub typhus patients. 
 PMID:29259327
                                    
                                
                                    Preclinical and clinical development of neoantigen vaccines. 
 PMID:29253113
                                    
                                
                                    Host genotype and time dependent antigen presentation of viral peptides: predictions from theory. 
 PMID:29084996
                                    
                                
                                    Identification of a HLA-A*0201-restricted immunogenic epitope from the universal tumor antigen DEPDC1. 
 PMID:28919988
                                    
                                
                                    Soluble HLA-associated peptide from PSF1 has a cancer vaccine potency. 
 PMID:28894200
                                    
                                
                                    Tools to define the melanoma-associated immunopeptidome. 
 PMID:28755382
                                    
                                
                                    The Role of Multiscale Protein Dynamics in Antigen Presentation and T Lymphocyte Recognition. 
 PMID:28740497
                                    
                                
                                    Vaccination with High-Affinity Epitopes Impairs Antitumor Efficacy by Increasing PD-1 Expression on CD8+ T Cells. 
 PMID:28634215
                                    
                                
                                    NOG-hIL-4-Tg, a new humanized mouse model for producing tumor antigen-specific IgG antibody by peptide vaccination. 
 PMID:28617827
                                    
                                
                                    Design, development and characterization of ACT017, a humanized Fab that blocks platelet's glycoprotein VI function without causing bleeding risks. 
 PMID:28598281
                                    
                                
                                    ImmunoNodes - graphical development of complex immunoinformatics workflows. 
 PMID:28482806
                                    
                                
                                    Identification and characterization of enhancer agonist human cytotoxic T-cell epitopes of the human papillomavirus type 16 (HPV16) E6/E7. 
 PMID:28389098
                                    
                                
                                    Bioinformatic prediction of the epitopes of Echinococcus granulosus antigen 5. 
 PMID:28357070
                                    
                                
                                    The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design. 
 PMID:28352270
                                    
                                
                                    The Human Leukocyte Antigen (HLA)-B27 Peptidome in Vivo, in Spondyloarthritis-susceptible HLA-B27 Transgenic Rats and the Effect of Erap1 Deletion. 
 PMID:28188227
                                    
                                
                                    Identification of HLA‑A*1101‑restricted cytotoxic T lymphocyte epitopes derived from epidermal growth factor pathway substrate number 8. 
 PMID:27840923
                                    
                                
                                    Discovery of immunodominant T-cell epitopes reveals penton protein as a second immunodominant target in human adenovirus infection. 
 PMID:27717382
                                    
                                
                                    Recent advances in T-cell engineering for use in immunotherapy. 
 PMID:27703664
                                    
                                
                                    Immunogenic FEAT protein circulates in the bloodstream of cancer patients. 
 PMID:27659353
                                    
                                
                                    TepiTool: A Pipeline for Computational Prediction of T Cell Epitope Candidates. 
 PMID:27479659
                                    
                                
                                    Personalized cancer vaccines: Targeting the cancer mutanome. 
 PMID:27449681
                                    
                                
                                    Computational genomics tools for dissecting tumour-immune cell interactions. 
 PMID:27376489
                                    
                                
                                    Human T cell responses to Japanese encephalitis virus in health and disease. 
 PMID:27242166
                                    
                                
                                    Designing string-of-beads vaccines with optimal spacers. 
 PMID:26813686
                                    
                                
                                    Genome-Wide Prediction of Vaccine Candidates for Leishmania major: An Integrated Approach. 
 PMID:26681959
                                    
                                
                                    Immunoinformatics and epitope prediction in the age of genomic medicine. 
 PMID:26589500
                                    
                                
                                    Identification of Four-Jointed Box 1 (FJX1)-Specific Peptides for Immunotherapy of Nasopharyngeal Carcinoma. 
 PMID:26536470
                                    
                                
                                    Novel epitopes identified from efflux pumps of Mycobacterium tuberculosis could induce cytotoxic T lymphocyte response. 
 PMID:26417538
                                    
                                
                                    Identification of Conserved Peptides Comprising Multiple T Cell Epitopes of Matrix 1 Protein in H1N1 Influenza Virus. 
 PMID:26398199
                                    
                                
                                    Carfilzomib enhances natural killer cell-mediated lysis of myeloma linked with decreasing expression of HLA class I. 
 PMID:26323098
                                    
                                
                                    Tumor neoantigens: building a framework for personalized cancer immunotherapy. 
 PMID:26258412
                                    
                                
                                    Anti-hepatitis C virus T-cell immunity in the context of multiple exposures to the virus. 
 PMID:26107956
                                    
                                
                                    Accurate prediction of immunogenic T-cell epitopes from epitope sequences using the genetic algorithm-based ensemble learning. 
 PMID:26020952
                                    
                                
                                    Prediction of CD8+ Epitopes in Leishmania braziliensis Proteins Using EPIBOT: In Silico Search and In Vivo Validation. 
 PMID:25905908
                                    
                                
                                    The HIV-1 antisense protein (ASP) induces CD8 T cell responses during chronic infection. 
 PMID:25809376
                                    
                                
                                    Deciphering complex patterns of class-I HLA-peptide cross-reactivity via hierarchical grouping. 
 PMID:25708537
                                    
                                
                                    Immunogenic peptide discovery in cancer genomes. 
 PMID:25588790
                                    
                                
                                    The use of signal peptide domains as vaccine candidates. 
 PMID:25483491
                                    
                                
                                    Immunogenicity of Multi-Epitope DNA and Peptide Vaccine Candidates Based on Core, E2, NS3 and NS5B HCV Epitopes in BALB/c Mice. 
 PMID:25419219
                                    
                                
                                    Uncovering the peptide-binding specificities of HLA-C: a general strategy to determine the specificity of any MHC class I molecule. 
 PMID:25311805
                                    
                                
                                    A common minimal motif for the ligands of HLA-B*27 class I molecules. 
 PMID:25268942
                                    
                                
                                    Soluble HLA technology as a strategy to evaluate the impact of HLA mismatches. 
 PMID:25254222
                                    
                                
                                    Identification and characterization of a cytotoxic T-lymphocyte agonist epitope of brachyury, a transcription factor involved in epithelial to mesenchymal transition and metastasis. 
 PMID:25186612
                                    
                                
                                    Engineering venom's toxin-neutralizing antibody fragments and its therapeutic potential. 
 PMID:25153256
                                    
                                
                                    A search for novel cancer/testis antigens in lung cancer identifies VCX/Y genes, expanding the repertoire of potential immunotherapeutic targets. 
 PMID:24970476
                                    
