Mouse Proteome Project
Other names: mouse_proteome_project
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Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. This molecular compendium, fully accessible via a searchable web-browser interface, serves as a reliable reference of the expressed tissue and organelle proteomes of a leading model mammal.
Description
More detailed information about this field from each metasource.
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. This molecular compendium, fully accessible via a searchable web-browser interface, serves as a reliable reference of the expressed tissue and organelle proteomes of a leading model mammal.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:54.712840
Webpage:
http://tap.med.utoronto.ca/mts/Webpage
More detailed information about this field from each metasource.
http://tap.med.utoronto.ca/mts/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:54.712840
Publications:
Publications
More detailed information about this field from each metasource.
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling
PMID: 16615898
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:54.712840
Publications
More detailed information about this field from each metasource.
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling
PMID: 16615898
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:54.712840
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Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling
PubMed citations: 199.
199 articles citing: Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling
OMICS in Chronic Kidney Disease: Focus on Prognosis and Prediction. PMID:35008760
Subcellular Transcriptomics and Proteomics: A Comparative Methods Review. PMID:34922010
The Hidden Side of NCAM Family: NCAM2, a Key Cytoskeleton Organization Molecule Regulating Multiple Neural Functions. PMID:34576185
Subcellular proteomics. PMID:34549195
Quantitative proteome comparison of human hearts with those of model organisms. PMID:33872299
Maternal Iron Deficiency Modulates Placental Transcriptome and Proteome in Mid-Gestation of Mouse Pregnancy. PMID:33693820
Bioinformatic analysis of membrane and associated proteins in murine cardiomyocytes and human myocardium. PMID:33262348
Sarcolipin Exhibits Abundant RNA Transcription and Minimal Protein Expression in Horse Gluteal Muscle. PMID:33202832
Expression of Paracrine Effectors in Human Adipose-Derived Mesenchymal Stem Cells Treated With Plasma From Brown Bears (Ursus arctos). PMID:32949228
Recent advances in mass spectrometry based clinical proteomics: applications to cancer research. PMID:32489335
Synthetic analogues of 2-oxo acids discriminate metabolic contribution of the 2-oxoglutarate and 2-oxoadipate dehydrogenases in mammalian cells and tissues. PMID:32024885
Epitranscriptomic profiling in human placenta: N6-methyladenosine modification at the 5'-untranslated region is related to fetal growth and preeclampsia. PMID:31914637
Machine Learning Methods for Predicting Human-Adaptive Influenza A Viruses Based on Viral Nucleotide Compositions. PMID:31750915
Haploinsufficiency of ARHGAP42 is associated with hypertension. PMID:30903111
The Proteogenomic Landscape of Curable Prostate Cancer. PMID:30889379
Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics. PMID:30659192
Mitoproteomics: Tackling Mitochondrial Dysfunction in Human Disease. PMID:30533169
Dynamic Proteomic and miRNA Analysis of Polysomes from Isolated Mouse Heart After Langendorff Perfusion. PMID:30222143
Mammary molecular portraits reveal lineage-specific features and progenitor cell vulnerabilities. PMID:29921600
Epigenomes in Cardiovascular Disease. PMID:29798902
Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms Between Mouse Strains. PMID:29481055
Active and dynamic mitochondrial S-depalmitoylation revealed by targeted fluorescent probes. PMID:29362370
Hormone Signaling Regulates Nymphal Diapause in Laodelphax striatellus (Hemiptera: Delphacidae). PMID:29042683
Puzzling Out Synaptic Vesicle 2 Family Members Functions. PMID:28588450
Metabolic control of primed human pluripotent stem cell fate and function by the miR-200c-SIRT2 axis. PMID:28436968
AEE788 Inhibits Basal Body Assembly and Blocks DNA Replication in the African Trypanosome. PMID:28246189
Cell-selective proteomics for biological discovery. PMID:28088696
Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver. PMID:27818260
A Synonymous Mutation Upstream of the Gene Encoding a Weak-Link Enzyme Causes an Ultrasensitive Response in Growth Rate. PMID:27501982
