Vertebrate Gene Nomenclature Committee
Names
More detailed information about this field from each metasource.
Vertebrate Gene Nomenclature Committee
metasource: Fairsharing.org
version: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
VGNC
metasource: Fairsharing.org
version: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Vertebrate Gene Nomenclature Committee
metasource: Fairsharing.orgversion: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
VGNC
metasource: Fairsharing.orgversion: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Vertebrate Gene Nomenclature Committee
metasource: Fairsharing.orgversion: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
VGNC
metasource: Fairsharing.orgversion: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee. The VGNC also coordinates with the 6 existing vertebrate nomenclature committees, MGNC (mouse), RGNC (rat), CGNC (chicken), AGNC (Anole green lizard), XNC (Xenopus frog) and ZNC (zebrafish), to ensure genes are named in line with their human homologs.
Description
More detailed information about this field from each metasource.
The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee. The VGNC also coordinates with the 6 existing vertebrate nomenclature committees, MGNC (mouse), RGNC (rat), CGNC (chicken), AGNC (Anole green lizard), XNC (Xenopus frog) and ZNC (zebrafish), to ensure genes are named in line with their human homologs.
metasource: Fairsharing.orgversion: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
https://vertebrate.genenames.org/Webpage
More detailed information about this field from each metasource.
https://vertebrate.genenames.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Genenames.org: the HGNC and VGNC resources in 2017
PMID: 27799471
metasource: Fairsharing.org
version: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Genenames.org: the HGNC and VGNC resources in 2019
PMID: 30304474
metasource: Fairsharing.org
version: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
Genenames.org: the HGNC and VGNC resources in 2017
PMID: 27799471
metasource: Fairsharing.org
version: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Genenames.org: the HGNC and VGNC resources in 2019
PMID: 30304474
metasource: Fairsharing.org
version: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
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Genenames.org: the HGNC and VGNC resources in 2017
PubMed citations: 164.
164 articles citing: Genenames.org: the HGNC and VGNC resources in 2017
Mitochondrial Ribosome Dysfunction in Human Alveolar Type II Cells in Emphysema. PMID:35884802
DES-Amyloidoses "Amyloidoses through the looking-glass": A knowledgebase developed for exploring and linking information related to human amyloid-related diseases. PMID:35877764
Follistatin-like 1 and its paralogs in heart development and cardiovascular disease. PMID:35867287
OncoboxPD: human 51 672 molecular pathways database with tools for activity calculating and visualization. PMID:35615022
Impaired phosphate transport in SLC34A2 variants in patients with pulmonary alveolar microlithiasis. PMID:35443721
A single-cell regulatory map of postnatal lung alveologenesis in humans and mice. PMID:35434692
B4GALT5 high expression associated with poor prognosis of hepatocellular carcinoma. PMID:35410157
Gene Expression-Based Signature Can Predict Sorafenib Response in Kidney Cancer. PMID:35359606
Silencing of lncRNA CHRM3-AS2 Expression Exerts Anti-Tumour Effects Against Glioma via Targeting microRNA-370-5p/KLF4. PMID:35359381
Pulmonary surfactant protein B carried by HDL predicts incident CVD in patients with type 1 diabetes. PMID:35300983
The EurOPDX Data Portal: an open platform for patient-derived cancer xenograft data sharing and visualization. PMID:35193494
The Genome of the "Sea Vomit" Didemnum vexillum. PMID:34947908
Labour classified by cervical dilatation & fetal membrane rupture demonstrates differential impact on RNA-seq data for human myometrium tissues. PMID:34797869
SeekFusion - A Clinically Validated Fusion Transcript Detection Pipeline for PCR-Based Next-Generation Sequencing of RNA. PMID:34745213
Lung Microenvironments and Disease Progression in Fibrotic Hypersensitivity Pneumonitis. PMID:34724391
Interpretation of cancer mutations using a multiscale map of protein systems. PMID:34591613
Human cytomegalovirus expands a CD8+ T cell population with loss of BCL11B expression and gain of NK cell identity. PMID:34559552
A domain damage index to prioritizing the pathogenicity of missense variants. PMID:34350656
SISTEMA: A large and standardized collection of transcriptome data sets for human pluripotent stem cell research. PMID:34278269
Talin rod domain-containing protein 1 (TLNRD1) is a novel actin-bundling protein which promotes filopodia formation. PMID:34264272
DES-Tcell is a knowledgebase for exploring immunology-related literature. PMID:34253812
Niacin Increases Atherogenic Proteins in High-Density Lipoprotein of Statin-Treated Subjects. PMID:34134520