                                
                                    Specific targeting of a naturally presented osteosarcoma antigen, papillomavirus binding factor peptide, using an artificial monoclonal antibody. 
 PMID:24962571
                                    
                                
                                    Predicting alloreactivity in transplantation. 
 PMID:24868561
                                    
                                
                                    Hepatitis B splice-generated protein antibodies in Syrian chronic hepatitis B patients: incidence and significance. 
 PMID:24829585
                                    
                                
                                    Can we predict mutant neoepitopes in human cancers for patient-specific vaccine therapy? 
 PMID:24795140
                                    
                                
                                    In vivo immunogenicity of Tax(11-19) epitope in HLA-A2/DTR transgenic mice: implication for dendritic cell-based anti-HTLV-1 vaccine. 
 PMID:24739247
                                    
                                
                                    Integrative immunoinformatics for Mycobacterial diseases in R platform. 
 PMID:24592289
                                    
                                
                                    The impact of viral evolution and frequency of variant epitopes on primary and memory human immunodeficiency virus type 1-specific CD8⁺ T cell responses. 
 PMID:24503065
                                    
                                
                                    DNA vaccines encoding altered peptide ligands for SSX2 enhance epitope-specific CD8+ T-cell immune responses. 
 PMID:24492013
                                    
                                
                                    Results of a randomized phase I gene therapy clinical trial of nononcolytic fowlpox viruses encoding T cell costimulatory molecules. 
 PMID:24484178
                                    
                                
                                    Tumour antigens recognized by T lymphocytes: at the core of cancer immunotherapy. 
 PMID:24457417
                                    
                                
                                    LAPTM4B-35 protein is a weak tumor-associated antigen candidate. 
 PMID:24396432
                                    
                                
                                    A guide to bioinformatics for immunologists. 
 PMID:24363654
                                    
                                
                                    Identification and characterization of agonist epitopes of the MUC1-C oncoprotein. 
 PMID:24233342
                                    
                                
                                    Cancer genome sequencing and its implications for personalized cancer vaccines. 
 PMID:24213133
                                    
                                
                                    Properties of MHC class I presented peptides that enhance immunogenicity. 
 PMID:24204222
                                    
                                
                                    HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity. 
 PMID:24190657
                                    
                                
                                    Sequence analysis of T-cell repertoires in health and disease. 
 PMID:24172704
                                    
                                
                                    HPV16 E5 peptide vaccine in treatment of cervical cancer in vitro and in vivo. 
 PMID:24142729
                                    
                                
                                    Advances in the study of HLA-restricted epitope vaccines. 
 PMID:23955319
                                    
                                
                                    NetMHCstab - predicting stability of peptide-MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery. 
 PMID:23927693
                                    
                                
                                    An analogue peptide from the Cancer/Testis antigen PASD1 induces CD8+ T cell responses against naturally processed peptide. 
 PMID:23882161
                                    
                                
                                    Peptide-based vaccinology: experimental and computational approaches to target hypervariable viruses through the fine characterization of protective epitopes recognized by monoclonal antibodies and the identification of T-cell-activating peptides. 
 PMID:23878584
                                    
                                
                                    Active vaccination with vaccinia virus A33 protects mice against lethal vaccinia and ectromelia viruses but not against cowpoxvirus; elucidation of the specific adaptive immune response. 
 PMID:23842430
                                    
                                
                                    Identification and enhancement of HLA-A2.1-restricted CTL epitopes in a new human cancer antigen-POTE. 
 PMID:23750208
                                    
                                
                                    Molecular epidemiology and phylodynamics of the human respiratory syncytial virus fusion protein in northern Taiwan. 
 PMID:23734183
                                    
                                
                                    Mutated PPP1R3B is recognized by T cells used to treat a melanoma patient who experienced a durable complete tumor regression. 
 PMID:23690473
                                    
                                
                                    A combination of epitope prediction and molecular docking allows for good identification of MHC class I restricted T-cell epitopes. 
 PMID:23666426
                                    
                                
                                    Prime/boost immunization with DNA and adenoviral vectors protects from hepatitis D virus (HDV) infection after simultaneous infection with HDV and woodchuck hepatitis virus. 
 PMID:23637419
                                    
                                
                                    Antigen-stimulated CD4 T cell expansion can be limited by their grazing of peptide-MHC complexes. 
 PMID:23606541
                                    
                                
                                    Natural HLA-B*2705 protein ligands with glutamine as anchor motif: implications for HLA-B27 association with spondyloarthropathy. 
 PMID:23430249
                                    
                                
                                    Measurement of MHC/peptide interactions by gel filtration or monoclonal antibody capture. 
 PMID:23392640
                                    
                                
                                    Prediction of MHC class I binding peptides by a query learning algorithm based on hidden markov models. 
 PMID:23345768
                                    
                                
                                    Fowlpox-based survivin vaccination for malignant mesothelioma therapy. 
 PMID:23335100
                                    
                                
                                    T-cell epitope vaccine design by immunoinformatics. 
 PMID:23303307
                                    
                                
                                    Characterization of novel multiantigenic vaccine candidates with pan-HLA coverage against Mycobacterium tuberculosis. 
 PMID:23283639
                                    
                                
                                    An efficient T-cell epitope discovery strategy using in silico prediction and the iTopia assay platform. 
 PMID:23243589
                                    
                                
                                    Cell therapy: a safe and efficacious therapeutic treatment for Alzheimer's disease in APP+PS1 mice. 
 PMID:23226497
                                    
                                
                                    EpicCapo: epitope prediction using combined information of amino acid pairwise contact potentials and HLA-peptide contact site information. 
 PMID:23176036
                                    
                                
                                    A rationally engineered anti-HIV peptide fusion inhibitor with greatly reduced immunogenicity. 
 PMID:23147734
                                    
                                
                                    MHC class I-presented T cell epitopes identified by immunoproteomics analysis are targets for a cross reactive influenza-specific T cell response. 
 PMID:23144892
                                    
                                
                                    Cross-allele cytotoxic T lymphocyte responses against 2009 pandemic H1N1 influenza A virus among HLA-A24 and HLA-A3 supertype-positive individuals. 
 PMID:23015716
                                    
                                
                                    Bioinformatics for cancer immunology and immunotherapy. 
 PMID:22986455
                                    
                                
                                    Phase I clinical study of a personalized peptide vaccination available for six different human leukocyte antigen (HLA-A2, -A3, -A11, -A24, -A31 and -A33)-positive patients with advanced cancer. 
 PMID:22977478
                                    