Identification of aldolase A as a potential diagnostic biomarker for colorectal cancer based on proteomic analysis using formalin-fixed paraffin-embedded tissue. PMID:27468721
Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity. PMID:27391817
Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer. PMID:27372738
Resonance Raman Probes for Organelle-Specific Labeling in Live Cells. PMID:27339882
Global Identification and Differential Distribution Analysis of Glycans in Subcellular Fractions of Bladder Cells. PMID:27313494
Clinical implications from proteomic studies in neurodegenerative diseases: lessons from mitochondrial proteins. PMID:26837425
Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics. PMID:26732734
Carboxylesterase converts Amplex red to resorufin: Implications for mitochondrial H2O2 release assays. PMID:26577176
Evolutionarily conserved intercalated disc protein Tmem65 regulates cardiac conduction and connexin 43 function. PMID:26403541
Allele-Selective Transcriptome Recruitment to Polysomes Primed for Translation: Protein-Coding and Noncoding RNAs, and RNA Isoforms. PMID:26331722
Genetic variation in insulin-induced kinase signaling. PMID:26202599
Site-Specific Proteomic Mapping Identifies Selectively Modified Regulatory Cysteine Residues in Functionally Distinct Protein Networks. PMID:26165157
Regulation of brain glutamate metabolism by nitric oxide and S-nitrosylation. PMID:26152695
Activation of the Endogenous Renin-Angiotensin-Aldosterone System or Aldosterone Administration Increases Urinary Exosomal Sodium Channel Excretion. PMID:26113616
Proteomic analysis of colon and rectal carcinoma using standard and customized databases. PMID:26110064
Transcriptomic and proteomic analysis of pre-diapause and non-diapause eggs of migratory locust, Locusta migratoria L. (Orthoptera: Acridoidea). PMID:26091374
Personal genomes, quantitative dynamic omics and personalized medicine. PMID:25798291
Efficient prediction of human protein-protein interactions at a global scale. PMID:25492630
The utility of protein and mRNA correlation. PMID:25467744
Significant distinct branches of hierarchical trees: a framework for statistical analysis and applications to biological data. PMID:25409689
Onco-proteogenomics: cancer proteomics joins forces with genomics. PMID:25357240
Decoding neuroproteomics: integrating the genome, translatome and functional anatomy. PMID:25349915
MitProNet: A knowledgebase and analysis platform of proteome, interactome and diseases for mammalian mitochondria. PMID:25347823
Identification of reference proteins for Western blot analyses in mouse model systems of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) toxicity. PMID:25329058
Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data. PMID:25033389
Multi-tissue computational modeling analyzes pathophysiology of type 2 diabetes in MKR mice. PMID:25029527
Alterations in the cerebellar (Phospho)proteome of a cyclic guanosine monophosphate (cGMP)-dependent protein kinase knockout mouse. PMID:24925903
Maternal obesity affects fetal neurodevelopmental and metabolic gene expression: a pilot study. PMID:24558408
Sel1L is indispensable for mammalian endoplasmic reticulum-associated degradation, endoplasmic reticulum homeostasis, and survival. PMID:24453213
Characterization, design, and function of the mitochondrial proteome: from organs to organisms. PMID:24070373
Large-scale top-down proteomics of the human proteome: membrane proteins, mitochondria, and senescence. PMID:24023390
Integration of cardiac proteome biology and medicine by a specialized knowledgebase. PMID:23965338
Expression proteomics predicts loss of RXR-γ during progression of epithelial ovarian cancer. PMID:23936423
Partial restoration of macrophage alteration from diet-induced obesity in response to Porphyromonas gingivalis infection. PMID:23922979
Frac-seq reveals isoform-specific recruitment to polyribosomes. PMID:23783272
Pilot study identifying myosin heavy chain 7, desmin, insulin-like growth factor 7, and annexin A2 as circulating biomarkers of human heart failure. PMID:23713052
Transcriptomic and proteomic responses of sweetpotato whitefly, Bemisia tabaci, to thiamethoxam. PMID:23671574
Recent advances in quantitative neuroproteomics. PMID:23623823
Integrative omics analysis reveals the importance and scope of translational repression in microRNA-mediated regulation. PMID:23550052
Moving H5N1 studies into the era of systems biology. PMID:23499671
Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse. PMID:23436904