R2DT is a framework for predicting and visualising RNA secondary structure using templates. PMID:34108470
Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease. PMID:34012061
Identification of upregulated NF-κB inhibitor alpha and IRAK3 targeting lncRNA following intracranial aneurysm rupture-induced subarachnoid hemorrhage. PMID:33990177
Analysis of Zika virus capsid-Aedes aegypti mosquito interactome reveals pro-viral host factors critical for establishing infection. PMID:33986255
Genoppi is an open-source software for robust and standardized integration of proteomic and genetic data. PMID:33972534
A resource to explore the discovery of rare diseases and their causative genes. PMID:33947870
Machine Learning Applicability for Classification of PAD/VCD Chemotherapy Response Using 53 Multiple Myeloma RNA Sequencing Profiles. PMID:33937058
Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants. PMID:33909605
Laboratory testing for fragile X, 2021 revision: a technical standard of the American College of Medical Genetics and Genomics (ACMG). PMID:33795824
DNA repair pathway activation features in follicular and papillary thyroid tumors, interrogated using 95 experimental RNA sequencing profiles. PMID:33748479
Global DNA hypermethylation pattern and unique gene expression signature in liver cancer from patients with Indigenous American ancestry. PMID:33747361
Extracellular signal-regulated kinase regulates microglial immune responses in Alzheimer's disease. PMID:33729626
A ligand-receptor interactome platform for discovery of pain mechanisms and therapeutic targets. PMID:33727337
HIR V2: a human interactome resource for the biological interpretation of differentially expressed genes via gene set linkage analysis. PMID:33677507
Single-cell transcriptomic profiling and characterization of endothelial progenitor cells: new approach for finding novel markers. PMID:33627177
Factorial study of the RNA-seq computational workflow identifies biases as technical gene signatures. PMID:33575596
HGNChelper: identification and correction of invalid gene symbols for human and mouse. PMID:33564398
Genetic history of Calabrian Greeks reveals ancient events and long term isolation in the Aspromonte area of Southern Italy. PMID:33542324
My personal mutanome: a computational genomic medicine platform for searching network perturbing alleles linking genotype to phenotype. PMID:33514395
Minimal genome-wide human CRISPR-Cas9 library. PMID:33478580
DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics. PMID:33382035
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling. PMID:33378765
Identification of inflammation‑associated circulating long non‑coding RNAs and genes in intracranial aneurysm rupture‑induced subarachnoid hemorrhage. PMID:33174039
Genenames.org: the HGNC and VGNC resources in 2021. PMID:33152070
Toward Preparing a Knowledge Base to Explore Potential Drugs and Biomedical Entities Related to COVID-19: Automated Computational Approach. PMID:33055059
Protein ontology on the semantic web for knowledge discovery. PMID:33046717
Pulmonary alveolar microlithiasis: no longer in the stone age. PMID:32964001
High expression of MKK3 is associated with worse clinical outcomes in African American breast cancer patients. PMID:32873298
A Human IgSF Cell-Surface Interactome Reveals a Complex Network of Protein-Protein Interactions. PMID:32822567
Glucose Availability Alters Gene and Protein Expression of Several Newly Classified and Putative Solute Carriers in Mice Cortex Cell Culture and D. melanogaster. PMID:32733888
A Pharmacological Interactome between COVID-19 Patient Samples and Human Sensory Neurons Reveals Potential Drivers of Neurogenic Pulmonary Dysfunction. PMID:32714114
Weighed Gene Coexpression Network Analysis Screens the Potential Long Noncoding RNAs and Genes Associated with Progression of Coronary Artery Disease. PMID:32695216
Single-cell RNA sequencing reveals cell type- and artery type-specific vascular remodelling in male spontaneously hypertensive rats. PMID:32589721
Differential methylation and expression of genes in the hypoxia-inducible factor 1 signaling pathway are associated with paclitaxel-induced peripheral neuropathy in breast cancer survivors and with preclinical models of chemotherapy-induced neuropathic pain. PMID:32586194
Microtubule Organization in Striated Muscle Cells. PMID:32503326
A pharmacological interactome between COVID-19 patient samples and human sensory neurons reveals potential drivers of neurogenic pulmonary dysfunction. PMID:32497778
Evaluating drug targets through human loss-of-function genetic variation. PMID:32461653
Exosomal Long Non-Coding RNAs in Lung Diseases. PMID:32438606
A risk score system based on DNA methylation levels and a nomogram survival model for lung squamous cell carcinoma. PMID:32377703
Nuclear-encoded mitochondrial ribosomal proteins are required to initiate gastrulation. PMID:32376682
Towards the routine use of in silico screenings for drug discovery using metabolic modelling. PMID:32369553