                                
                                    Residue analysis of a CTL epitope of SARS-CoV spike protein by IFN-gamma production and bioinformatics prediction. 
 PMID:22963340
                                    
                                
                                    CD8 T cell autoreactivity to preproinsulin epitopes with very low human leucocyte antigen class I binding affinity. 
 PMID:22943201
                                    
                                
                                    Nuclear export signal and immunodominant CD8+ T cell epitope in influenza A virus matrix protein 1. 
 PMID:22923812
                                    
                                
                                    Predicting HLA class I non-permissive amino acid residues substitutions. 
 PMID:22905104
                                    
                                
                                    DNA prime-adenovirus boost immunization induces a vigorous and multifunctional T-cell response against hepadnaviral proteins in the mouse and woodchuck model. 
 PMID:22718818
                                    
                                
                                    Mapping of novel peptides of WT-1 and presenting HLA alleles that induce epitope-specific HLA-restricted T cells with cytotoxic activity against WT-1(+) leukemias. 
 PMID:22623625
                                    
                                
                                    HapMap SNP Scanner: an online program to mine SNPs responsible for cell phenotype. 
 PMID:22568758
                                    
                                
                                    Trypanosoma cruzi adjuvants potentiate T cell-mediated immunity induced by a NY-ESO-1 based antitumor vaccine. 
 PMID:22567144
                                    
                                
                                    In vitro and in vivo identification of a novel cytotoxic T lymphocyte epitope from Rv3425 of Mycobacterium tuberculosis. 
 PMID:22537173
                                    
                                
                                    Cyclin-A1 represents a new immunogenic targetable antigen expressed in acute myeloid leukemia stem cells with characteristics of a cancer-testis antigen. 
 PMID:22529286
                                    
                                
                                    Computational prediction and experimental assessment of an HLA-A*0201-restricted cytotoxic T lymphocyte epitope from neutral endopeptidase. 
 PMID:22492182
                                    
                                
                                    GPS-MBA: computational analysis of MHC class II epitopes in type 1 diabetes. 
 PMID:22479466
                                    
                                
                                    Whole genomes of Chandipura virus isolates and comparative analysis with other rhabdoviruses. 
 PMID:22272333
                                    
                                
                                    Discovery of T cell antigens by high-throughput screening of synthetic minigene libraries. 
 PMID:22253836
                                    
                                
                                    Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy? 
 PMID:22149708
                                    
                                
                                    Identification of three novel CTL epitopes within nucleocapsid protein of Hantaan virus. 
 PMID:22111596
                                    
                                
                                    POPISK: T-cell reactivity prediction using support vector machines and string kernels. 
 PMID:22085524
                                    
                                
                                    Viral adaptation to host immune responses occurs in chronic hepatitis B virus (HBV) infection, and adaptation is greatest in HBV e antigen-negative disease. 
 PMID:22072755
                                    
                                
                                    Epitope-targeted cytotoxic T cells mediate lineage-specific antitumor efficacy induced by the cancer mucosa antigen GUCY2C. 
 PMID:22057677
                                    
                                
                                    Bacteria modulate the CD8+ T cell epitope repertoire of host cytosol-exposed proteins to manipulate the host immune response. 
 PMID:22022257
                                    
                                
                                    A peptide filtering relation quantifies MHC class I peptide optimization. 
 PMID:22022238
                                    
                                
                                    T-cell epitope finding on EPHA2 for further glioma vaccine development: An immunomics study. 
 PMID:21977079
                                    
                                
                                    The origin of proteasome-inhibitor resistant HLA class I peptidomes: a study with HLA-A*68:01. 
 PMID:21969608
                                    
                                
                                    Optimal viral immune surveillance evasion strategies. 
 PMID:21925527
                                    
                                
                                    In silico analysis of six known Leishmania major antigens and in vitro evaluation of specific epitopes eliciting HLA-A2 restricted CD8 T cell response. 
 PMID:21909442
                                    
                                
                                    Vaccines targeting the cancer-testis antigen SSX-2 elicit HLA-A2 epitope-specific cytolytic T cells. 
 PMID:21904219
                                    
                                
                                    Identification of H-2d restricted T cell epitope of foot-and-mouth disease virus structural protein VP1. 
 PMID:21896206
                                    
                                
                                    Identification of potential human respiratory syncytial virus and metapneumovirus T cell epitopes using computational prediction and MHC binding assays. 
 PMID:21854782
                                    
                                
                                    High-throughput identification of potential minor histocompatibility antigens by MHC tetramer-based screening: feasibility and limitations. 
 PMID:21850230
                                    
                                
                                    Emerging vaccine informatics. 
 PMID:21772787
                                    
                                
                                    Concurrent detection of circulating minor histocompatibility antigen-specific CD8+ T cells in SCT recipients by combinatorial encoding MHC multimers. 
 PMID:21731686
                                    
                                
                                    Identification of CD8+ cytotoxic T lymphocyte epitopes from porcine reproductive and respiratory syndrome virus matrix protein in BALB/c mice. 
 PMID:21619712
                                    
                                
                                    FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens. 
 PMID:21496229
                                    
                                
                                    Cytolytic T lymphocytes from HLA-B8+ donors frequently recognize the Hodgkin's lymphoma associated latent membrane protein 2 of Epstein Barr virus. 
 PMID:21429247
                                    
                                
                                    Expansion of interferon-gamma-producing multifunctional CD4+ T-cells and dysfunctional CD8+ T-cells by glypican-3 peptide library in hepatocellular carcinoma patients. 
 PMID:21419713
                                    
                                
                                    Specific recognition and inhibition of Ewing tumour growth by antigen-specific allo-restricted cytotoxic T cells. 
 PMID:21407224
                                    
                                
                                    Comparative analysis of epitope predictions: proposed library of putative vaccine candidates for HIV. 
 PMID:21383906
                                    
                                
                                    CD8+ T cells specific for the androgen receptor are common in patients with prostate cancer and are able to lyse prostate tumor cells. 
 PMID:21350948
                                    
                                
                                    Optimal epitope composition after antigen screening using a live bacterial delivery vector: application to TRP-2. 
 PMID:21327126
                                    
                                
                                    Immune-induced evolutionary selection focused on a single reading frame in overlapping hepatitis B virus proteins. 
 PMID:21307195
                                    
