Colorectal Cancer Atlas
Names
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Colorectal Cancer Atlas
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
CRC Atlas
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
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Colorectal Cancer Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
CRC Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
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Colorectal Cancer Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
CRC Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Colorectral Cancer Atlas is an web-based resource which integrates genomic and proteomic pertaining to colorectal cancer cell lines and tissues. Data catalogued includes, quantitative and non-quantitative protein expression, sequence variations, cellular signaling pathways, protein-protein interactions, Gene Ontology terms, protein domains and post-translational modifications (PTMs).
Description
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Colorectral Cancer Atlas is an web-based resource which integrates genomic and proteomic pertaining to colorectal cancer cell lines and tissues. Data catalogued includes, quantitative and non-quantitative protein expression, sequence variations, cellular signaling pathways, protein-protein interactions, Gene Ontology terms, protein domains and post-translational modifications (PTMs).
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Colorectral Cancer Atlas is an web-based resource which integrates genomic and proteomic pertaining to colorectal cancer cell lines and tissues.Data catalogued includes, quantitative and non-quantitative protein expression, sequence variations, cellular signaling pathways, protein-protein interactions, Gene Ontology terms, protein domains and post-translational modifications (PTMs). Currently, Colorectal Cancer Atlas contains data for >13,711 primary CRC tissues, >165 CRC cell lines, 53,341 protein identifications, >8.3 million MS/MS spectra, >18,410 genes with sequence variations, 404,278 sequence variation entries, 351 pathways with sequence variants, 88,819 PTMs and 253,700 protein-protein interactions.Data curated in Colorectal Cancer Atlas is available as tab-delimited files and is free for download to all users. Using the custom database option, the tabdelimited data can also be uploaded into FunRich, a functional enrichment analysis tool to identify classes of genes/proteins that are overrepresented in a specific category. Users can send their comments and suggestion directly at http://www.colonatlas.org/contactus.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://colonatlas.org/Webpage
More detailed information about this field from each metasource.
http://colonatlas.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.colonatlas.org
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
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Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues
PMID: 26496946
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkv1097
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues
PMID: 26496946
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkv1097
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues
PubMed citations: 26.
26 articles citing: Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues
TCGA-My: A Systematic Repository for Systems Biology of Malaysian Colorectal Cancer. PMID:35743803
Exosome Carrier Effects; Resistance to Digestion in Phagolysosomes May Assist Transfers to Targeted Cells; II Transfers of miRNAs Are Better Analyzed via Systems Approach as They Do Not Fit Conventional Reductionist Stoichiometric Concepts. PMID:35682875
Identification of key candidate genes and pathways associated with colorectal aberrant crypt foci-to-adenoma-to-carcinoma progression. PMID:35154601
Clustering of Tir during enteropathogenic E. coli infection triggers calcium influx-dependent pyroptosis in intestinal epithelial cells. PMID:33378358
Genomic variation as a marker of response to neoadjuvant therapy in locally advanced rectal cancer. PMID:32391418
A High-Resolution Mass Spectrometry-Based Quantitative Metabolomic Workflow Highlights Defects in 5-Fluorouracil Metabolism in Cancer Cells with Acquired Chemoresistance. PMID:32384705
Identification of Autophagy-Associated Biomarkers and Corresponding Regulatory Factors in the Progression of Colorectal Cancer. PMID:32265986
CancerLivER: a database of liver cancer gene expression resources and biomarkers. PMID:32147717
The proprotein convertase furin is a pro-oncogenic driver in KRAS and BRAF driven colorectal cancer. PMID:32139876
A network view of microRNA and gene interactions in different pathological stages of colon cancer. PMID:31888617
An in vivo RNAi screen uncovers the role of AdoR signaling and adenosine deaminase in controlling intestinal stem cell activity. PMID:31852821
Extracellular vesicles containing oncogenic mutant β-catenin activate Wnt signalling pathway in the recipient cells. PMID:31819794
G-quadruplex located in the 5'UTR of the BAG-1 mRNA affects both its cap-dependent and cap-independent translation through global secondary structure maintenance. PMID:31504805
Inferring novel genes related to colorectal cancer via random walk with restart algorithm. PMID:31308477
Locally advanced rectal cancer transcriptomic-based secretome analysis reveals novel biomarkers useful to identify patients according to neoadjuvant chemoradiotherapy response. PMID:31213644
Activation of Epithelial-Mesenchymal Transition and Altered β-Catenin Signaling in a Novel Indian Colorectal Carcinoma Cell Line. PMID:30828563
Post-translational modifications of prostaglandin-endoperoxide synthase 2 in colorectal cancer: An update. PMID:30622375
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
dbDEPC 3.0: the database of differentially expressed proteins in human cancer with multi-level annotation and drug indication. PMID:29688359
The response to neoadjuvant chemoradiotherapy with 5-fluorouracil in locally advanced rectal cancer patients: a predictive proteomic signature. PMID:29681787
Epistasis analysis of microRNAs on pathological stages in colon cancer based on an Empirical Bayesian Elastic Net method. PMID:29513198
Somatic APC mosaicism and oligogenic inheritance in genetically unsolved colorectal adenomatous polyposis patients. PMID:29367705
Integrating Next-Generation Genomic Sequencing and Mass Spectrometry To Estimate Allele-Specific Protein Abundance in Human Brain. PMID:28691493
Application of open-access databases to determine functional connectivity between resveratrol-binding protein QR2 and colorectal carcinoma. PMID:28646291
Identification of cancer risk lncRNAs and cancer risk pathways regulated by cancer risk lncRNAs based on genome sequencing data in human cancers. PMID:27991568
Alternative splicing of U2AF1 reveals a shared repression mechanism for duplicated exons. PMID:27566151 - http://dx.doi.org/10.1093/nar/gkv1097
Tags:
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cancer
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
drug report
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
extracellular exosome
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
mutation analysis
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
post-translational protein modification
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
cancer gene databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
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cancer
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
drug report
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
extracellular exosome
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
mutation analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
post-translational protein modification
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: CRC Atlas; Colorectal Cancer Atlas; DOI: https://doi.org/10.25504/FAIRsharing.5mf7bd; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
cancer gene databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
cancer drug report extracellular exosome mutation analysis post-translational protein modification protein human genes and diseases cancer-related genes
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