Concise review: new paradigms for Down syndrome research using induced pluripotent stem cells: tackling complex human genetic disease. PMID:23413375
Quantitative analysis of chromatin proteomes in disease. PMID:23299252
The revolution and evolution of shotgun proteomics for large-scale proteome analysis. PMID:23294060
Cell biology of the endoplasmic reticulum and the Golgi apparatus through proteomics. PMID:23284051
Recent advances in cardiovascular proteomics. PMID:23153792
AIF and Scythe (Bat3) regulate phosphatidylserine exposure and macrophage clearance of cells undergoing Fas (APO-1)-mediated apoptosis. PMID:23077592
Adhesion GPCRs are widely expressed throughout the subsections of the gastrointestinal tract. PMID:23009096
Altered gene and protein expression in liver of the obese spontaneously hypertensive/NDmcr-cp rat. PMID:22998770
A simple protocol for the subcellular fractionation of skeletal muscle cells and tissue. PMID:22994964
Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses. PMID:22880955
Viral immune modulators perturb the human molecular network by common and unique strategies. PMID:22810585
An improvement of shotgun proteomics analysis by adding next-generation sequencing transcriptome data in orange. PMID:22768084
In-depth proteomic analysis of nonsmall cell lung cancer to discover molecular targets and candidate biomarkers. PMID:22761400
Novel neurodevelopmental information revealed in amniotic fluid supernatant transcripts from fetuses with trisomies 18 and 21. PMID:22752091
Janus-like opposing roles of CD47 in autoimmune brain inflammation in humans and mice. PMID:22734047
Prioritizing cancer-related key miRNA-target interactions by integrative genomics. PMID:22705797
Evolution and diversification of the organellar release factor family. PMID:22688947
Fe sparing and Fe recycling contribute to increased superoxide dismutase capacity in iron-starved Chlamydomonas reinhardtii. PMID:22685165
Label-free protein quantitation using weighted spectral counting. PMID:22665309
Perspectives on: SGP symposium on mitochondrial physiology and medicine: mitochondrial proteome design: from molecular identity to pathophysiological regulation. PMID:22641634
Proteomic analysis of S-acylated proteins in human B cells reveals palmitoylation of the immune regulators CD20 and CD23. PMID:22615937
PaxDb, a database of protein abundance averages across all three domains of life. PMID:22535208
Analysis of a membrane-enriched proteome from postmortem human brain tissue in Alzheimer's disease. PMID:22532456
Quantitative analysis of the detergent-insoluble brain proteome in frontotemporal lobar degeneration using SILAC internal standards. PMID:22416763
Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells. PMID:22348290
Identification of prostate-enriched proteins by in-depth proteomic analyses of expressed prostatic secretions in urine. PMID:22339264
Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data. PMID:22329341
The amniotic fluid transcriptome: a source of novel information about human fetal development. PMID:22183218
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. PMID:22019781
Genomes, proteomes, and the central dogma. PMID:22010165
Translational analysis of mouse and human placental protein and mRNA reveals distinct molecular pathologies in human preeclampsia. PMID:21986993
A valid mouse model of AGRIN-associated congenital myasthenic syndrome. PMID:21890498
Proteomic analysis of mitochondria in APOE transgenic mice and in response to an ischemic challenge. PMID:21878944
Absolute quantification of microbial proteomes at different states by directed mass spectrometry. PMID:21772258
Network clustering revealed the systemic alterations of mitochondrial protein expression. PMID:21738461
Integrative computational biology for cancer research. PMID:21691773
Protein localization as a principal feature of the etiology and comorbidity of genetic diseases. PMID:21613983
Proteomics and mass spectrometry: what have we learned about the heart? PMID:21532779
The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon. PMID:21531334
Identification of novel ryanodine receptor 1 (RyR1) protein interaction with calcium homeostasis endoplasmic reticulum protein (CHERP). PMID:21454501
Modulation of gene expression in heart and liver of hibernating black bears (Ursus americanus). PMID:21453527
A bioinformatics workflow for variant peptide detection in shotgun proteomics. PMID:21389108
Initial characterization of the human central proteome. PMID:21269460