                                
                                    A TCR targeting the HLA-A*0201-restricted epitope of MAGE-A3 recognizes multiple epitopes of the MAGE-A antigen superfamily in several types of cancer. 
 PMID:21149604
                                    
                                
                                    Real time detection of peptide-MHC dissociation reveals that improvement of primary MHC-binding residues can have a minimal, or no, effect on stability. 
 PMID:21130497
                                    
                                
                                    State of the art and challenges in sequence based T-cell epitope prediction. 
 PMID:21067545
                                    
                                
                                    Prediction of epitopes using neural network based methods. 
 PMID:21047511
                                    
                                
                                    Real-time, high-throughput measurements of peptide-MHC-I dissociation using a scintillation proximity assay. 
 PMID:21044632
                                    
                                
                                    Identification of a cyclin B1-derived CTL epitope eliciting spontaneous responses in both cancer patients and healthy donors. 
 PMID:20981424
                                    
                                
                                    Soluble plasma HLA peptidome as a potential source for cancer biomarkers. 
 PMID:20974924
                                    
                                
                                    The impact of human leukocyte antigen (HLA) micropolymorphism on ligand specificity within the HLA-B*41 allotypic family. 
 PMID:20934997
                                    
                                
                                    MHC-I prediction using a combination of T cell epitopes and MHC-I binding peptides. 
 PMID:20920507
                                    
                                
                                    Phase I clinical trial of the vaccination for the patients with metastatic melanoma using gp100-derived epitope peptide restricted to HLA-A*2402. 
 PMID:20843377
                                    
                                
                                    The membrane protein of severe acute respiratory syndrome coronavirus acts as a dominant immunogen revealed by a clustering region of novel functionally and structurally defined cytotoxic T-lymphocyte epitopes. 
 PMID:20831383
                                    
                                
                                    Advances in cellular therapy for the treatment of thyroid cancer. 
 PMID:20671939
                                    
                                
                                    Immunodominant HIV-specific CD8+ T-cell responses are common to blood and gastrointestinal mucosa, and Gag-specific responses dominate in rectal mucosa of HIV controllers. 
 PMID:20668079
                                    
                                
                                    Contribution of CD8 T lymphocytes to the immuno-pathogenesis of multiple sclerosis and its animal models. 
 PMID:20637863
                                    
                                
                                    Mutation-specific control of BCR-ABL T315I positive leukemia with a recombinant yeast-based therapeutic vaccine in a murine model. 
 PMID:20619375
                                    
                                
                                    Major histocompatibility complex class I binding predictions as a tool in epitope discovery. 
 PMID:20518827
                                    
                                
                                    Induction of Specific CD8 T Cells against Intracellular Bacteria by CD8 T-Cell-Oriented Immunization Approaches. 
 PMID:20508818
                                    
                                
                                    MetaMHC: a meta approach to predict peptides binding to MHC molecules. 
 PMID:20483919
                                    
                                
                                    HLA-F complex without peptide binds to MHC class I protein in the open conformer form. 
 PMID:20483783
                                    
                                
                                    MHC class II epitope predictive algorithms. 
 PMID:20408898
                                    
                                
                                    HLA-A2-restricted T-cell epitopes specific for prostatic acid phosphatase. 
 PMID:20140431
                                    
                                
                                    Multiple, non-conserved, internal viral ligands naturally presented by HLA-B27 in human respiratory syncytial virus-infected cells. 
 PMID:20081153
                                    
                                
                                    Characterization of an human leucocyte antigen A2-restricted Epstein-Barr virus nuclear antigen-1-derived cytotoxic T-lymphocyte epitope. 
 PMID:19922423
                                    
                                
                                    Construction of HCV-polytope vaccine candidates harbouring immune-enhancer sequences and primary evaluation of their immunogenicity in BALB/c mice. 
 PMID:19882243
                                    
                                
                                    Discovery of naturally processed and HLA-presented class I peptides from vaccinia virus infection using mass spectrometry for vaccine development. 
 PMID:19822231
                                    
                                
                                    Efficient induction of cytotoxic T lymphocytes specific for severe acute respiratory syndrome (SARS)-associated coronavirus by immunization with surface-linked liposomal peptides derived from a non-structural polyprotein 1a. 
 PMID:19748524
                                    
                                
                                    Discovery of common marburgvirus protective epitopes in a BALB/c mouse model. 
 PMID:19712478
                                    
                                
                                    Identification of HLA-A*2402-restricted HCMV immediate early-1 (IE-1) epitopes as targets for CD8+ HCMV-specific cytotoxic T lymphocytes. 
 PMID:19698161
                                    
                                
                                    Presentation of human T cell leukemia virus type 1 (HTLV-1) Tax protein by dendritic cells: the underlying mechanism of HTLV-1-associated neuroinflammatory disease. 
 PMID:19656902
                                    
                                
                                    Development, characterization, and immunotherapeutic use of peptide mimics of the Thomsen-Friedenreich carbohydrate antigen. 
 PMID:19649208
                                    
                                
                                    Analysis of predicted CD8+ T cell epitopes from proteins encoded by the specific RD regions of Mycobacterium tuberculosis for vaccine development and specific diagnosis. 
 PMID:19609720
                                    
                                
                                    A HCMV pp65 polypeptide promotes the expansion of CD4+ and CD8+ T cells across a wide range of HLA specificities. 
 PMID:19604317
                                    
                                
                                    Functional unresponsiveness and replicative senescence of myeloid leukemia antigen-specific CD8+ T cells after allogeneic stem cell transplantation. 
 PMID:19602548
                                    
                                
                                    FRED--a framework for T-cell epitope detection. 
 PMID:19578173
                                    
                                
                                    Enhanced systemic immune reactivity to a Basal cell carcinoma associated antigen following photodynamic therapy. 
 PMID:19549769
                                    
                                
                                    Prostvac-VF: a vector-based vaccine targeting PSA in prostate cancer. 
 PMID:19548854
                                    
                                
                                    Gene expression profiling and real-time PCR analyses identify novel potential cancer-testis antigens in multiple myeloma. 
 PMID:19542363
                                    
                                
                                    Genome-wide screening of human T-cell epitopes in influenza A virus reveals a broad spectrum of CD4(+) T-cell responses to internal proteins, hemagglutinins, and neuraminidases. 
 PMID:19524006
                                    
                                
                                    HLA-A*0201-restricted CTL epitope of a novel osteosarcoma antigen, papillomavirus binding factor. 
 PMID:19523231
                                    
