TiProD

PRODORIC2

TrSDB

Transcription factor database

Factorbook

Human transcription factor binding data from ChIP-seq

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

SCPD - Saccharomyces cerevisiae promoter database

A database of yeast promoters

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

TTSMI

Triplex Target DNA Sites in the human genome

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

PlantProm

Plant promoter sequences

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

TRANSFAC®

The TRANSFAC® database has been constructed to model the interaction of eukaryotic transcription factors with their DNA-binding sites and how this affects gene expression. At its core are the three ta ...

Annotated regulatory Binding Sites from Orthologous Promoters

ABS: A database of Annotated regulatory Binding Sites from known binding sites identified in promoters of orthologous vertebrate genes.

Databases of Orthologous Promoters

DoOP is a database of eukaryotic promoter sequences (upstream regions), aiming to facilitate the recognition of regulatory sites conserved between species. Based on the Arabidopsis thaliana and Homo s ...

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

S/MARt DB

The nuclear organization of metaphase and interphase cells has been studied over several decades and increasing evidence supports the concept upon which the eukaryotic chromatin is organized in the fo ...

CMGSDB

Computational models for gene silencing in C. elegans