proteomics BAM
Names
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proteomics BAM
metasource: Fairsharing.org
version: None
proBAM
metasource: Fairsharing.org
version: None
Names
More detailed information about this field from each metasource.
proteomics BAM
metasource: Fairsharing.orgversion: None
proBAM
metasource: Fairsharing.orgversion: None
Names
More detailed information about this field from each metasource.
proteomics BAM
metasource: Fairsharing.orgversion: None
proBAM
metasource: Fairsharing.orgversion: None
The proteomics BAM (proBAM) file format is designed for storing and analyzing peptide spectrum matches (PSMs) within the context of the genome. proBAM is built upon the SAM format and its compressed binary version, BAM, with necessary modifications to accommodate information specific to proteomics data such as PSM scores and confidence, charge states and peptide level modifications, both artefactual and PTMs (post-translational modifications).
Description
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The proteomics BAM (proBAM) file format is designed for storing and analyzing peptide spectrum matches (PSMs) within the context of the genome. proBAM is built upon the SAM format and its compressed binary version, BAM, with necessary modifications to accommodate information specific to proteomics data such as PSM scores and confidence, charge states and peptide level modifications, both artefactual and PTMs (post-translational modifications).
metasource: Fairsharing.orgversion: None
Webpage:
http://www.psidev.info/proBAMWebpage
More detailed information about this field from each metasource.
Publications:
Publications
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The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data
PMID: 29386051
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data
PMID: 29386051
metasource: Fairsharing.org
version: None
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The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data
PubMed citations: 8.
8 articles citing: The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data
Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration. PMID:32236523
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. PMID:31686107
Long non-coding RNA profiling in LPS-induced intestinal inflammation model: New insight into pathogenesis. PMID:31474162
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms. PMID:31040227
Improvements to the Rice Genome Annotation Through Large-Scale Analysis of RNA-Seq and Proteomics Data Sets. PMID:30293062
PDV: an integrative proteomics data viewer. PMID:30169737
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
Tags:
Tags
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genome
metasource: Fairsharing.org
version: None
peptide
metasource: Fairsharing.org
version: None
post-translational protein modification
metasource: Fairsharing.org
version: None
spectrum
metasource: Fairsharing.org
version: None
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.orgversion: None
peptide
metasource: Fairsharing.orgversion: None
post-translational protein modification
metasource: Fairsharing.orgversion: None
spectrum
metasource: Fairsharing.orgversion: None
genome peptide post-translational protein modification spectrum
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