                                
                                    New gene expressed in prostate: a potential target for T cell-mediated prostate cancer immunotherapy. 
 PMID:19495750
                                    
                                
                                    Synthetic peptides coupled to the surface of liposomes effectively induce SARS coronavirus-specific cytotoxic T lymphocytes and viral clearance in HLA-A*0201 transgenic mice. 
 PMID:19490987
                                    
                                
                                    Viruses selectively mutate their CD8+ T-cell epitopes--a large-scale immunomic analysis. 
 PMID:19478014
                                    
                                
                                    OptiTope--a web server for the selection of an optimal set of peptides for epitope-based vaccines. 
 PMID:19420066
                                    
                                
                                    Identification of varicella-zoster virus-specific CD8 T cells in patients after T-cell-depleted allogeneic stem cell transplantation. 
 PMID:19386715
                                    
                                
                                    Interaction of Bap31 and MHC class I molecules and their traffic out of the endoplasmic reticulum. 
 PMID:19342655
                                    
                                
                                    CTL activation using the natural low-affinity epitope 222-229 from tyrosinase-related protein 1 leads to tumor rejection. 
 PMID:19276379
                                    
                                
                                    Herpes simplex virus type 2 tegument proteins contain subdominant T-cell epitopes detectable in BALB/c mice after DNA immunization and infection. 
 PMID:19264627
                                    
                                
                                    Prediction of MHC binding peptide using Gibbs motif sampler, weight matrix and artificial neural network. 
 PMID:19238237
                                    
                                
                                    Ranking of binding and nonbinding peptides to MHC class I molecules using inverse folding approach: implications for vaccine design. 
 PMID:19238199
                                    
                                
                                    A mathematical framework for the selection of an optimal set of peptides for epitope-based vaccines. 
 PMID:19112482
                                    
                                
                                    Vaccinia virus-specific CD8(+) T-cell responses target a group of epitopes without a strong immunodominance hierarchy in humans. 
 PMID:18955096
                                    
                                
                                    The specificity and polymorphism of the MHC class I prevents the global adaptation of HIV-1 to the monomorphic proteasome and TAP. 
 PMID:18949050
                                    
                                
                                    Flanking p10 contribution and sequence bias in matrix based epitope prediction: revisiting the assumption of independent binding pockets. 
 PMID:18925947
                                    
                                
                                    Parasite stage-specific recognition of endogenous Toxoplasma gondii-derived CD8+ T cell epitopes. 
 PMID:18922097
                                    
                                
                                    Side-chain conformational space analysis (SCSA): a multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities. 
 PMID:18841329
                                    
                                
                                    MalVac: database of malarial vaccine candidates. 
 PMID:18811938
                                    
                                
                                    HapMap scanning of novel human minor histocompatibility antigens. 
 PMID:18809759
                                    
                                
                                    Improving peptide-MHC class I binding prediction for unbalanced datasets. 
 PMID:18803836
                                    
                                
                                    iSPOT: a web tool for the analysis and recognition of protein domain specificity. 
 PMID:18629248
                                    
                                
                                    EpiToolKit--a web server for computational immunomics. 
 PMID:18440979
                                    
                                
                                    Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research. 
 PMID:18366636
                                    
                                
                                    Identification of HLA-A2 restricted T-cell epitopes within the conserved region of the immunoglobulin G heavy-chain in patients with multiple myeloma. 
 PMID:18363871
                                    
                                
                                    Identification of novel IGRP epitopes targeted in type 1 diabetes patients. 
 PMID:18358785
                                    
                                
                                    Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes. 
 PMID:18315850
                                    
                                
                                    Defining the directionality and quality of influenza virus-specific CD8+ T cell cross-reactivity in individuals infected with hepatitis C virus. 
 PMID:18246203
                                    
                                
                                    Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries. 
 PMID:18221540
                                    
                                
                                    Identification of an HLA-A*0201-restricted T-cell epitope on the MPT51 protein, a major secreted protein derived from Mycobacterium tuberculosis, by MPT51 overlapping peptide screening. 
 PMID:18212086
                                    
                                
                                    Human major histocompatibility complex (MHC) class I molecules with disulfide traps secure disease-related antigenic peptides and exclude competitor peptides. 
 PMID:18195006
                                    
                                
                                    Magnitude, breadth, and functional profile of T-cell responses during human immunodeficiency virus primary infection with B and BF viral variants. 
 PMID:18184702
                                    
                                
                                    '1-8 interferon inducible gene family': putative colon carcinoma-associated antigens. 
 PMID:18071348
                                    
                                
                                    Modeling the adaptive immune system: predictions and simulations. 
 PMID:18045832
                                    
                                
                                    Robust quantitative modeling of peptide binding affinities for MHC molecules using physical-chemical descriptors. 
 PMID:18045233
                                    
                                
                                    Identification of Lck-derived peptides applicable to anti-cancer vaccine for patients with human leukocyte antigen-A3 supertype alleles. 
 PMID:18043580
                                    
                                
                                    How does HTLV-I persist despite a strong cell-mediated immune response? 
 PMID:18042431
                                    
                                
                                    T cell responses to human endogenous retroviruses in HIV-1 infection. 
 PMID:17997601
                                    
                                
                                    Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. 
 PMID:17973982
                                    
                                
                                    Bortezomib down-regulates the cell-surface expression of HLA class I and enhances natural killer cell-mediated lysis of myeloma. 
 PMID:17947507
                                    
                                
                                    Sequence-based human leukocyte antigen-B typing of patients infected with Ebola virus in Uganda in 2000: identification of alleles associated with fatal and nonfatal disease outcomes. 
 PMID:17940968
                                    
                                
                                    NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence. 
 PMID:17726526
                                    
                                
                                    Phenotype frequencies of autosomal minor histocompatibility antigens display significant differences among populations. 
 PMID:17604453
                                    
                                
                                    Epitope mapping of HSV-1 glycoprotein K (gK) reveals a T cell epitope located within the signal domain of gK. 
 PMID:17499382
                                    
                                
                                    Long-term T cell memory to human leucocyte antigen-A2 supertype epitopes in humans vaccinated against smallpox. 
 PMID:17488297
                                    
                                
                                    A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes. 
 PMID:17426378
                                    
                                
                                    Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools. 
 PMID:17381846
                                    
                                
                                    Control of mesothelin-expressing ovarian cancer using adoptive transfer of mesothelin peptide-specific CD8+ T cells. 
 PMID:17377599
                                    
