R3119V last accessed: 2022-11-04

glytoucan
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:54.069740

Other names: GTC, International Glycan Repository, glytoucan

The international glycan structure repository for glycans published in the literature. Any glycan structure, ranging in resolution from monosaccharide composition to fully defined structures can be registered and have an accession number assigned as long as there are no inconsistencies in the structure.

Webpage:

https://glytoucan.org

Licence:

Name: Creative Commons Attribution 4.0 International (CC BY 4.0)
URL: https://creativecommons.org/licenses/by/4.0/

Publications:

Publications
More detailed information about this field from each metasource.

GlyTouCan: an accessible glycan structure repository
PMID: 28922742
metasource: Fairsharing.org
version: FAIRsharing.org: GTC; GlyTouCan; DOI: https://doi.org/10.25504/FAIRsharing.5Pze7l; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:05 p.m.

GlyTouCan 1.0--The international glycan structure repository
PMID: 26476458
metasource: Fairsharing.org
version: FAIRsharing.org: GTC; GlyTouCan; DOI: https://doi.org/10.25504/FAIRsharing.5Pze7l; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:05 p.m.

The international glycan repository GlyTouCan version 3.0
PMID: 33125071
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:54.069740

https://doi.org/10.1093/nar/gkaa947
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

GlyTouCan: an accessible glycan structure repository PubMed citations: 52.

52 articles citing: GlyTouCan: an accessible glycan structure repository

Glyco-Decipher enables glycan database-independent peptide matching and in-depth characterization of site-specific N-glycosylation. PMID:35393418
2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem. PMID:35171663
RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens. PMID:34739839
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. PMID:34676613
Informatics Ecosystems to Advance the Biology of Glycans. PMID:34626414
O-Glycologue: A Formal-Language-Based Generator of O-Glycosylation Networks. PMID:34611872
An Interactive View of Glycosylation. PMID:34611864
Recent advances in mass spectrometry analysis of neuropeptides. PMID:34558119
Applications and continued evolution of glycan imaging mass spectrometry. PMID:34392557
Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen. PMID:34314492
Modernized uniform representation of carbohydrate molecules in the Protein Data Bank. PMID:33978738
A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry-Based Glycoproteomics. PMID:33583771
O-GlcNAcAtlas: A database of experimentally identified O-GlcNAc sites and proteins. PMID:33442735
Molecular representations in AI-driven drug discovery: a review and practical guide. PMID:33431035
Glycomics-informed glycoproteomic analysis of site-specific glycosylation for SARS-CoV-2 spike protein. PMID:33377107
Evolutionary conservation of human ketodeoxynonulosonic acid production is independent of sialoglycan biosynthesis. PMID:33373330
Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication. PMID:33349503
GAG-DB, the New Interface of the Three-Dimensional Landscape of Glycosaminoglycans. PMID:33322545
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy. PMID:33302373
The international glycan repository GlyTouCan version 3.0. PMID:33125071
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer. PMID:33093930
Computational tools for drawing, building and displaying carbohydrates: a visual guide. PMID:33082879
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor. PMID:32841605
Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor. PMID:32743578
Examining and Fine-tuning the Selection of Glycan Compositions with GlyConnect Compozitor. PMID:32636234
Promiscuity and specificity of eukaryotic glycosyltransferases. PMID:32539082
Serum Protein N-Glycans in Colostrum and Mature Milk of Chinese Mothers. PMID:32496058
GlyGen data model and processing workflow. PMID:32324859
GlyMDB: Glycan Microarray Database and analysis toolset. PMID:31841142
A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts. PMID:31833756
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery. PMID:31735951
ProCarbDB: a database of carbohydrate-binding proteins. PMID:31598690
The GlySpace Alliance: toward a collaborative global glycoinformatics community. PMID:31573039
Primary Human Natural Killer Cells Retain Proinflammatory IgG1 at the Cell Surface and Express CD16a Glycoforms with Donor-dependent Variability. PMID:31467031
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Revisiting the Language of Glycoscience: Readers, Writers and Erasers in Carbohydrate Biochemistry. PMID:31317590
glypy: An Open Source Glycoinformatics Library. PMID:31310539
Updates to the Symbol Nomenclature for Glycans guidelines. PMID:31184695
Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping. PMID:31065629
A Bioinformatics View of Glycan⁻Virus Interactions. PMID:31018588
SugarSketcher: Quick and Intuitive Online Glycan Drawing. PMID:30563078
Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns. PMID:30405127
MatrixDB: integration of new data with a focus on glycosaminoglycan interactions. PMID:30371822
Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update). PMID:30357361
The jPOST environment: an integrated proteomics data repository and database. PMID:30295851
UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. PMID:30239928
Glycomics@ExPASy: Bridging the Gap. PMID:30097532
Meeting Report of the International Life Science Integration Workshop 2018. PMID:29982395
Application of network smoothing to glycan LC-MS profiling. PMID:29790907
Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award. PMID:29644549
GlyTouCan 1.0--The international glycan structure repository PubMed citations: 41.