DES-ROD: Exploring Literature to Develop New Links between RNA Oxidation and Human Diseases. PMID:32308806
Active constituents and mechanisms of Respiratory Detox Shot, a traditional Chinese medicine prescription, for COVID-19 control and prevention: Network-molecular docking-LC-MSE analysis. PMID:32307268
A unified nomenclature for vertebrate olfactory receptors. PMID:32295537
Design and analysis of CRISPR-Cas experiments. PMID:32284587
Automated gene data integration with Databio. PMID:32238171
CRISPR/Cas9-Mediated Genome Editing Reveals Oosp Family Genes are Dispensable for Female Fertility in Mice. PMID:32231122
Evidence of constraint in the 3D genome for trans-splicing in human cells. PMID:32221814
Hepamine - A Liver Disease Microarray Database, Visualization Platform and Data-Mining Resource. PMID:32179762
Effects of High-Dose Ionizing Radiation in Human Gene Expression: A Meta-Analysis. PMID:32178397
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data. PMID:32142370
Evolutionary Dynamics of the POTE Gene Family in Human and Nonhuman Primates. PMID:32085667
Oxidative Stress in Canine Histiocytic Sarcoma Cells Induced by an Infection with Canine Distemper Virus Led to a Dysregulation of HIF-1α Downstream Pathway Resulting in a Reduced Expression of VEGF-B in vitro. PMID:32054075
NANOG expression in human development and cancerogenesis. PMID:32041418
ABC transporters control ATP release through cholesterol-dependent volume-regulated anion channel activity. PMID:31988241
Mutation Enrichment and Transcriptomic Activation Signatures of 419 Molecular Pathways in Cancer. PMID:31979117
Identification of pathogenic variant enriched regions across genes and gene families. PMID:31871067
The Emerging Role of Gβ Subunits in Human Genetic Diseases. PMID:31817184
Lithium alters expression of RNAs in a type-specific manner in differentiated human neuroblastoma neuronal cultures, including specific genes involved in Alzheimer's disease. PMID:31797941
The integrative knowledge base for miRNA-mRNA expression in colorectal cancer. PMID:31792281
Screening potential prognostic biomarkers of long non-coding RNAs for predicting the risk of chronic kidney disease. PMID:31721901
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform. PMID:31713623
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal. PMID:31713622
Cisplatin-resistant triple-negative breast cancer subtypes: multiple mechanisms of resistance. PMID:31684899
Paralog buffering contributes to the variable essentiality of genes in cancer cell lines. PMID:31652272
Inhibition of JAK-STAT Signaling with Baricitinib Reduces Inflammation and Improves Cellular Homeostasis in Progeria Cells. PMID:31635416
snoDB: an interactive database of human snoRNA sequences, abundance and interactions. PMID:31598696
X-chromosome-linked miR548am-5p is a key regulator of sex disparity in the susceptibility to mitochondria-mediated apoptosis. PMID:31511496
Why digital medicine depends on interoperability. PMID:31453374
Transcriptome and Network Dissection of Microsatellite Stable and Highly Instable Colorectal Cancer. PMID:31450919
Global Text Mining and Development of Pharmacogenomic Knowledge Resource for Precision Medicine. PMID:31447668
Exploring the molecular basis of neuronal excitability in a vocal learner. PMID:31375088
A Web Tool for Ranking Candidate Drugs Against a Selected Disease Based on a Combination of Functional and Structural Criteria. PMID:31360332
Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. PMID:31348891
Enzymatic Logic of Ubiquitin Chain Assembly. PMID:31333493
PhenPath: a tool for characterizing biological functions underlying different phenotypes. PMID:31307376
The Generation of a Comprehensive Spectral Library for the Analysis of the Guinea Pig Proteome by SWATH-MS. PMID:31301205
Landscape of innate immune system transcriptome and acute T cell-mediated rejection of human kidney allografts. PMID:31292297
GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature. PMID:31260503
FunSet: an open-source software and web server for performing and displaying Gene Ontology enrichment analysis. PMID:31248361
Non-Invasive Biomarkers for Celiac Disease. PMID:31234270
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language. PMID:31225582
Literature-Based Enrichment Insights into Redox Control of Vascular Biology. PMID:31223421
Gene Information eXtension (GIX): effortless retrieval of gene product information on any website. PMID:31217594
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision. PMID:31199464
SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse. PMID:31171447
MTR-Viewer: identifying regions within genes under purifying selection. PMID:31170280
Integrative Analysis of Somatic Mutations in Non-coding Regions Altering RNA Secondary Structures in Cancer Genomes. PMID:31160636
Tissue-specific genes as an underutilized resource in drug discovery. PMID:31076736
Exploration of prognosis-related microRNA and transcription factor co-regulatory networks across cancer types. PMID:31046554