                                
                                    Activation-induced expression of CD137 permits detection, isolation, and expansion of the full repertoire of CD8+ T cells responding to antigen without requiring knowledge of epitope specificities. 
 PMID:17371945
                                    
                                
                                    Hepatitis B virus splice-generated protein induces T-cell responses in HLA-transgenic mice and hepatitis B virus-infected patients. 
 PMID:17360751
                                    
                                
                                    Telomerase immunity from bench to bedside: round one. 
 PMID:17324292
                                    
                                
                                    Prediction of supertype-specific HLA class I binding peptides using support vector machines. 
 PMID:17303158
                                    
                                
                                    Peptide vaccine given with a Toll-like receptor agonist is effective for the treatment and prevention of spontaneous breast tumors. 
 PMID:17283170
                                    
                                
                                    Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6-associated pemphigus vulgaris. 
 PMID:17254312
                                    
                                
                                    Prediction of cellular immune responses against CFTR in patients with cystic fibrosis after gene therapy. 
 PMID:17218617
                                    
                                
                                    Tissue-specific regulation of CD8+ T-lymphocyte immunodominance in respiratory syncytial virus infection. 
 PMID:17182672
                                    
                                
                                    Processing sites are different in the generation of HLA-A2.1-restricted, T cell reactive tumor antigen epitopes and viral epitopes. 
 PMID:17166407
                                    
                                
                                    A modular concept of HLA for comprehensive peptide binding prediction. 
 PMID:17119951
                                    
                                
                                    SVRMHC prediction server for MHC-binding peptides. 
 PMID:17059589
                                    
                                
                                    The polycomb group proteins, BMI-1 and EZH2, are tumour-associated antigens. 
 PMID:17024127
                                    
                                
                                    Sequence variations of Epstein-Barr virus LMP1 gene in nasal NK/T-cell lymphoma. 
 PMID:16917737
                                    
                                
                                    Anti-idiotype antibody induced cellular immunity in mice transgenic for human carcinoembryonic antigen. 
 PMID:16895556
                                    
                                
                                    Immunoinformatics comes of age. 
 PMID:16846250
                                    
                                
                                    SVMHC: a server for prediction of MHC-binding peptides. 
 PMID:16844990
                                    
                                
                                    MHC-BPS: MHC-binder prediction server for identifying peptides of flexible lengths from sequence-derived physicochemical properties. 
 PMID:16832638
                                    
                                
                                    A community resource benchmarking predictions of peptide binding to MHC-I molecules. 
 PMID:16789818
                                    
                                
                                    Identification of an immunogenic CD8+ T-cell epitope derived from gamma-globin, a putative tumor-associated antigen for juvenile myelomonocytic leukemia. 
 PMID:16778141
                                    
                                
                                    Poxvirus CD8+ T-cell determinants and cross-reactivity in BALB/c mice. 
 PMID:16775319
                                    
                                
                                    Secondary anchor substitutions in an HLA-A*0201-restricted T-cell epitope derived from Her-2/neu. 
 PMID:16597462
                                    
                                
                                    Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models. 
 PMID:16579851
                                    
                                
                                    Identification of a new HLA-A2-restricted T-cell epitope within HM1.24 as immunotherapy target for multiple myeloma. 
 PMID:16569595
                                    
                                
                                    Interplay of cellular and humoral immune responses against BK virus in kidney transplant recipients with polyomavirus nephropathy. 
 PMID:16537617
                                    
                                
                                    Chemo-immunotherapy of colorectal carcinoma: preclinical rationale and clinical experience. 
 PMID:16502353
                                    
                                
                                    Immunological characterizations of the nucleocapsid protein based SARS vaccine candidates. 
 PMID:16494977
                                    
                                
                                    Prediction of MHC class II binding peptides based on an iterative learning model. 
 PMID:16351712
                                    
                                
                                    A frameshift polymorphism in P2X5 elicits an allogeneic cytotoxic T lymphocyte response associated with remission of chronic myeloid leukemia. 
 PMID:16322791
                                    
                                
                                    Diversity in the acute CD8 T cell response to vaccinia virus in humans. 
 PMID:16301664
                                    
                                
                                    Lassa fever virus peptides predicted by computational analysis induce epitope-specific cytotoxic-T-lymphocyte responses in HLA-A2.1 transgenic mice. 
 PMID:16210487
                                    
                                
                                    Identification of novel human CTL epitopes and their agonist epitopes of mesothelin. 
 PMID:16144939
                                    
                                
                                    The sentinel within: exploiting the immune system for cancer biomarkers. 
 PMID:16083262
                                    
                                
                                    The gene associated with trichorhinophalangeal syndrome in humans is overexpressed in breast cancer. 
 PMID:16043716
                                    
                                
                                    Identification of two new HLA-A*1101-restricted tax epitopes recognized by cytotoxic T lymphocytes in an adult T-cell leukemia patient after hematopoietic stem cell transplantation. 
 PMID:16014972
                                    
                                
                                    Integrated modeling of the major events in the MHC class I antigen processing pathway. 
 PMID:15987883
                                    
                                
                                    PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse. 
 PMID:15980450
                                    
                                
                                    MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. 
 PMID:15980449
                                    
                                
                                    Recognition of six-transmembrane epithelial antigen of the prostate-expressing tumor cells by peptide antigen-induced cytotoxic T lymphocytes. 
 PMID:15958640
                                    
                                
                                    Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method. 
 PMID:15927070
                                    
                                
                                    Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications. 
 PMID:15868141
                                    
                                
                                    H-2 Kd-restricted hepatitis B virus-derived epitope whose specific CD8+ T lymphocytes can produce gamma interferon without cytotoxicity. 
 PMID:15827171
                                    
                                
                                    Mycobacterium tuberculosis genome-wide screen exposes multiple CD8 T cell epitopes. 
 PMID:15762882
                                    
                                
                                    Amino acid variation within the fusion protein of respiratory syncytial virus subtype A and B strains during annual epidemics in South Africa. 
 PMID:15744582
                                    
                                
                                    CD8+ immunodominance among Epstein-Barr virus lytic cycle antigens directly reflects the efficiency of antigen presentation in lytically infected cells. 
 PMID:15684323
                                    
                                
                                    NY-ESO-1 is highly expressed in poor-prognosis multiple myeloma and induces spontaneous humoral and cellular immune responses. 
 PMID:15671442
                                    
                                
                                    Prediction of HLA-A2-restricted CTL epitope specific to HCC by SYFPEITHI combined with polynomial method. 
 PMID:15633217
                                    