41 articles citing: GlyTouCan 1.0--The international glycan structure repository

Commercial Low Molecular Weight Heparins - Patent Ecosystem and Technology Paradigm for Quality Characterization. PMID:35915630
RDFizing the biosynthetic pathway of E.coli O-antigen to enable semantic sharing of microbiology data. PMID:34809564
The glycosylation in SARS-CoV-2 and its receptor ACE2. PMID:34782609
Bioinformatics in Immunoglobulin Glycosylation Analysis. PMID:34687011
Informatics Ecosystems to Advance the Biology of Glycans. PMID:34626414
Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins. PMID:34611862
Glycosylation and Cardiovascular Diseases. PMID:34495542
Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis. PMID:34404781
Putting the pieces together: mapping the O-glycoproteome. PMID:34358979
FGDB: Database of follicle stimulating hormone glycans. PMID:33897975
Importance of evaluating protein glycosylation in pluripotent stem cell-derived cardiomyocytes for research and clinical applications. PMID:33830329
Glycomics-informed glycoproteomic analysis of site-specific glycosylation for SARS-CoV-2 spike protein. PMID:33377107
A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR). PMID:33178355
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer. PMID:33093930
Developments in Mass Spectrometry for Glycosaminoglycan Analysis: A Review. PMID:32938749
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
How and why plants and human N-glycans are different: Insight from molecular dynamics into the "glycoblocks" architecture of complex carbohydrates. PMID:32874351
Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor. PMID:32841605
Neural glycomics: the sweet side of nervous system functions. PMID:32613283
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts. PMID:31833756
glypy: An Open Source Glycoinformatics Library. PMID:31310539
GlycanFormatConverter: a conversion tool for translating the complexities of glycans. PMID:30535258
The Immune Epitope Database (IEDB): 2018 update. PMID:30357391
GlycanAnalyzer: software for automated interpretation of N-glycan profiles after exoglycosidase digestions. PMID:30101321
A novel broad specificity fucosidase capable of core α1-6 fucose release from N-glycans labeled with urea-linked fluorescent dyes. PMID:29934601
Application of network smoothing to glycan LC-MS profiling. PMID:29790907
The Glycoscience of Immunity. PMID:29759949
Emerging glycobiology tools: A renaissance in accessibility. PMID:29759530
Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses. PMID:29553244
Finite Dimension: A Mathematical Tool to Analise Glycans. PMID:29535393
Annotation of Peptide Structures Using SMILES and Other Chemical Codes-Practical Solutions. PMID:29186902
Mining High-Complexity Motifs in Glycans: A New Language To Uncover the Fine Specificities of Lectins and Glycosidases. PMID:29058413
Recent Advances in the Mass Spectrometry Methods for Glycomics and Cancer. PMID:29049885
GLYDE-II: The GLYcan data exchange format. PMID:28955652
GlyTouCan: an accessible glycan structure repository. PMID:28922742
Glycosaminoglycanomics: where we are. PMID:27900575
Computational approaches to define a human milk metaglycome. PMID:26803164
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. PMID:26740669
Mass Spectrometry-Based N-Glycomics of Colorectal Cancer. PMID:26690136
The international glycan repository GlyTouCan version 3.0 PubMed citations: 12.

