HumanMine: advanced data searching, analysis and cross-species comparison.
PMID:35820040
Construction of Multiscale Genome-Scale Metabolic Models: Frameworks and Challenges.
PMID:35625648
Zebrafish information network, the knowledgebase for Danio rerio research.
PMID:35166825
Gene family evolution underlies cell-type diversification in the hypothalamus of teleosts.
PMID:34824389
Genome-wide approaches delineate the additive, epistatic, and pleiotropic nature of variants controlling fatty acid composition in peanut (Arachis hypogaea L.).
PMID:34751378
Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses.
PMID:34747465
Mouse Genome Informatics (MGI): latest news from MGD and GXD.
PMID:34698891
A PostgreSQL Tripal solution for large-scale genotypic and phenotypic data.
PMID:34389844
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility.
PMID:34329465
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms.
PMID:34318308
The GEnetic Syntax Score: a genetic risk assessment implementation tool grading the complexity of coronary artery disease-rationale and design of the GESS study.
PMID:34103005
Advantages of using graph databases to explore chromatin conformation capture experiments.
PMID:33902433
DDK regulates replication initiation by controlling the multiplicity of Cdc45-GINS binding to Mcm2-7.
PMID:33616038
Signalling pathways and mechanistic cues highlighted by transcriptomic analysis of primordial, primary, and secondary ovarian follicles in domestic cat.
PMID:33514822
The human O-GlcNAcome database and meta-analysis.
PMID:33479245
Elucidating the network features and evolutionary attributes of intra- and interspecific protein-protein interactions between human and pathogenic bacteria.
PMID:33420198
Towards a unified open access dataset of molecular interactions.
PMID:33262342
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database.
PMID:33193550
FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update.
PMID:33104800
Nucleoporin TPR is an integral component of the TREX-2 mRNA export pathway.
PMID:32917881
COVID-WAREHOUSE: A Data Warehouse of Italian COVID-19, Pollution, and Climate Data.
PMID:32756428
Genome-wide investigation of gene-cancer associations for the prediction of novel therapeutic targets in oncology.
PMID:32612205
Differential regulation of lineage commitment in human and mouse primed pluripotent stem cells by the nucleosome remodelling and deacetylation complex.
PMID:32535494
Loss-of-function variants in C3ORF52 result in localized autosomal recessive hypotrichosis.
PMID:32336749
DNA methylation QTL analysis identifies new regulators of human longevity.
PMID:32160291
A population genomics appraisal suggests independent dispersals for bitter and sweet manioc in Brazilian Amazonia.
PMID:31993081
Faint gray bands in Drosophila melanogaster polytene chromosomes are formed by coding sequences of housekeeping genes.
PMID:31820086
Investigating the energy crisis in Alzheimer disease using transcriptome study.
PMID:31811163
ILF3 contributes to the establishment of the antiviral type I interferon program.
PMID:31701124
The TargetMine Data Warehouse: Enhancement and Updates.
PMID:31649722
Bovine Genome Database: new annotation tools for a new reference genome.
PMID:31647100
Chemogenomic study of gemcitabine using Saccharomyces cerevisiae as model cell-molecular insights about chemoresistance.
PMID:31515725
Transgenerational Self-Reconstruction of Disrupted Chromatin Organization After Exposure To An Environmental Stressor in Mice.
PMID:31506492
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.
PMID:31328773
Core transcriptional signatures of phase change in the migratory locust.
PMID:31292921
From observing to predicting single-cell structure and function with high-throughput/high-content microscopy.
PMID:31243141
Predicting Metabolism from Gene Expression in an Improved Whole-Genome Metabolic Network Model of Danio rerio.
PMID:31216234
GeneNoteBook, a collaborative notebook for comparative genomics.
PMID:31199463
Application of image-based phenotyping tools to identify QTL for in-field winter survival of winter wheat (Triticum aestivum L.).
PMID:31177292
NetR and AttR, Two New Bioinformatic Tools to Integrate Diverse Datasets into Cytoscape Network and Attribute Files.
PMID:31159440
Hidden in plain sight: what remains to be discovered in the eukaryotic proteome?
PMID:30938578
RepetDB: a unified resource for transposable element references.
PMID:30719103
InterMineR: an R package for InterMine databases.
PMID:30668641
HPV, tumour metabolism and novel target identification in head and neck squamous cell carcinoma.
PMID:30655616
Integrated omics profiling reveals novel patterns of epigenetic programming in cancer-associated myofibroblasts.
PMID:30624614
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy.
PMID:30500839
BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources.
PMID:30458802
MaizeGDB 2018: the maize multi-genome genetics and genomics database.
PMID:30407532
A pan-cancer analysis of driver gene mutations, DNA methylation and gene expressions reveals that chromatin remodeling is a major mechanism inducing global changes in cancer epigenomes.
PMID:30400878
MitoMiner v4.0: an updated database of mitochondrial localization evidence, phenotypes and diseases.
PMID:30398659
Dysregulated gene expression predicts tumor aggressiveness in African-American prostate cancer patients.