                                
                                    Identification of a naturally processed cytotoxic CD8 T-cell epitope of coxsackievirus B4, presented by HLA-A2.1 and located in the PEVKEK region of the P2C nonstructural protein. 
 PMID:15564450
                                    
                                
                                    Molecular genetic characterization and subcellular localization of a putative Theileria annulata membrane protein. 
 PMID:15490238
                                    
                                
                                    Peripheral blood T cell responses to keratin peptides that share sequences with streptococcal M proteins are largely restricted to skin-homing CD8(+) T cells. 
 PMID:15373909
                                    
                                
                                    Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles. 
 PMID:15349703
                                    
                                
                                    Comparative immunopeptidomics of humans and their pathogens. 
 PMID:15326311
                                    
                                
                                    Discriminating self from nonself with short peptides from large proteomes. 
 PMID:15322777
                                    
                                
                                    Modeling the structure of bound peptide ligands to major histocompatibility complex. 
 PMID:15322290
                                    
                                
                                    Mesothelin-specific CD8(+) T cell responses provide evidence of in vivo cross-priming by antigen-presenting cells in vaccinated pancreatic cancer patients. 
 PMID:15289501
                                    
                                
                                    Development of a DNA vaccine targeting human papillomavirus type 16 oncoprotein E6. 
 PMID:15280455
                                    
                                
                                    Expression of cancer-testis antigens in hepatocellular carcinoma. 
 PMID:15237429
                                    
                                
                                    MAGE-A8 overexpression in transitional cell carcinoma of the bladder: identification of two tumour-associated antigen peptides. 
 PMID:15213716
                                    
                                
                                    Identification of murine H2-Dd- and H2-Ab-restricted T-cell epitopes on a novel protective antigen, MPT51, of Mycobacterium tuberculosis. 
 PMID:15213124
                                    
                                
                                    Identification of parathyroid hormone-related protein-derived peptides immunogenic in human histocompatibility leukocyte antigen-A24+ prostate cancer patients. 
 PMID:15199397
                                    
                                
                                    Protection against lethal vaccinia virus challenge in HLA-A2 transgenic mice by immunization with a single CD8+ T-cell peptide epitope of vaccinia and variola viruses. 
 PMID:15194781
                                    
                                
                                    Autologous lymphoma vaccines induce human T cell responses against multiple, unique epitopes. 
 PMID:15146248
                                    
                                
                                    Two Salmonella OmpC K(b)-restricted epitopes for CD8+-T-cell recognition. 
 PMID:15102821
                                    
                                
                                    Identification of an HLA-A*0201-restricted CD8+ T-cell epitope SSp-1 of SARS-CoV spike protein. 
 PMID:15016646
                                    
                                
                                    Analysis and prediction of affinity of TAP binding peptides using cascade SVM. 
 PMID:14978300
                                    
                                
                                    High vaccination efficiency of low-affinity epitopes in antitumor immunotherapy. 
 PMID:14755339
                                    
                                
                                    Potential selection of LMP1 variants in nasopharyngeal carcinoma. 
 PMID:14694118
                                    
                                
                                    Proteomics in Vaccinology and Immunobiology: An Informatics Perspective of the Immunone. 
 PMID:14688414
                                    
                                
                                    DNA vaccination protects mice against challenge with Listeria monocytogenes expressing the hepatitis C virus NS3 protein. 
 PMID:14573658
                                    
                                
                                    MHCPred: A server for quantitative prediction of peptide-MHC binding. 
 PMID:12824380
                                    
                                
                                    Identification of the beta cell antigen targeted by a prevalent population of pathogenic CD8+ T cells in autoimmune diabetes. 
 PMID:12815107
                                    
                                
                                    Respiratory syncytial virus nucleoprotein-specific cytotoxic T-cell epitopes in a South African population of diverse HLA types are conserved in circulating field strains. 
 PMID:12805430
                                    
                                
                                    Identification of a polymorphic gene, BCL2A1, encoding two novel hematopoietic lineage-specific minor histocompatibility antigens. 
 PMID:12771180
                                    
                                
                                    Large-scale analysis of HLA peptides presented by HLA-Cw4. 
 PMID:12750860
                                    
                                
                                    Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. 
 PMID:12717023
                                    
                                
                                    Ex vivo profiling of CD8+-T-cell responses to human cytomegalovirus reveals broad and multispecific reactivities in healthy virus carriers. 
 PMID:12692225
                                    
                                
                                    Quantitation of CD8+ T cell responses to newly identified HLA-A*0201-restricted T cell epitopes conserved among vaccinia and variola (smallpox) viruses. 
 PMID:12668642
                                    
                                
                                    Kaposi's sarcoma-associated herpesvirus cytotoxic T lymphocytes recognize and target Darwinian positively selected autologous K1 epitopes. 
 PMID:12634388
                                    
                                
                                    Melanoma inhibitor of apoptosis protein (ML-IAP) is a target for immune-mediated tumor destruction. 
 PMID:12626761
                                    
                                
                                    A comparative molecular similarity index analysis (CoMSIA) study identifies an HLA-A2 binding supermotif. 
 PMID:12602948
                                    
                                
                                    Multiepitope CD8(+) T cell response to a NY-ESO-1 peptide vaccine results in imprecise tumor targeting. 
 PMID:12488431
                                    
                                
                                    Getting peptide vaccines to work: just a matter of quality control? 
 PMID:12488425
                                    
                                
                                    Recovery of known T-cell epitopes by computational scanning of a viral genome. 
 PMID:12400854
                                    
                                
                                    Vaccination with minigenes encoding V(H)-derived major histocompatibility complex class I-binding epitopes activates cytotoxic T cells that ablate autoantibody-producing B cells and inhibit lupus. 
 PMID:12235207
                                    
                                
                                    Detection of peptide-specific CTL-precursors in peripheral blood lymphocytes of cancer patients. 
 PMID:12232766
                                    
                                
                                    Prediction of MHC class I binding peptides, using SVMHC. 
 PMID:12225620
                                    
                                
                                    Expression of cutaneous lymphocyte-associated antigen by CD8(+) T cells specific for a skin-tropic virus. 
 PMID:12189248
                                    
                                
                                    CD8(+) T cell responses against a dominant cryptic HLA-A2 epitope after NY-ESO-1 peptide immunization of cancer patients. 
 PMID:12186971
                                    
                                
                                    Rational design of peptide-based tumor vaccines. 
 PMID:12180543
                                    
                                
                                    Identification of cytotoxic T lymphocyte epitopes of human herpesvirus 8. 
 PMID:12100728
                                    
                                
                                    Role of signal sequence in vaccine-induced protection against experimental coccidioidomycosis. 
 PMID:12065493
                                    
                                
                                    Identification of Kaposi's sarcoma-associated herpesvirus (KSHV)-specific cytotoxic T-lymphocyte epitopes and evaluation of reconstitution of KSHV-specific responses in human immunodeficiency virus type 1-Infected patients receiving highly active antiretroviral therapy. 
 PMID:11861829
                                    
                                
                                    Sequence variation in a newly identified HLA-B35-restricted epitope in the influenza A virus nucleoprotein associated with escape from cytotoxic T lymphocytes. 
 PMID:11836437
                                    
                                
                                    HLA-B*35-restricted CD8(+)-T-cell epitope in Mycobacterium tuberculosis Rv2903c. 
 PMID:11796635
                                    
                                
                                    Identification of HLA-A2-restricted CD8(+) cytotoxic T cell responses in primary biliary cirrhosis: T cell activation is augmented by immune complexes cross-presented by dendritic cells. 
 PMID:11781370
                                    
                                
                                    Rapid determination of HLA B*07 ligands from the West Nile virus NY99 genome. 
 PMID:11585536
                                    
                                
                                    Elucidating the autoimmune and antitumor effector mechanisms of a treatment based on cytotoxic T lymphocyte antigen-4 blockade in combination with a B16 melanoma vaccine: comparison of prophylaxis and therapy. 
 PMID:11514604
                                    
                                
                                    Identification of the immunodominant H-2K(k)-restricted cytotoxic T-cell epitope in the Borna disease virus nucleoprotein. 
 PMID:11507203
                                    
                                
                                    Predicting sequences and structures of MHC-binding peptides: a computational combinatorial approach. 
 PMID:11495228
                                    
                                
                                    Identification of cyclophilin B-derived peptides capable of inducing histocompatibility leukocyte antigen-A2-restricted and tumor-specific cytotoxic T lymphocytes. 
 PMID:11473727
                                    
                                
                                    A geometric and algebraic view of MHC-peptide complexes and their binding properties. 
 PMID:11472639
                                    
                                
                                    Protection from Ebola virus mediated by cytotoxic T lymphocytes specific for the viral nucleoprotein. 
 PMID:11222689
                                    
                                
                                    Efficient identification of novel HLA-A(*)0201-presented cytotoxic T lymphocyte epitopes in the widely expressed tumor antigen PRAME by proteasome-mediated digestion analysis. 
 PMID:11136822
                                    
                                
                                    Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles. 
 PMID:11045629
                                    
                                
                                    Immunogenicity of mutations induced by nucleoside reverse transcriptase inhibitors for human immunodeficiency virus type 1-specific cytotoxic T cells. 
 PMID:10982378
                                    
                                
                                    Cytotoxic T cell immunity against telomerase reverse transcriptase in humans. 
 PMID:10759561
                                    
                                
                                    Cytotoxic T-cell-mediated response against Yersinia pseudotuberculosis in HLA-B27 transgenic rat. 
 PMID:10417137
                                    
                                
                                    Natural variation of the expression of HLA and endogenous antigen modulates CTL recognition in an in vitro melanoma model. 
 PMID:10048982
                                    
                                
                                    Induction of tumor antigen-specific immunity in vivo by a novel vaccinia vector encoding safety-modified simian virus 40 T antigen. 
 PMID:9923859
                                    
                                
                                    Enhanced in vitro potency and in vivo immunogenicity of a CTL epitope from hepatitis C virus core protein following amino acid replacement at secondary HLA-A2.1 binding positions. 
 PMID:9739058
                                    
                                
                                    gp100/pmel 17 is a murine tumor rejection antigen: induction of "self"-reactive, tumoricidal T cells using high-affinity, altered peptide ligand. 
 PMID:9670040
                                    
                                
                                    Identification of a cytotoxic T-lymphocyte response to the novel BARF0 protein of Epstein-Barr virus: a critical role for antigen expression. 
 PMID:9658107
                                    
                                
                                    Antigen processing by proteasomes: insights into the molecular basis of crypticity. 
 PMID:9228283
                                    
                                
                                    Binding of nonamer peptides to three HLA-B51 molecules which differ by a single amino acid substitution in the A-pocket. 
 PMID:9110930
                                    
                                
                                    The life span of major histocompatibility complex-peptide complexes influences the efficiency of presentation and immunogenicity of two class I-restricted cytotoxic T lymphocyte epitopes in the Epstein-Barr virus nuclear antigen 4. 
 PMID:8642295
                                    
                                
                                    Specificity of the H-2 L(d)-restricted cytotoxic T-lymphocyte response to the mouse hepatitis virus nucleocapsid protein. 
 PMID:8627807
                                    
                                
                                    MHC ligands and peptide motifs: first listing. 
 PMID:7890324
                                    
                                
                                    Rational design of nonnatural peptides as high-affinity ligands for the HLA-B*2705 human leukocyte antigen. 
 PMID:7846047
                                    
                                
                                    H-2M3a violates the paradigm for major histocompatibility complex class I peptide binding. 
 PMID:7722457
                                    
                                
                                    Identification of HIV protein-derived cytotoxic T lymphocyte (CTL) epitopes for their possible use as synthetic vaccine. 
 PMID:7621579
                                    
                                
                                    Peptide binding to MHC class I molecules: implications for antigenic peptide prediction. 
 PMID:7561340
                                    
                                
                                    Amino-terminal alteration of the HLA-A*0201-restricted human immunodeficiency virus pol peptide increases complex stability and in vitro immunogenicity. 
 PMID:7545295
                                    
                                
                                    Decrypting the structure of major histocompatibility complex class I-restricted cytotoxic T lymphocyte epitopes with complex peptide libraries. 
 PMID:7539039
                                    
                                
                                    Functional analysis of amino acid residues encompassing and surrounding two neighboring H-2Db-restricted cytotoxic T-lymphocyte epitopes in simian virus 40 tumor antigen. 
 PMID:7535867
                                    
                                
                                    Autoreactive CD8+ T-cell responses to human myelin protein-derived peptides. 
 PMID:7526383
                                    
                                
                                    Determinant selection of major histocompatibility complex class I-restricted antigenic peptides is explained by class I-peptide affinity and is strongly influenced by nondominant anchor residues. 
 PMID:7523572
                                    
                                
                                    The essence of epitopes. 
 PMID:7523566