Screening for mutations in selected miRNA genes in hypogonadotropic hypogonadism patients. PMID:30999277
Selective translational usage of TSS and core promoters revealed by translatome sequencing. PMID:30987607
A network of human functional gene interactions from knockout fitness screens in cancer cells. PMID:30979825
INKA, an integrative data analysis pipeline for phosphoproteomic inference of active kinases. PMID:30979792
EFCAB2 is a novel calcium-binding protein in mouse testis and sperm. PMID:30933994
Late-onset Leber's hereditary optic neuropathy: the role of environmental factors in hereditary diseases. PMID:30898963
Mutations in DNA repair genes are associated with increased neoantigen burden and a distinct immunophenotype in lung squamous cell carcinoma. PMID:30824826
Identification of biomarkers associated with the recurrence of osteosarcoma using ceRNA regulatory network analysis. PMID:30816442
Modulation of cell adhesion and migration through regulation of the immunoglobulin superfamily member ALCAM/CD166. PMID:30778704
deepDriver: Predicting Cancer Driver Genes Based on Somatic Mutations Using Deep Convolutional Neural Networks. PMID:30761181
LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs. PMID:30759219
NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans. PMID:30744685
Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials. PMID:30622555
SIX2 Mediates Late-Stage Metastasis via Direct Regulation of SOX2 and Induction of a Cancer Stem Cell Program. PMID:30606720
HIV Disease Progression: Overexpression of the Ectoenzyme CD38 as a Contributory Factor? PMID:30537007
PDX Finder: A portal for patient-derived tumor xenograft model discovery. PMID:30535239
RefSeq curation and annotation of stop codon recoding in vertebrates. PMID:30535227
Genetic variants of erythropoietin (EPO) and EPO receptor genes in familial erythrocytosis. PMID:30507031
Ontology-based validation and identification of regulatory phenotypes. PMID:30423068
PreMedKB: an integrated precision medicine knowledgebase for interpreting relationships between diseases, genes, variants and drugs. PMID:30407536
The protein interaction networks of mucolipins and two-pore channels. PMID:30395881
RNAcentral: a hub of information for non-coding RNA sequences. PMID:30395267
DrugThatGene: integrative analysis to streamline the identification of druggable genes, pathways and protein complexes from CRISPR screens. PMID:30395160
COSMIC: the Catalogue Of Somatic Mutations In Cancer. PMID:30371878
LNCipedia 5: towards a reference set of human long non-coding RNAs. PMID:30371849
PubChem 2019 update: improved access to chemical data. PMID:30371825
Re-thinking Alzheimer's disease therapeutic targets using gene-based tests. PMID:30314892
Multimodal network diffusion predicts future disease-gene-chemical associations. PMID:30304494
Genenames.org: the HGNC and VGNC resources in 2019. PMID:30304474
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. PMID:30120140
Challenges of Connecting Chemistry to Pharmacology: Perspectives from Curating the IUPHAR/BPS Guide to PHARMACOLOGY. PMID:30087946
Loose ends: almost one in five human genes still have unresolved coding status. PMID:29982784
Non-classical monocytes as mediators of tissue destruction in arthritis. PMID:29959183
Sequence diversity of tubulin isotypes in regulation of the mitochondrial voltage-dependent anion channel. PMID:29777059
TelNet - a database for human and yeast genes involved in telomere maintenance. PMID:29776332
Using FlyBase to Find Functionally Related Drosophila Genes. PMID:29761468
Systematic identification of latent disease-gene associations from PubMed articles. PMID:29373609
ClinVar: improving access to variant interpretations and supporting evidence. PMID:29165669
The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY. PMID:29149325
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments. PMID:29126285
ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins. PMID:29126202
Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation. PMID:29126148
Interactive phenotyping of large-scale histology imaging data with HistomicsML. PMID:29109450
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces. PMID:29106550
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease. PMID:29069510
EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. PMID:28985416
VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions. PMID:28967166
Gestational diabetes exacerbates maternal immune activation effects in the developing brain. PMID:28948973
eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes. PMID:28812536
Naming CRISPR alleles: endonuclease-mediated mutation nomenclature across species. PMID:28589392
MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome. PMID:28502612
BRIDG: a domain information model for translational and clinical protocol-driven research. PMID:28339791 -
Genenames.org: the HGNC and VGNC resources in 2019
PubMed citations: 159.
159 articles citing: Genenames.org: the HGNC and VGNC resources in 2019
PheNominal: an EHR-integrated web application for structured deep phenotyping at the point of care. PMID:35902925
The Aminoacyl-tRNA Synthetase and tRNA Expression Levels Are Deregulated in Cancer and Correlate Independently with Patient Survival. PMID:35877431
The Big Picture of Neurodegeneration: A Meta Study to Extract the Essential Evidence on Neurodegenerative Diseases in a Network-Based Approach. PMID:35832065
A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling. PMID:35729113
High-intensity interval training remodels the proteome and acetylome of human skeletal muscle. PMID:35638262
Pan-cancer analyses reveal the genetic and pharmacogenomic landscape of transient receptor potential channels. PMID:35614079
Framework of Intrinsic Immune Landscape of Dormant Prostate Cancer. PMID:35563856
NIBAN1, Exploring its Roles in Cell Survival Under Stress Context. PMID:35517496
Extracting functional insights from loss-of-function screens using deep link prediction. PMID:35474966
Bioinformatic Challenges Detecting Genetic Variation in Precision Medicine Programs. PMID:35463004
Scaling up oligogenic diseases research with OLIDA: the Oligogenic Diseases Database. PMID:35411390
Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content. PMID:35388368
The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework. PMID:35295213
Computing microRNA-gene interaction networks in pan-cancer using miRDriver. PMID:35260634
Computational Resources for the Interpretation of Variations in Cancer. PMID:35230689
c-Met and EPHA7 Receptor Tyrosine Kinases Are Related to Prognosis in Clear Cell Renal Cell Carcinoma: Focusing on the Association with Myoferlin Expression. PMID:35205843
Single-cell RNA sequencing reveals time- and sex-specific responses of mouse spinal cord microglia to peripheral nerve injury and links ApoE to chronic pain. PMID:35149686
A platform for oncogenomic reporting and interpretation. PMID:35140225
In silico prediction of HIV-1-host molecular interactions and their directionality. PMID:35134057
Alzheimer's Disease Variant Portal: A Catalog of Genetic Findings for Alzheimer's Disease. PMID:35068457
Diffusion kernel-based predictive modeling of KRAS dependency in KRAS wild type cancer cell lines. PMID:35046405
ClinGen Variant Curation Interface: a variant classification platform for the application of evidence criteria from ACMG/AMP guidelines. PMID:35039090
Meta-analysis of whole-genome gene expression datasets assessing the effects of IDH1 and IDH2 mutations in isogenic disease models. PMID:34997121
Long Non-Coding RNA- Associated Competing Endogenous RNA Axes in T-Cells in Multiple Sclerosis. PMID:34956196
Bioinformatics analysis of long non-coding RNA-associated competing endogenous RNA network in schizophrenia. PMID:34952924
Malaria protection due to sickle haemoglobin depends on parasite genotype. PMID:34883497
A Standardized Brain Molecular Atlas: A Resource for Systems Modeling and Simulation. PMID:34858137
Yersinia remodels epigenetic histone modifications in human macrophages. PMID:34793580
CyFi-MAP: an interactive pathway-based resource for cystic fibrosis. PMID:34782688
LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. PMID:34751395
Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review. PMID:34721526
BrainBase: a curated knowledgebase for brain diseases. PMID:34718720
Comparability of reference-based and reference-free transcriptome analysis approaches at the gene expression level. PMID:34674628
Steroid Receptors in Breast Cancer: Understanding of Molecular Function as a Basis for Effective Therapy Development. PMID:34638264
A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC. PMID:34613979
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Mining Natural Products with Anticancer Biological Activity through a Systems Biology Approach. PMID:34422220
Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changes. PMID:34419158
NetControl4BioMed: A web-based platform for controllability analysis of protein-protein interaction networks. PMID:34352070
Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem. PMID:34322655
CFTR Lifecycle Map-A Systems Medicine Model of CFTR Maturation to Predict Possible Active Compound Combinations. PMID:34299207
DysPIA: A Novel Dysregulated Pathway Identification Analysis Method. PMID:34290733
Matrisome, innervation and oxidative metabolism affected in older compared with younger males with similar physical activity. PMID:34219410
A Literature-Derived Knowledge Graph Augments the Interpretation of Single Cell RNA-seq Datasets. PMID:34200671
Criteria-based curation of a therapy-focused compendium to support treatment recommendations in precision oncology. PMID:34162978
Transcriptomic Signature Differences Between SARS-CoV-2 and Influenza Virus Infected Patients. PMID:34135895
Screening of Biological Target Molecules Related to Glucocorticoid-Induced Cataract (GIC) on the Basis of Constructing ceRNA Network. PMID:34076796
Methylation and Expression of FTO and PLAG1 Genes in Childhood Obesity: Insight into Anthropometric Parameters and Glucose-Lipid Metabolism. PMID:34063412
KEA3: improved kinase enrichment analysis via data integration. PMID:34019655
CNVxplorer: a web tool to assist clinical interpretation of CNVs in rare disease patients. PMID:34019647
Host pharmacogenetic factors that may affect liver neoplasm incidence upon using direct-acting antivirals for treating hepatitis C infection. PMID:34013078
Signature RNAS and related regulatory roles in type 1 diabetes mellitus based on competing endogenous RNA regulatory network analysis. PMID:34006268
Comprehensive Analysis of Cyclin Family Gene Expression in Colon Cancer. PMID:33996604
Updates to HCOP: the HGNC comparison of orthology predictions tool. PMID:33959747
IBDDB: a manually curated and text-mining-enhanced database of genes involved in inflammatory bowel disease. PMID:33929018
On the Unfounded Enthusiasm for Soft Selective Sweeps III: The Supervised Machine Learning Algorithm That Isn't. PMID:33916341
Investigating Molecular Determinants of Cancer Cell Resistance to Ionizing Radiation Through an Integrative Bioinformatics Approach. PMID:33898418
Elucidating molecular mechanisms of acquired resistance to BRAF inhibitors in melanoma using a microfluidic device and deep sequencing. PMID:33840166
MODOMICS: An Operational Guide to the Use of the RNA Modification Pathways Database. PMID:33835459
Ten Years of Collaborative Progress in the Quest for Orthologs. PMID:33822172
Diversity of Receptor Expression in Central and Peripheral Mouse Neurons Estimated from Single Cell RNA Sequencing. PMID:33774127
Regulation of hippocampal excitatory synapses by the Zdhhc5 palmitoyl acyltransferase. PMID:33758079
Identification of disease treatment mechanisms through the multiscale interactome. PMID:33741907
FAM83A and FAM83A-AS1 both play oncogenic roles in lung adenocarcinoma. PMID:33732373
Temporal mechanisms of myogenic specification in human induced pluripotent stem cells. PMID:33731358
The immunohistochemical profile of basal cell nevus syndrome-associated and sporadic odontogenic keratocysts: a systematic review and meta-analysis. PMID:33730212
A ligand-receptor interactome platform for discovery of pain mechanisms and therapeutic targets. PMID:33727337
Deciphering the genetic alterations in matrix metallo-proteinase gene family and its putative association with head and neck squamous cell carcinoma. PMID:33681393
Persistent COUP-TFII expression underlies the myopathy and impaired muscle regeneration observed in resistance to thyroid hormone-alpha. PMID:33633251
BioDWH2: an automated graph-based data warehouse and mapping tool. PMID:33618440
Detecting Causal Variants in Mendelian Disorders Using Whole-Genome Sequencing. PMID:33606250
Pharmacology of T2R Mediated Host-Microbe Interactions. PMID:33580389
Mucociliary Respiratory Epithelium Integrity in Molecular Defense and Susceptibility to Pulmonary Viral Infections. PMID:33572760
AlzGPS: a genome-wide positioning systems platform to catalyze multi-omics for Alzheimer's drug discovery. PMID:33441136
Opinion: Standardizing gene product nomenclature-a call to action. PMID:33408252
DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics. PMID:33382035
Guanine Nucleotide-Binding Protein-Like 1 (GNL1) binds RNA G-quadruplex structures in genes associated with Parkinson's disease. PMID:33305682
Common Factors in Neurodegeneration: A Meta-Study Revealing Shared Patterns on a Multi-Omics Scale. PMID:33302607
Diversification of molecularly defined myenteric neuron classes revealed by single-cell RNA sequencing. PMID:33288908
In silico identification of Drosophila melanogaster genes encoding RNA polymerase subunits. PMID:33274328
Mining potentially actionable kinase gene fusions in cancer cell lines with the KuNG FU database. PMID:33257674
Chemocentric Informatics Analysis: Dexamethasone Versus Combination Therapy for COVID-19. PMID:33251412
Immune-related gene data-based molecular subtyping related to the prognosis of breast cancer patients. PMID:33245478
DNA methylation and body mass index from birth to adolescence: meta-analyses of epigenome-wide association studies. PMID:33239103
The UCSC Genome Browser database: 2021 update. PMID:33221922
Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. PMID:33219685
FlyBase: updates to the Drosophila melanogaster knowledge base. PMID:33219682
Insertions of codons encoding basic amino acids in H7 hemagglutinins of influenza A viruses occur by recombination with RNA at hotspots near snoRNA binding sites. PMID:33188057
Identification of biomarkers and pathways in hypertensive nephropathy based on the ceRNA regulatory network. PMID:33176720
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more. PMID:33174605
Genenames.org: the HGNC and VGNC resources in 2021. PMID:33152070
Blackout in the powerhouse: clinical phenotypes associated with defects in the assembly of OXPHOS complexes and the mitoribosome. PMID:33151299
KinaseMD: kinase mutations and drug response database. PMID:33137204
An in-silico method leads to recognition of hub genes and crucial pathways in survival of patients with breast cancer. PMID:33128008
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848
TPR is required for the efficient nuclear export of mRNAs and lncRNAs from short and intron-poor genes. PMID:33091126
KLIFS: an overhaul after the first 5 years of supporting kinase research. PMID:33084889
tRFtarget: a database for transfer RNA-derived fragment targets. PMID:33035346
Comprehensive Analysis of Differential Immunocyte Infiltration and Potential ceRNA Networks Involved in the Development of Atrial Fibrillation. PMID:33015181
COVID-19 Patients Upregulate Toll-like Receptor 4-mediated Inflammatory Signaling That Mimics Bacterial Sepsis. PMID:32989935
Molecular subtyping of glioblastoma based on immune-related genes for prognosis. PMID:32968155
Determining the Molecular Background of Endometrial Receptivity in Adenomyosis. PMID:32933042
Leucocyte-Rich Platelet-Rich Plasma Enhances Fibroblast and Extracellular Matrix Activity: Implications in Wound Healing. PMID:32900003
A mega-analysis of expression quantitative trait loci in retinal tissue. PMID:32870927
Expression profiling of WD40 family genes including DDB1- and CUL4- associated factor (DCAF) genes in mice and human suggests important regulatory roles in testicular development and spermatogenesis. PMID:32867693
miRNA-based biomarkers, therapies, and resistance in Cancer. PMID:32792861
The methylation status of the chemerin promoter region located from - 252 to + 258 bp regulates constitutive but not acute-phase cytokine-inducible chemerin expression levels. PMID:32792625
Dissecting diagnostic heterogeneity in depression by integrating neuroimaging and genetics. PMID:32781460
Guidelines for human gene nomenclature. PMID:32747822
Overview of PAX gene family: analysis of human tissue-specific variant expression and involvement in human disease. PMID:32728807
Copy Number Loss of 17q22 Is Associated with Enzalutamide Resistance and Poor Prognosis in Metastatic Castration-Resistant Prostate Cancer. PMID:32727885
Chemically Induced Hypoxia Enhances miRNA Functions in Breast Cancer. PMID:32707933
Association study based on topological constraints of protein-protein interaction networks. PMID:32612246
Genome-wide investigation of gene-cancer associations for the prediction of novel therapeutic targets in oncology. PMID:32612205
Genetic relationship between Hashimoto`s thyroiditis and papillary thyroid carcinoma with coexisting Hashimoto`s thyroiditis. PMID:32603365
Host-Pathogen Responses to Pandemic Influenza H1N1pdm09 in a Human Respiratory Airway Model. PMID:32599823
Automated generation of gene summaries at the Alliance of Genome Resources. PMID:32559296
What's in a name? Issues to consider when naming Mendelian disorders. PMID:32555417
Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome. PMID:32537769
PINOT: an intuitive resource for integrating protein-protein interactions. PMID:32527260
Molecular signature of eutopic endometrium in endometriosis based on the multi-omics integrative synthesis. PMID:32474803
Progress, Challenges, and Surprises in Annotating the Human Genome. PMID:32421357
MyoMiner: explore gene co-expression in normal and pathological muscle. PMID:32393257
