Unimod
Names
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Unimod
metasource: Fairsharing.org
version: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
UniMod
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.405831
unimod
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.405831
Names
More detailed information about this field from each metasource.
Unimod
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
UniMod
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
unimod
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
Names
More detailed information about this field from each metasource.
Unimod
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
UniMod
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
unimod
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
Unimod is a community-supported, comprehensive database of protein modifications for mass spectrometry applications. The aim is to provide accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).
Description
More detailed information about this field from each metasource.
Unimod is a community-supported, comprehensive database of protein modifications for mass spectrometry applications. The aim is to provide accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Database of simple protein modifications.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
Webpage:
http://www.unimod.orgWebpage
More detailed information about this field from each metasource.
http://www.unimod.org
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.405831
Licence:
Name: Design Science License (DSL)Licence name
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Design Science License (DSL)
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Licence URL
More detailed information about this field from each metasource.
https://www.gnu.org/licenses/dsl.html
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Unimod: Protein modifications for mass spectrometry
PMID: 15174123
metasource: Fairsharing.org
version: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1002/pmic.200300744
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.405831
Publications
More detailed information about this field from each metasource.
Unimod: Protein modifications for mass spectrometry
PMID: 15174123
metasource: Fairsharing.org
version: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1002/pmic.200300744
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
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Unimod: Protein modifications for mass spectrometry
PubMed citations: 110.
110 articles citing: Unimod: Protein modifications for mass spectrometry
Peptide mass fingerprinting of preserved collagen in archaeological fish bones for the identification of flatfish in European waters. PMID:35911190
FLASHIda enables intelligent data acquisition for top-down proteomics to boost proteoform identification counts. PMID:35906205
A modification-centric assessment tool for the performance of chemoproteomic probes. PMID:35864333
A learned embedding for efficient joint analysis of millions of mass spectra. PMID:35637305
Multiaspect Examinations of Possible Alternative Mappings of Identified Variant Peptides: A Case Study on the HEK293 Cell Line. PMID:35601313
Molecular probes for cellular imaging of post-translational proteoforms. PMID:35360891
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. PMID:35290070
Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry. PMID:35184559
Robust unsupervised deconvolution of linear motifs characterizes 68 protein modifications at proteome scale. PMID:34795380
Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbance. PMID:34749649
DeepLC can predict retention times for peptides that carry as-yet unseen modifications. PMID:34711972
Bioinformatics in Immunoglobulin Glycosylation Analysis. PMID:34687011
The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource. PMID:34411258
Glycan Compositions with GlyConnect Compozitor to Enhance Glycopeptide Identification. PMID:34236658
The emerging landscape of single-molecule protein sequencing technologies. PMID:34099939
Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss. PMID:33900085
Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics. PMID:33749263
LUBAC-mediated linear ubiquitination: a crucial regulator of immune signaling. PMID:33692228
Novel Insights into Quantitative Proteomics from an Innovative Bottom-Up Simple Light Isotope Metabolic (bSLIM) Labeling Data Processing Strategy. PMID:33573382
PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results. PMID:33568339
Proteome-wide profiling and mapping of post translational modifications in human hearts. PMID:33500497
Misincorporation Proteomics Technologies: A Review. PMID:33494504
Development and Comparative Evaluation of Endolysosomal Proximity Labeling-Based Proteomic Methods in Human iPSC-Derived Neurons. PMID:33201688
Global chemical modifications comparison of human plasma proteome from two different age groups. PMID:32929118
Identification of modified peptides using localization-aware open search. PMID:32792501
Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications. PMID:32639981
Absolute quantitative analysis of intact and oxidized amino acids by LC-MS without prior derivatization. PMID:32505089
Crystal-C: A Computational Tool for Refinement of Open Search Results. PMID:32338005
Identifying nucleic acid-associated proteins in Mycobacterium smegmatis by mass spectrometry-based proteomics. PMID:32293251
System-Wide Analysis of Protein Acetylation and Ubiquitination Reveals a Diversified Regulation in Human Cancer Cells. PMID:32155916
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format. PMID:32106352
A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts. PMID:31833756
Proteomics of Long-Lived Mammals. PMID:31737995
2018 YPIC Challenge: A Case Study in Characterizing an Unknown Protein Sample. PMID:31556620
Extremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units. PMID:31448616
Alphabet Projection of Spectra. PMID:31318211
Morph-specific protein patterns in the femoral gland secretions of a colour polymorphic lizard. PMID:31182789
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
TagGraph reveals vast protein modification landscapes from large tandem mass spectrometry datasets. PMID:30936560
Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli. PMID:30886277
psims - A Declarative Writer for mzML and mzIdentML for Python. PMID:30563850
DeltaMass: Automated Detection and Visualization of Mass Shifts in Proteomic Open-Search Results. PMID:30523686
PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome. PMID:30420486
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine. PMID:30295672
Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing. PMID:30184435
Molecular diversity and function of jasmintides from Jasminum sambac. PMID:29996766
ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides. PMID:29848782
The NISTmAb tryptic peptide spectral library for monoclonal antibody characterization. PMID:29425077
ProForma: A Standard Proteoform Notation. PMID:29397739
Significance of a Posttranslational Modification of the PilA Protein of Geobacter sulfurreducens for Surface Attachment, Biofilm Formation, and Growth on Insoluble Extracellular Electron Acceptors. PMID:28138101