12 articles citing: The international glycan repository GlyTouCan version 3.0

In silico analysis of the human milk oligosaccharide glycome reveals key enzymes of their biosynthesis. PMID:35760821
GlyNet: a multi-task neural network for predicting protein-glycan interactions. PMID:35756507
Functions of Glycosylation and Related Web Resources for Its Prediction. PMID:35696078
Circulating Glycan Monosaccharide Composite-Based Biomarker Diagnoses Colorectal Cancer at Early Stages and Predicts Prognosis. PMID:35574422
CarboGrove: a resource of glycan-binding specificities through analyzed glycan-array datasets from all platforms. PMID:35352123
CarbArrayART: a new software tool for carbohydrate microarray data storage, processing, presentation, and reporting. PMID:35352122
Dealing with the Ambiguity of Glycan Substructure Search. PMID:35011294
SugarDrawer: A Web-Based Database Search Tool with Editing Glycan Structures. PMID:34885724
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. PMID:34676613
The Role of Fucose-Containing Glycan Motifs Across Taxonomic Kingdoms. PMID:34631801
The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application. PMID:33677548
The 2021 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:33396976
https://doi.org/10.1093/nar/gkaa947

Tags:

Tags
More detailed information about this field from each metasource.

molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: GTC; GlyTouCan; DOI: https://doi.org/10.25504/FAIRsharing.5Pze7l; Last edited: March 21, 2019, 3:53 p.m.; Last accessed: Jan 03 2022 7:05 p.m.

structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

carbohydrates
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

aglycons
metasource: re3data.org
version: re3data.org: GlyTouCan; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3119V last accessed: 2022-11-04

carbohydrate
metasource: re3data.org
version: re3data.org: GlyTouCan; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3119V last accessed: 2022-11-04

glycan
metasource: re3data.org
version: re3data.org: GlyTouCan; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3119V last accessed: 2022-11-04

glycobiology
metasource: re3data.org
version: re3data.org: GlyTouCan; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3119V last accessed: 2022-11-04

glycoconjugates
metasource: re3data.org
version: re3data.org: GlyTouCan; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3119V last accessed: 2022-11-04

glycomics
metasource: re3data.org
version: re3data.org: GlyTouCan; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3119V last accessed: 2022-11-04

monosaccharide
metasource: re3data.org
version: re3data.org: GlyTouCan; editing status 2021-11-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3119V last accessed: 2022-11-04

sequence sites, features and motifs
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:54.069740

literature and language
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:54.069740

mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:54.069740

protein structural motifs and surfaces
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:54.069740

molecular structure structure carbohydrates aglycons carbohydrate glycan glycobiology glycoconjugates glycomics monosaccharide sequence sites, features and motifs literature and language mapping protein structural motifs and surfaces

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Glycan

UniCarbKB

Minimum Information Required for A Glycomics Experiment - Guidelines for Reporting NMR Data on Glycan Structures

Glycan Naming Ontology

Glycan Fragment DB

Glycomics Ontology

Minimum Information Required for A Glycomics Experiment - Guidelines for Reporting NMR Data on Binding of Glycans to Receptors

Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis

GlycomeDB

Molecular Modeling Database

Carbohydrate Structure Database

Glydin

FlyGlycoDB

Glycoconjugate Data Bank

Minimum Information Required for A Glycomics Experiment - Mass Spectrometric Analysis

Monosaccharide Database

GlycoRDF

Jenalib: Jena Library of Biological Macromolecules

Bacterial CSDB (BCSDB)

RNA Characterization of Secondary Structure Motifs