Identification and characterization of new long chain acyl-CoA dehydrogenases. PMID:21237683
Computational models reduce complexity and accelerate insight into cardiac signaling networks. PMID:21212391
A tissue-specific atlas of mouse protein phosphorylation and expression. PMID:21183079
RNA sequencing shows no dosage compensation of the active X-chromosome. PMID:21102464
Generating and navigating proteome maps using mass spectrometry. PMID:20944666
Proteomics of industrial fungi: trends and insights for biotechnology. PMID:20922379
Phosphoproteomic analysis reveals site-specific changes in GFAP and NDRG2 phosphorylation in frontotemporal lobar degeneration. PMID:20886841
Investigating the validity of current network analysis on static conglomerate networks by protein network stratification. PMID:20846443
Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy. PMID:20807835
Galectin-3 is a candidate biomarker for amyotrophic lateral sclerosis: discovery by a proteomics approach. PMID:20698585
The mitochondrial proteome and human disease. PMID:20690818
Overcoming key technological challenges in using mass spectrometry for mapping cell surfaces in tissues. PMID:20548103
Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria. PMID:20495213
Shotgun proteomics of Aspergillus niger microsomes upon D-xylose induction. PMID:20453123
Integrated hepatic transcriptome and proteome analysis of mice with high-fat diet-induced nonalcoholic fatty liver disease. PMID:20303728
Review of peak detection algorithms in liquid-chromatography-mass spectrometry. PMID:20190954
Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps. PMID:20127684
AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. PMID:20061580
Multiplex SILAC analysis of a cellular TDP-43 proteinopathy model reveals protein inclusions associated with SUMOylation and diverse polyubiquitin chains. PMID:20047951
A global view of protein expression in human cells, tissues, and organs. PMID:20029370
A quantitative proteomics analysis of subcellular proteome localization and changes induced by DNA damage. PMID:20026476
Shotgun proteomics analysis of hibernating arctic ground squirrels. PMID:19955082
Quantitative organellar proteomics analysis of rough endoplasmic reticulum from normal and acute pancreatitis rat pancreas. PMID:19954227
Integrated proteomic analysis of human cancer cells and plasma from tumor bearing mice for ovarian cancer biomarker discovery. PMID:19936259
Expansion of the human mitochondrial proteome by intra- and inter-compartmental protein duplication. PMID:19930686
Quantitative mass spectrometry of diabetic kidney tubules identifies GRAP as a novel regulator of TGF-beta signaling. PMID:19836472
Neuroscience in the era of functional genomics and systems biology. PMID:19829370
Proteomic and phosphoproteomic analyses of the soluble fraction following acute spinal cord contusion in rats. PMID:19691422
Network-assisted protein identification and data interpretation in shotgun proteomics. PMID:19690572
HMGA1 levels influence mitochondrial function and mitochondrial DNA repair efficiency. PMID:19687300
Peptide separations by on-line MudPIT compared to isoelectric focusing in an off-gel format: application to a membrane-enriched fraction from C2C12 mouse skeletal muscle cells. PMID:19670906
Proteomic-based identification of maternal proteins in mature mouse oocytes. PMID:19646285
Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology. PMID:19536202
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. PMID:19372376
Estimating accuracy of RNA-Seq and microarrays with proteomics. PMID:19371429
Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. PMID:19260763
MitoMiner, an integrated database for the storage and analysis of mitochondrial proteomics data. PMID:19208617
The organelle proteome of the DT40 lymphocyte cell line. PMID:19181659
In-depth proteomics to define the cell surface and secretome of ovarian cancer cells and processes of protein shedding. PMID:19155298
Enhancing identifications of lipid-embedded proteins by mass spectrometry for improved mapping of endothelial plasma membranes in vivo. PMID:19155209
Evolution of organelle-associated protein profiling. PMID:19110081
A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes. PMID:19104045
A label free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus. PMID:19038371
Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry. PMID:19036722
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. PMID:18974169
A proteomics approach to membrane trafficking. PMID:18678750
