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plantannot

The Plant Co-expression Annotation Resource, or plantannot in short, is a system developed to find proteins that have no annotation or function assigned (PUFs, or Proteins of Unknown Function) and could be related to molecular mechanisms regarding abiotic stresses in plants. The systems aggregates orthology, coexpression networks and genomic data to filter the genomes of 53 plants (downloaded from Phytozome and NCBI) and select candidate proteins in that regard.

Description

More detailed information about this field from each metasource.

The Plant Co-expression Annotation Resource, or plantannot in short, is a system developed to find proteins that have no annotation or function assigned (PUFs, or Proteins of Unknown Function) and could be related to molecular mechanisms regarding abiotic stresses in plants. The systems aggregates orthology, coexpression networks and genomic data to filter the genomes of 53 plants (downloaded from Phytozome and NCBI) and select candidate proteins in that regard.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:26.811352

Webpage:

https://www.machado.cnptia.embrapa.br/plantannot2

Webpage

More detailed information about this field from each metasource.

https://www.machado.cnptia.embrapa.br/plantannot2

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:26.811352

Licence:

Name: GPL-3.0

Licence name

More detailed information about this field from each metasource.

GPL-3.0

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:26.811352

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1101/2020.05.22.110510
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:26.811352

http://dx.doi.org/10.1186/s12859-020-03792-z
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:26.811352

http://dx.doi.org/10.1101/2020.05.22.110510
http://dx.doi.org/10.1186/s12859-020-03792-z

Tags:

Tags
More detailed information about this field from each metasource.

omics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:26.811352

bioinformatics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:26.811352

biological databases
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:26.811352

omics bioinformatics biological

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Service status

Reach us:
[email protected]

Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine