R3XW4N last accessed: 2022-11-04

intenz
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.554297

Other names: IntEnz, Integrated Relational Enzyme database, intenz

IntEnz is a freely available resource focused on enzyme nomenclature. IntEnz contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB) on the nomenclature and classification of enzyme-catalysed reactions.

Webpage:

http://www.ebi.ac.uk/intenz

Licence:

Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
URL: http://opendatacommons.org/licenses/pddl/1.0/

Publications:

Publications
More detailed information about this field from each metasource.

IntEnz, the integrated relational enzyme database
PMID: 14681451
metasource: Fairsharing.org
version: FAIRsharing.org: IntEnz; Integrated relational Enzyme database; DOI: https://doi.org/10.25504/FAIRsharing.q1fdkc; Last edited: March 9, 2021, 4:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

http://dx.doi.org/10.1093/nar/gkh119
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.554297

IntEnz, the integrated relational enzyme database PubMed citations: 75.

75 articles citing: IntEnz, the integrated relational enzyme database

Worldwide Protein Data Bank (wwPDB): A virtual treasure for research in biotechnology. PMID:34908533
Rhea, the reaction knowledgebase in 2022. PMID:34755880
Logistic matrix factorisation and generative adversarial neural network-based method for predicting drug-target interactions. PMID:34297278
Therapeutic Targeting of Nemo-like Kinase in Primary and Acquired Endocrine-resistant Breast Cancer. PMID:33542078
Identification of 37 Heterogeneous Drug Candidates for Treatment of COVID-19 via a Rational Transcriptomics-Based Drug Repurposing Approach. PMID:33504008
A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function. PMID:32449511
Diversity, structure, and synteny of the cutinase gene of Colletotrichum species. PMID:32076525
In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR. PMID:31244651
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins. PMID:30445541
Updates in Rhea: SPARQLing biochemical reaction data. PMID:30272209
DES-Mutation: System for Exploring Links of Mutations and Diseases. PMID:30190574
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. PMID:29126160
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. PMID:29106569
SABIO-RK: an updated resource for manually curated biochemical reaction kinetics. PMID:29092055
DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species. PMID:28729549
Model-based biotechnological potential analysis of Kluyveromyces marxianus central metabolism. PMID:28444480
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604
Genome-Scale Reconstruction of the Human Astrocyte Metabolic Network. PMID:28243200
ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains. PMID:28193156
An update on the Enzyme Portal: an integrative approach for exploring enzyme knowledge. PMID:28158609
Membrane Proteomic Insights into the Physiology and Taxonomy of an Oleaginous Green Microalga. PMID:27837088
Evaluating Functional Annotations of Enzymes Using the Gene Ontology. PMID:27812939
Updates in Rhea - an expert curated resource of biochemical reactions. PMID:27789701
PCDDB: new developments at the Protein Circular Dichroism Data Bank. PMID:27613420
Topology based identification and comprehensive classification of four-transmembrane helix containing proteins (4TMs) in the human genome. PMID:27030248
FunTree: advances in a resource for exploring and contextualising protein function evolution. PMID:26590404
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB. PMID:26476444
Identification of B6T173 (ZmPrx35) as the prevailing peroxidase in highly insect-resistant maize (Zea mays, p84C3) kernels by activity-directed purification. PMID:26379694
PINGU: PredIction of eNzyme catalytic residues usinG seqUence information. PMID:26261982
The SwissLipids knowledgebase for lipid biology. PMID:25943471
New mode of energy metabolism in the seventh order of methanogens as revealed by comparative genome analysis of “Candidatus methanoplasma termitum”. PMID:25501486
Updates in Rhea--a manually curated resource of biochemical reactions. PMID:25332395
EzCatDB: the enzyme reaction database, 2015 update. PMID:25324316
The complex portal--an encyclopaedia of macromolecular complexes. PMID:25313161
Profiling the orphan enzymes. PMID:24906382
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. PMID:24723265
Comparative genomic and transcriptomic analysis of wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen. PMID:24496724
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes. PMID:24319146
PDBe: Protein Data Bank in Europe. PMID:24288376
Evaluation and cross-comparison of lexical entities of biological interest (LexEBI). PMID:24124474
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology. PMID:23895341
A daily-updated tree of (sequenced) life as a reference for genome research. PMID:23778980
Catalytic site identification--a web server to identify catalytic site structural matches throughout PDB. PMID:23680785
The role of structural bioinformatics resources in the era of integrative structural biology. PMID:23633580
The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics. PMID:23514033
FastAnnotator--an efficient transcript annotation web tool. PMID:23281853
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. PMID:23203881
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource. PMID:23203869
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. PMID:23161684
Enzyme informatics. PMID:23116471
MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases. PMID:22233419
Rhea--a manually curated resource of biochemical reactions. PMID:22135291
MACiE: exploring the diversity of biochemical reactions. PMID:22058127
Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis. PMID:21605342
The Protein Data Bank in Europe (PDBe): bringing structure to biology. PMID:21460450
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. PMID:20587024
Quantitative assessment of the expanding complementarity between public and commercial databases of bioactive compounds. PMID:20298516
Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API. PMID:19907644
The IntAct molecular interaction database in 2010. PMID:19850723
The University of Minnesota Biocatalysis/Biodegradation Database: improving public access. PMID:19767608
EnzyMiner: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts. PMID:19758466
Public databases and software for the pathway analysis of cancer genomes. PMID:19455256
Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes. PMID:19284550
PeroxiBase: a database with new tools for peroxidase family classification. PMID:18948296
The annotation of both human and mouse kinomes in UniProtKB/Swiss-Prot: one small step in manual annotation, one giant leap for full comprehension of genomes. PMID:18436524
ChEBI: a database and ontology for chemical entities of biological interest. PMID:17932057
ExplorEnz: a MySQL database of the IUBMB enzyme nomenclature. PMID:17662133
Formal TCA cycle description based on elementary actions. PMID:17426387
Topology of Type II REases revisited; structural classes and the common conserved core. PMID:17369272
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. PMID:17082206
ORENZA: a web resource for studying ORphan ENZyme activities. PMID:17026747
The European Bioinformatics Institute's data resources: towards systems biology. PMID:15608238
The EMBL Nucleotide Sequence Database. PMID:15608199
E-MSD: an integrated data resource for bioinformatics. PMID:15608192
PRECISE: a Database of Predicted and Consensus Interaction Sites in Enzymes. PMID:15608178
http://dx.doi.org/10.1093/nar/gkh119

Tags:

Tags
More detailed information about this field from each metasource.

classification
metasource: Fairsharing.org
version: FAIRsharing.org: IntEnz; Integrated relational Enzyme database; DOI: https://doi.org/10.25504/FAIRsharing.q1fdkc; Last edited: March 9, 2021, 4:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

enzymatic reaction
metasource: Fairsharing.org
version: FAIRsharing.org: IntEnz; Integrated relational Enzyme database; DOI: https://doi.org/10.25504/FAIRsharing.q1fdkc; Last edited: March 9, 2021, 4:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

enzyme
metasource: Fairsharing.org
version: FAIRsharing.org: IntEnz; Integrated relational Enzyme database; DOI: https://doi.org/10.25504/FAIRsharing.q1fdkc; Last edited: March 9, 2021, 4:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

enzyme commission number
metasource: Fairsharing.org
version: FAIRsharing.org: IntEnz; Integrated relational Enzyme database; DOI: https://doi.org/10.25504/FAIRsharing.q1fdkc; Last edited: March 9, 2021, 4:03 p.m.; Last accessed: Jan 03 2022 7:08 p.m.

metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

enzymes and enzyme nomenclature
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

biochemistry
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

bioinformatics
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

enzymes
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.554297

hydrolases
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

isomerases
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

ligases
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

lyases
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

molecular biology
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

oxidoreductases
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

test anxiety
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

transferases
metasource: re3data.org
version: re3data.org: Integrated Relational Enzyme database; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3XW4N last accessed: 2022-11-04

classification enzymatic reaction enzyme enzyme commission number metabolic and signaling pathways enzymes and enzyme nomenclature biochemistry bioinformatics enzyme hydrolases isomerases ligases lyases molecular biology oxidoreductases test anxiety transferases

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Enzyme nomenclature database

Enzyme Nomenclature

ExplorEnz

ORENZA

IUBMB Nomenclature database

BRENDA

TECRdb

Enzyme Commission Number

Enzyme Portal

PROCOGNATE

IUPAC Nomenclature database

Rhea

CSA - Catalytic Site Atlas

FunTree: A Resource For Exploring The Functional Evolution Of Structurally Defined Enzyme Superfamilies

EzCatDB

Chemical Entities of Biological Interest

MultiTaskDB

MACiE

Vertebrate Gene Nomenclature Committee

Enzyme Mechanism Ontology