A mitochondrial protein compendium elucidates complex I disease biology. PMID:18614015
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. PMID:18613946
Environmental enrichment during adolescence regulates gene expression in the striatum of mice. PMID:18585688
Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues. PMID:18570455
A mouse to human search for plasma proteome changes associated with pancreatic tumor development. PMID:18547137
An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures. PMID:18511481
PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression. PMID:18489776
BAT3 interacts with transforming growth factor-beta (TGF-beta) receptors and enhances TGF-beta1-induced type I collagen expression in mesangial cells. PMID:18487607
Application of capillary isotachophoresis-based multidimensional separations coupled with electrospray ionization-tandem mass spectrometry for characterization of mouse brain mitochondrial proteome. PMID:18425750
Mammalian long-chain acyl-CoA synthetases. PMID:18375835
The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions. PMID:18361515
Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria. PMID:18348319
Mitochondrial protein targets of thiol-reactive electrophiles. PMID:18324786
Mutation of the Cyba gene encoding p22phox causes vestibular and immune defects in mice. PMID:18292807
OS-9 and GRP94 deliver mutant alpha1-antitrypsin to the Hrd1-SEL1L ubiquitin ligase complex for ERAD. PMID:18264092
Towards defining the nuclear proteome. PMID:18211718
Genes and (common) pathways underlying drug addiction. PMID:18179280
Global analysis of alternative splicing differences between humans and chimpanzees. PMID:17978102
Integration of biological networks and gene expression data using Cytoscape. PMID:17947979
miRGator: an integrated system for functional annotation of microRNAs. PMID:17942429
A gene expression bar code for microarray data. PMID:17906632
The ribosome filter redux. PMID:17890902
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics. PMID:17761002
White spot syndrome virus proteins and differentially expressed host proteins identified in shrimp epithelium by shotgun proteomics and cleavable isotope-coded affinity tag. PMID:17715220
Gene expression of transporters and phase I/II metabolic enzymes in murine small intestine during fasting. PMID:17683626
Complex seizure disorder caused by Brunol4 deficiency in mice. PMID:17677002
Recent advances in neuroproteomics. PMID:17608026
MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data. PMID:17567892
PrestOMIC, an open source application for dissemination of proteomic datasets by individual laboratories. PMID:17553161
Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes. PMID:17486137
Maturation of the mammalian secretome. PMID:17472737
HLA-B-associated transcript 3 (Bat3)/Scythe is essential for p300-mediated acetylation of p53. PMID:17403783
Comparative Bioinformatics Analyses and Profiling of Lysosome-Related Organelle Proteomes. PMID:17375895
Network activity-independent coordinated gene expression program for synapse assembly. PMID:17360580
Network-based prediction of protein function. PMID:17353930
Comparison of protein and mRNA expression evolution in humans and chimpanzees. PMID:17299596
Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe. PMID:17299416
MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. PMID:17269722
Fluorogenic label for biomolecular imaging. PMID:17163679
Organellar proteomics: turning inventories into insights. PMID:16953200
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More detailed information about this field from each metasource.
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:54.712840
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:54.712840
transcriptomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:54.712840
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:54.712840
protein expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:54.712840
Tags
More detailed information about this field from each metasource.
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:54.712840
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:54.712840
transcriptomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:54.712840
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:54.712840
protein expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:54.712840
proteomics model organisms transcriptomics gene transcripts protein expression
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