Human Physiome Field Markup Language
Names
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Human Physiome Field Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
FieldML
metasource: Fairsharing.org
version: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Human Physiome Field Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
FieldML
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Human Physiome Field Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
FieldML
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
FieldML is a declarative language for building hierarchical models represented by generalized mathematical fields. FieldML is developed as a data model and accompanying API. FieldML can be used to represent the dynamic 3D geometry and solution fields from computational models of cells, tissues and organs. It enables model interchange for the bioengineering and general engineering analysis communities. Example uses are models of tissue structure, the distribution of proteins and other biochemical compounds, anatomical annotation, and other biological annotation.
Description
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FieldML is a declarative language for building hierarchical models represented by generalized mathematical fields. FieldML is developed as a data model and accompanying API. FieldML can be used to represent the dynamic 3D geometry and solution fields from computational models of cells, tissues and organs. It enables model interchange for the bioengineering and general engineering analysis communities. Example uses are models of tissue structure, the distribution of proteins and other biochemical compounds, anatomical annotation, and other biological annotation.
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://physiomeproject.org/software/fieldmlWebpage
More detailed information about this field from each metasource.
http://physiomeproject.org/software/fieldml
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence:
Name: Physiome Project Open Source PolicyLicence name
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Physiome Project Open Source Policy
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
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http://physiomeproject.org/about/open-source-policy
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
FieldML: concepts and implementation
PMID: 19380316
metasource: Fairsharing.org
version: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
FieldML, a proposed open standard for the Physiome project for mathematical model representation
PMID: 23900627
metasource: Fairsharing.org
version: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
FieldML: concepts and implementation
PMID: 19380316
metasource: Fairsharing.org
version: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
FieldML, a proposed open standard for the Physiome project for mathematical model representation
PMID: 23900627
metasource: Fairsharing.org
version: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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FieldML: concepts and implementation
PubMed citations: 35.
35 articles citing: FieldML: concepts and implementation
Navigating Multi-Scale Cancer Systems Biology Towards Model-Driven Clinical Oncology and Its Applications in Personalized Therapeutics. PMID:34900668
Enabling Detailed, Biophysics-Based Skeletal Muscle Models on HPC Systems. PMID:30050446
Next-generation, personalised, model-based critical care medicine: a state-of-the art review of in silico virtual patient models, methods, and cohorts, and how to validation them. PMID:29463246
Progress in Mathematical Modeling of Gastrointestinal Slow Wave Abnormalities. PMID:29379448
Meeting the multiscale challenge: representing physiology processes over ApiNATOMY circuits using bond graphs. PMID:29285348
Using physiologically based models for clinical translation: predictive modelling, data interpretation or something in-between? PMID:27121495
The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable. PMID:27051515
Reproducibility in Computational Neuroscience Models and Simulations. PMID:27046845
Program Code Generator for Cardiac Electrophysiology Simulation with Automatic PDE Boundary Condition Handling. PMID:26356082
The role of markup for enabling interoperability in health informatics. PMID:26042043
Deranged sodium to sudden death. PMID:25772289
Using CellML with OpenCMISS to Simulate Multi-Scale Physiology. PMID:25601911
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. PMID:25494900
Human cardiac systems electrophysiology and arrhythmogenesis: iteration of experiment and computation. PMID:25362174
Modeling biology spanning different scales: an open challenge. PMID:25143952
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. PMID:24755304
A vision and strategy for the virtual physiological human: 2012 update. PMID:24427536
Modeling the chemoelectromechanical behavior of skeletal muscle using the parallel open-source software library OpenCMISS. PMID:24348739
FieldML, a proposed open standard for the Physiome project for mathematical model representation. PMID:23900627
Dealing with diversity in computational cancer modeling. PMID:23700360
Chaste: an open source C++ library for computational physiology and biology. PMID:23516352
Hierarchical approaches for systems modeling in cardiac development. PMID:23463736
Share and enjoy: anatomical models database--generating and sharing cardiovascular model data using web services. PMID:23436208
Generating anatomical models of the heart and the aorta from medical images for personalized physiological simulations. PMID:23359255
Accelerating cancer systems biology research through Semantic Web technology. PMID:23188758
Computational approaches to understand cardiac electrophysiology and arrhythmias. PMID:22886409
A tool for multi-scale modelling of the renal nephron. PMID:22670210
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development. PMID:22565629
Modelling of pH dynamics in brain cells after stroke. PMID:22419985
Considerations for reporting finite element analysis studies in biomechanics. PMID:22236526
Verification of cardiac tissue electrophysiology simulators using an N-version benchmark. PMID:21969679
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions. PMID:21878109
The Cardiac Atlas Project--an imaging database for computational modeling and statistical atlases of the heart. PMID:21737439
Module-based multiscale simulation of angiogenesis in skeletal muscle. PMID:21463529
CellML metadata standards, associated tools and repositories. PMID:19380315 -
FieldML, a proposed open standard for the Physiome project for mathematical model representation
PubMed citations: 15.
15 articles citing: FieldML, a proposed open standard for the Physiome project for mathematical model representation
BD5: An open HDF5-based data format to represent quantitative biological dynamics data. PMID:32785254
Deciphering the "Art" in Modeling and Simulation of the Knee Joint: Overall Strategy. PMID:31166589
Next-generation, personalised, model-based critical care medicine: a state-of-the art review of in silico virtual patient models, methods, and cohorts, and how to validation them. PMID:29463246
The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable. PMID:27051515
Multiscale musculoskeletal modelling, data-model fusion and electromyography-informed modelling. PMID:27051510
Reproducibility in Computational Neuroscience Models and Simulations. PMID:27046845
Databases for multilevel biophysiology research available at Physiome.jp. PMID:26441671
The role of markup for enabling interoperability in health informatics. PMID:26042043
Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative. PMID:25759811
Using CellML with OpenCMISS to Simulate Multi-Scale Physiology. PMID:25601911
Improving collaboration by standardization efforts in systems biology. PMID:25538939
Big heart data: advancing health informatics through data sharing in cardiovascular imaging. PMID:25415993
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data. PMID:25414366
Regenerative orthopaedics: in vitro, in vivo...in silico. PMID:24984594
An automatic service for the personalization of ventricular cardiac meshes. PMID:24335562
Tags:
Tags
More detailed information about this field from each metasource.
modeling and simulation
metasource: Fairsharing.org
version: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
tissue
metasource: Fairsharing.org
version: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
modeling and simulation
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
tissue
metasource: Fairsharing.orgversion: FAIRsharing.org: FieldML; Human Physiome Field Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.hbh5mk; Last edited: June 23, 2021, 1:09 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
modeling and simulation tissue
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