Testis-specific serine kinase protein family in male fertility and as targets for non-hormonal male contraception†. PMID:32337545
Ribosome heterogeneity in stem cells and development. PMID:32330234
Transcriptome Analyses of lncRNAs in A2E-Stressed Retinal Epithelial Cells Unveil Advanced Links between Metabolic Impairments Related to Oxidative Stress and Retinitis Pigmentosa. PMID:32326576
Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. PMID:32313939
MaveQuest: a web resource for planning experimental tests of human variant effects. PMID:32251504
Formation of human long intergenic non-coding RNA genes, pseudogenes, and protein genes: Ancestral sequences are key players. PMID:32214344
PHARMIP: An insilico method to predict genetics that underpin adverse drug reactions. PMID:32123669
Comprehensive analysis of differential immunocyte infiltration and the potential ceRNA networks during epicardial adipose tissue development in congenital heart disease. PMID:32122382
A guide to naming human non-coding RNA genes. PMID:32090359
COA6 Facilitates Cytochrome c Oxidase Biogenesis as Thiol-reductase for Copper Metallochaperones in Mitochondria. PMID:32061935
Identification of Prognostic Dosage-Sensitive Genes in Colorectal Cancer Based on Multi-Omics. PMID:31998369
Incremental data integration for tracking genotype-disease associations. PMID:31986132
Biobtree: A tool to search, map and visualize bioinformatics identifiers and special keywords. PMID:31984130
Compartment and hub definitions tune metabolic networks for metabolomic interpretations. PMID:31972021
The DNA polymerases of Drosophila melanogaster. PMID:31933406
Comprehensive transcriptome analysis of cochlear spiral ganglion neurons at multiple ages. PMID:31913118
Recommendations for application of the functional evidence PS3/BS3 criterion using the ACMG/AMP sequence variant interpretation framework. PMID:31892348
A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains. PMID:31875044
Prognostic significance and molecular mechanisms of adenosine triphosphate-binding cassette subfamily C members in gastric cancer. PMID:31852133
The Melanin-Concentrating Hormone (MCH) System: A Tale of Two Peptides. PMID:31849590
A Bioinformatic Approach for the Identification of Molecular Determinants of Resistance/Sensitivity to Cancer Thermotherapy. PMID:31814876
Inhibition of the Dead Box RNA Helicase 3 Prevents HIV-1 Tat and Cocaine-Induced Neurotoxicity by Targeting Microglia Activation. PMID:31802418
DAISY: A Data Information System for accountability under the General Data Protection Regulation. PMID:31800037
A Genetic Screen for Genes That Impact Peroxisomes in Drosophila Identifies Candidate Genes for Human Disease. PMID:31767637
RPGeNet v2.0: expanding the universe of retinal disease gene interactions network. PMID:31712826
EPD in 2020: enhanced data visualization and extension to ncRNA promoters. PMID:31680159
ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments. PMID:31665499
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data. PMID:31647099
Fasciola hepatica Infection in Cattle: Analyzing Responses of Peripheral Blood Mononuclear Cells (PBMC) Using a Transcriptomics Approach. PMID:31555289
Reconstruction and Analysis of Gene Networks of Human Neurotransmitter Systems Reveal Genes with Contentious Manifestation for Anxiety, Depression, and Intellectual Disabilities. PMID:31514272
Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms. PMID:31353404
VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations. PMID:31192369
ChEA3: transcription factor enrichment analysis by orthogonal omics integration. PMID:31114921
Ten quick tips for biocuration. PMID:31048830
Mapping the transcriptional diversity of genetically and anatomically defined cell populations in the mouse brain. PMID:30977723
The European Bioinformatics Institute in 2018: tools, infrastructure and training. PMID:30445657
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gene name
metasource: Fairsharing.org
version: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
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gene name
metasource: Fairsharing.orgversion: FAIRsharing.org: VGNC; Vertebrate Gene Nomenclature Committee; DOI: https://doi.org/10.25504/FAIRsharing.eBP3tb; Last edited: May 4, 2020, 11:08 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
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