Suggested Ontology for PHARMacogenomics
Names
More detailed information about this field from each metasource.
Suggested Ontology for PHARMacogenomics
metasource: Fairsharing.org
version: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
SOPHARM
metasource: Fairsharing.org
version: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: The new release (March 02, 2017) 2.2 includes concept and properties labels in French.
Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
Suggested Ontology for Pharmacogenomics
metasource: Biontology / Bioportal
version: The new release (March 02, 2017) 2.2 includes concept and properties labels in French.
Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
Names
More detailed information about this field from each metasource.
Suggested Ontology for PHARMacogenomics
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
SOPHARM
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: The new release (March 02, 2017) 2.2 includes concept and properties labels in French. Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
Suggested Ontology for Pharmacogenomics
metasource: Biontology / Bioportalversion: The new release (March 02, 2017) 2.2 includes concept and properties labels in French. Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
Other names: SOPHARM, Suggested Ontology for Pharmacogenomics
Names
More detailed information about this field from each metasource.
Suggested Ontology for PHARMacogenomics
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
SOPHARM
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: The new release (March 02, 2017) 2.2 includes concept and properties labels in French. Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
Suggested Ontology for Pharmacogenomics
metasource: Biontology / Bioportalversion: The new release (March 02, 2017) 2.2 includes concept and properties labels in French. Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
SO-Pharm is a formal ontology that represent domain knowledge in pharmacogenomics. To achieve this goal, SO-Pharm articulates ontologies from sub domains of phamacogenomics (i.e. genotype, phenotype, drug, trial representations). SO-Pharm enables to support knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics.
Description
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SO-Pharm is a formal ontology that represent domain knowledge in pharmacogenomics. To achieve this goal, SO-Pharm articulates ontologies from sub domains of phamacogenomics (i.e. genotype, phenotype, drug, trial representations). SO-Pharm enables to support knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics.
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.
metasource: Biontology / Bioportalversion: The new release (March 02, 2017) 2.2 includes concept and properties labels in French. Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
Webpage:
http://bioportal.bioontology.org/ontologies/SOPHARMWebpage
More detailed information about this field from each metasource.
http://bioportal.bioontology.org/ontologies/SOPHARM
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://members.loria.fr/ACoulet/files/sopharm2.0_description.php
metasource: Biontology / Bioportalversion: The new release (March 02, 2017) 2.2 includes concept and properties labels in French. Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
Publications:
Publications
More detailed information about this field from each metasource.
Ontology-based knowledge discovery in pharmacogenomics
PMID: 21431576
metasource: Fairsharing.org
version: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://hal.inria.fr/inria-00089824/en/
metasource: Biontology / Bioportal
version: The new release (March 02, 2017) 2.2 includes concept and properties labels in French.
Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
Publications
More detailed information about this field from each metasource.
Ontology-based knowledge discovery in pharmacogenomics
PMID: 21431576
metasource: Fairsharing.org
version: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://hal.inria.fr/inria-00089824/en/
metasource: Biontology / Bioportalversion: The new release (March 02, 2017) 2.2 includes concept and properties labels in French. Imports have been abandoned in favor of simple references to distant URI extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SOPHARM
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Ontology-based knowledge discovery in pharmacogenomics
PubMed citations: 3.
3 articles citing: Ontology-based knowledge discovery in pharmacogenomics
Building a Pharmacogenomics Knowledge Model Toward Precision Medicine: Case Study in Melanoma. PMID:33084582
Learning from biomedical linked data to suggest valid pharmacogenes. PMID:28427468
Semantically enabling pharmacogenomic data for the realization of personalized medicine. PMID:22256869 - http://hal.inria.fr/inria-00089824/en/
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chemical entity
metasource: Fairsharing.org
version: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
drug
metasource: Fairsharing.org
version: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genotype
metasource: Fairsharing.org
version: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
chemical entity
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
drug
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
genotype
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: SOPHARM; Suggested Ontology for PHARMacogenomics; DOI: https://doi.org/10.25504/FAIRsharing.nttge3; Last edited: June 4, 2019, 3:23 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
chemical entity drug genotype phenotype
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