Yeast KID

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Yeast KID

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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yeast_kid

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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Other names: yeast_kid

Contains high- and low-throughput data relevant to phosphorylation events. It includes 6,225 low-throughput and 21,990 high-throughput interactions, from greater than 35,000 experiments.

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Publications:

Publications

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A quantitative literature-curated gold standard for kinase-substrate pairs
PMID: 21492431

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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• A quantitative literature-curated gold standard for kinase-substrate pairs PubMed citations: 30.

  30 articles citing: A quantitative literature-curated gold standard for kinase-substrate pairs

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  Constraint-based models for dominating protein interaction networks. PMID:34048146

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  Categorization of Phosphorylation Site Behavior during the Diauxic Shift in Saccharomyces cerevisiae. PMID:33630598

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  Identifying molecular features that are associated with biological function of intrinsically disordered protein regions. PMID:33616531

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  Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential. PMID:33334889

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  Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses. PMID:32597660

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  Investigation of Proteomic and Phosphoproteomic Responses to Signaling Network Perturbations Reveals Functional Pathway Organizations in Yeast. PMID:31722220

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  Regulation of Skn7-dependent, oxidative stress-induced genes by the RNA polymerase II-CTD phosphatase, Fcp1, and Mediator kinase subunit, Cdk8, in yeast. PMID:31506296

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  Metabolic profiling of cancer cells reveals genome-wide crosstalk between transcriptional regulators and metabolism. PMID:31015463

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  Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast. PMID:30856163

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  Conventional and emerging roles of the energy sensor Snf1/AMPK in Saccharomyces cerevisiae. PMID:30483520

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  Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data. PMID:30257219

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  Alternative Substrate Metabolism in Yarrowia lipolytica. PMID:29887845

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  Distributed and dynamic intracellular organization of extracellular information. PMID:29784812

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  Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. PMID:29738528

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  Delineating functional principles of the bow tie structure of a kinase-phosphatase network in the budding yeast. PMID:28298210

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  Machine Learning of Global Phosphoproteomic Profiles Enables Discrimination of Direct versus Indirect Kinase Substrates. PMID:28265048

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  Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library. PMID:28122947

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  A prior-based integrative framework for functional transcriptional regulatory network inference. PMID:27794550

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  The Hsp70 homolog Ssb and the 14-3-3 protein Bmh1 jointly regulate transcription of glucose repressed genes in Saccharomyces cerevisiae. PMID:27001512

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  Pathway connectivity and signaling coordination in the yeast stress-activated signaling network. PMID:25411400

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  Combining genetic perturbations and proteomics to examine kinase-phosphatase networks in Drosophila embryos. PMID:25284370

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  The calcineurin signaling network evolves via conserved kinase-phosphatase modules that transcend substrate identity. PMID:24930733

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  Dissection of Cdk1-cyclin complexes in vivo. PMID:24019491

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  Top-down network analysis to drive bottom-up modeling of physiological processes. PMID:23641868

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  Allele-specific behavior of molecular networks: understanding small-molecule drug response in yeast. PMID:23308257

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  Pyrosequencing-based transcriptome analysis of the asian rice gall midge reveals differential response during compatible and incompatible interaction. PMID:23202939

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  Exploring the yeast acetylome using functional genomics. PMID:22579291

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  Swimming upstream: identifying proteomic signals that drive transcriptional changes using the interactome and multiple "-omics" datasets. PMID:22482945

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  Evolutionary and Biochemical Aspects of Chemical Stress Resistance in Saccharomyces cerevisiae. PMID:22479268

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  Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs. PMID:22282571

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Tags

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model organisms

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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protein interaction experiment

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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protein interactions

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:37.066157

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model organisms molecular interactions, pathways and networks protein interaction experiment protein interaction