Biomonitoring Human Albumin Adducts: The Past, the Present, and the Future. PMID:27989119
jPOSTrepo: an international standard data repository for proteomes. PMID:27899654
Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation. PMID:27734143
Adaptation of Decoy Fusion Strategy for Existing Multi-Stage Search Workflows. PMID:27349255
Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions. PMID:26984886
A high-throughput peptidomic strategy to decipher the molecular diversity of cyclic cysteine-rich peptides. PMID:26965458
Proteomic approaches to uncovering virus-host protein interactions during the progression of viral infection. PMID:26817613
Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides. PMID:26704149
Common errors in mass spectrometry-based analysis of post-translational modifications. PMID:26667783
PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets. PMID:26545397
Software Analysis of Uncorrelated MS1 Peaks for Discovery of Post-Translational Modifications. PMID:26265041
Cyclic Rhamnosylated Elongation Factor P Establishes Antibiotic Resistance in Pseudomonas aeruginosa. PMID:26060278
Mining proteomic data to expose protein modifications in Methanosarcina mazei strain Gö1. PMID:25798134
Quantitative proteomic analysis of histone modifications. PMID:25688442
APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools. PMID:25547515
STRAP PTM: Software Tool for Rapid Annotation and Differential Comparison of Protein Post-Translational Modifications. PMID:25422678
Identification of prolyl hydroxylation modifications in mammalian cell proteins. PMID:25421965
An update on LNCipedia: a database for annotated human lncRNA sequences. PMID:25378313
A standardized framing for reporting protein identifications in mzIdentML 1.2. PMID:25092112
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience. PMID:24980485
Tandem mass spectral libraries of peptides in digests of individual proteins: Human Serum Albumin (HSA). PMID:24889059
Large scale analysis of co-existing post-translational modifications in histone tails reveals global fine structure of cross-talk. PMID:24741113
Initial characterization of histone H3 serine 10 O-acetylation. PMID:23949383
Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML. PMID:23813117
NemR is a bleach-sensing transcription factor. PMID:23536188
From Peptidome to PRIDE: public proteomics data migration at a large scale. PMID:23533138
A novel spectral library workflow to enhance protein identifications. PMID:23391412
PILOT_PROTEIN: identification of unmodified and modified proteins via high-resolution mass spectrometry and mixed-integer linear optimization. PMID:22788846
Post-translational modification of cardiac proteasomes: functional delineation enabled by proteomics. PMID:22523251
Incorporation of noncanonical amino acids into Rosetta and use in computational protein-peptide interface design. PMID:22431978
The mzIdentML data standard for mass spectrometry-based proteomics results. PMID:22375074
Identification of ubiquitin/ubiquitin-like protein modification from tandem mass spectra with various PTMs. PMID:22373085
PPINGUIN: Peptide Profiling Guided Identification of Proteins improves quantitation of iTRAQ ratios. PMID:22340093
Fast multi-blind modification search through tandem mass spectrometry. PMID:22186716
Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations. PMID:22025670
A face in the crowd: recognizing peptides through database search. PMID:21876205
Nano-electrospray tandem mass spectrometric analysis of the acetylation state of histones H3 and H4 in stationary phase in Saccharomyces cerevisiae. PMID:21726436
Preview: a program for surveying shotgun proteomics tandem mass spectrometry data. PMID:21619057
Baking a mass-spectrometry data PIE with McMC and simulated annealing: predicting protein post-translational modifications from integrated top-down and bottom-up data. PMID:21389073
DeltAMT: a statistical algorithm for fast detection of protein modifications from LC-MS/MS data. PMID:21321130
Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research. PMID:20615486
A statistics-based platform for quantitative N-terminome analysis and identification of protease cleavage products. PMID:20305283
TagRecon: high-throughput mutation identification through sequence tagging. PMID:20131910
A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry. PMID:20103568
NCBI Peptidome: a new repository for mass spectrometry proteomics data. PMID:19942688
Finding one's way in proteomics: a protein species nomenclature. PMID:19740416
A guide to the Proteomics Identifications Database proteomics data repository. PMID:19662629
Identification of N-terminally arginylated proteins and peptides by mass spectrometry. PMID:19229197
Blind search for post-translational modifications and amino acid substitutions using peptide mass fingerprints from two proteases. PMID:19099572
Mass spectrometry-based proteomics and peptidomics for biomarker discovery in neurodegenerative diseases. PMID:19079648
PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. PMID:18927104
SeMoP: a new computational strategy for the unrestricted search for modified peptides using LC-MS/MS data. PMID:18686985
In-depth analysis of tandem mass spectrometry data from disparate instrument types. PMID:18653769
Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation. PMID:17690205
Protein identification by spectral networks analysis. PMID:17404225
An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ. PMID:17270041
MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences. PMID:16438723
PRIDE: a public repository of protein and peptide identifications for the proteomics community. PMID:16381953
CLPM: a cross-linked peptide mapping algorithm for mass spectrometric analysis. PMID:16026606
Current literature in mass spectrometry. PMID:15532071 - http://dx.doi.org/10.1002/pmic.200300744
Tags:
Tags
More detailed information about this field from each metasource.
mass spectrometry assay
metasource: Fairsharing.org
version: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
mass spectrometry spectra
metasource: Fairsharing.org
version: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein modification
metasource: Fairsharing.org
version: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.405831
proteomics experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.405831
protein modifications
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:46.405831
Tags
More detailed information about this field from each metasource.
mass spectrometry assay
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
mass spectrometry spectra
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein modification
metasource: Fairsharing.orgversion: FAIRsharing.org: Unimod; Unimod; DOI: https://doi.org/10.25504/FAIRsharing.zZHCUQ; Last edited: June 30, 2021, 10:12 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
proteomics experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
protein modifications
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:46.405831
mass spectrometry assay mass spectrometry spectra protein protein modification proteomics proteomics experiment protein modifications
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