PMID:30397274
Arena-Idb: a platform to build human non-coding RNA interaction networks.
PMID:30367585
ZFLNC: a comprehensive and well-annotated database for zebrafish lncRNA.
PMID:30335154
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
PMID:30239679
Cell surface nucleolin interacts with and internalizes Bothrops asper Lys49 phospholipase A2 and mediates its toxic activity.
PMID:30006575
Loss of tumor suppressor IGFBP4 drives epigenetic reprogramming in hepatic carcinogenesis.
PMID:29992318
Remodeling of the Acetylproteome by SIRT3 Manipulation Fails to Affect Insulin Secretion or β Cell Metabolism in the Absence of Overnutrition.
PMID:29972782
Genomic atlas of the human plasma proteome.
PMID:29875488
TelNet - a database for human and yeast genes involved in telomere maintenance.
PMID:29776332
Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes.
PMID:29761466
Mapping the tumour human leukocyte antigen (HLA) ligandome by mass spectrometry.
PMID:29658117
JAMI: a Java library for molecular interactions and data interoperability.
PMID:29642846
Analysis of Combined Transcriptomes Identifies Gene Modules that Differentially Respond to Pathogenic Stimulation of Vascular Smooth Muscle and Endothelial Cells.
PMID:29321689
Chromatin state changes during neural development revealed by in vivo cell-type specific profiling.
PMID:29273756
ComplexViewer: visualization of curated macromolecular complexes.
PMID:29036573
Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse.
PMID:28838066
Early-onset torsion dystonia: a novel high-throughput yeast genetic screen for factors modifying protein levels of torsinAΔE.
PMID:28768697
A Drosophila model for toxicogenomics: Genetic variation in susceptibility to heavy metal exposure.
PMID:28732062
Gene2Function: An Integrated Online Resource for Gene Function Discovery.
PMID:28663344
Identifying Cell Subpopulations and Their Genetic Drivers from Single-Cell RNA-Seq Data Using a Biclustering Approach.
PMID:28657835
Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes.
PMID:28609292
CHOmine: an integrated data warehouse for CHO systems biology and modeling.
PMID:28605771
Interactive Toxicogenomics: Gene set discovery, clustering and analysis in Toxygates.
PMID:28469246
Protein and Genetic Composition of Four Chromatin Types in Drosophila melanogaster Cell Lines.
PMID:28367077
Curated protein information in the Saccharomyces genome database.
PMID:28365727
Integrative Comparison of mRNA Expression Patterns in Breast Cancers from Caucasian and Asian Americans with Implications for Precision Medicine.
PMID:28069798
TBro: visualization and management of de novo transcriptomes.
PMID:28025338
The Genome Conformation As an Integrator of Multi-Omic Data: The Example of Damage Spreading in Cancer.
PMID:27895661
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado.
PMID:26989146
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework.
PMID:26989145
Mouse genome database 2016.
PMID:26578600
WormBase 2016: expanding to enable helminth genomic research.
PMID:26578572
PlanMine--a mineable resource of planarian biology and biodiversity.
PMID:26578570
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine.
PMID:26578564
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.
PMID:26546515
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome.
PMID:26481361
Mouse Genome Informatics (MGI): reflecting on 25 years.
PMID:26238262
Anatomy of BioJS, an open source community for the life sciences.
PMID:26153621
toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research.
PMID:26130662
Cross-organism analysis using InterMine.
PMID:26097192
ZFIN, The zebrafish model organism database: Updates and new directions.
PMID:26097180
MouseMine: a new data warehouse for MGI.
PMID:26092688
dictyBase 2015: Expanding data and annotations in a new software environment.
PMID:26088819
The mouse gene expression database: New features and how to use them effectively.
PMID:26045019
Clinical decision support systems for improving diagnostic accuracy and achieving precision medicine.
PMID:25834725
Web resources for model organism studies.
PMID:25707592
The BioJS article collection of open source components for biological data visualisation.
PMID:25580221
Araport: the Arabidopsis information portal.
PMID:25414324
esyN: network building, sharing and publishing.
PMID:25181461
Mining a database of single amplified genomes from Red Sea brine pool extremophiles-improving reliability of gene function prediction using a profile and pattern matching algorithm (PPMA).
PMID:24778629
InterMine: extensive web services for modern biology.
PMID:24753429
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins.
PMID:24723265
Obesity-associated variants within FTO form long-range functional connections with IRX3.
PMID:24646999
BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs.
PMID:24627804
INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.
PMID:24324765
WormBase 2014: new views of curated biology.
PMID:24194605
Astrogenomics: big data, old problems, old solutions?
PMID:23953643
metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research.
PMID:23935057
Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE.
PMID:23875683
Tuning the dials of Synthetic Biology.
PMID:23704788
InterMOD: integrated data and tools for the unification of model organism research.
PMID:23652793
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.
PMID:23398680
The YeastGenome app: the Saccharomyces Genome Database at your fingertips.
PMID:23396302