Mammalian Phenotype Ontology
Names
More detailed information about this field from each metasource.
Mammalian Phenotype Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MP
MP
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MP
Names
More detailed information about this field from each metasource.
Mammalian Phenotype Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MP
MP
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MP
Names
More detailed information about this field from each metasource.
Mammalian Phenotype Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MP
MP
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MP
The observable morphological, physiological, behavioral and other characteristics of mammalian organisms that are manifested through development and lifespan.
Description
More detailed information about this field from each metasource.
The observable morphological, physiological, behavioral and other characteristics of mammalian organisms that are manifested through development and lifespan.
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Standard terms for annotating mammalian phenotypic data.
metasource: Biontology / Bioportalversion: 2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MP
Webpage:
http://www.informatics.jax.org/vocab/mp_ontologyWebpage
More detailed information about this field from each metasource.
http://www.informatics.jax.org/vocab/mp_ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
http://www.informatics.jax.org/searches/MP_form.shtml
metasource: Biontology / Bioportalversion: 2022-10-19 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MP
Licence:
Name: MGI Warranty Disclaimer and Copyright NoticeLicence name
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MGI Warranty Disclaimer and Copyright Notice
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
More detailed information about this field from each metasource.
http://www.informatics.jax.org/mgihome/other/copyright.shtml
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
PMID: 15642099
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The mammalian phenotype ontology: enabling robust annotation and comparative analysis
PMID: 20052305
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
PMID: 22961259
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens
PMID: 25825651
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
PMID: 15642099
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The mammalian phenotype ontology: enabling robust annotation and comparative analysis
PMID: 20052305
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
PMID: 22961259
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens
PMID: 25825651
metasource: Fairsharing.org
version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
PubMed citations: 208.
208 articles citing: The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. PMID:35317743
Application of Whole Exome Sequencing and Functional Annotations to Identify Genetic Variants Associated with Marfan Syndrome. PMID:35207686
FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example. PMID:34823588
Meta-analysis: Congruence of genomic and phenotypic differentiation across diverse natural study systems. PMID:34603492
Allele-specific DNA methylation maps in monozygotic twins discordant for psychiatric disorders reveal that disease-associated switching at the EIPR1 regulatory loci modulates neural function. PMID:33963283
Substrains matter in phenotyping of C57BL/6 mice. PMID:33441510
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. PMID:33319712
Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities. PMID:33028186
Quantitative analysis of proteins which are members of the same protein complex but cause locus heterogeneity in disease. PMID:32591566
Giant Island Mice Exhibit Widespread Gene Expression Changes in Key Metabolic Organs. PMID:32531054
Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases. PMID:32500119
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Supervised learning is an accurate method for network-based gene classification. PMID:32129827
An atlas of evidence-based phenotypic associations across the mouse phenome. PMID:32127602
p300 and cAMP response element-binding protein-binding protein in skeletal muscle homeostasis, contractile function, and survival. PMID:31898871
Ontology-based prediction of cancer driver genes. PMID:31757986
Disease gene prediction for molecularly uncharacterized diseases. PMID:31276496
HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology. PMID:31255713
The Transcriptomic Toolbox: Resources for Interpreting Large Gene Expression Data within a Precision Medicine Context for Metabolic Disease Atherosclerosis. PMID:31032818
A Bayesian framework that integrates multi-omics data and gene networks predicts risk genes from schizophrenia GWAS data. PMID:30988527
Aligning the Aligners: Comparison of RNA Sequencing Data Alignment and Gene Expression Quantification Tools for Clinical Breast Cancer Research. PMID:30987214
Multi-population GWAS and enrichment analyses reveal novel genomic regions and promising candidate genes underlying bovine milk fatty acid composition. PMID:30841852
Incorporating Knowledge-Driven Insights into a Collaborative Filtering Model to Facilitate the Differential Diagnosis of Rare Diseases. PMID:30815196
Integrated curation and data mining for disease and phenotype models at the Rat Genome Database. PMID:30753478
DeepPVP: phenotype-based prioritization of causative variants using deep learning. PMID:30727941
Ensembl variation resources. PMID:30576484
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. PMID:30476213
A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals. PMID:30476141
Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes. PMID:30423077
HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences. PMID:30083448
A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility. PMID:30078704
Handling Complexity in Animal and Plant Science Research-From Single to Functional Traits: Are We There Yet? PMID:29843407
A Primer for the Rat Genome Database (RGD). PMID:29761460
Massive mining of publicly available RNA-seq data from human and mouse. PMID:29636450
Where to search top-K biomedical ontologies? PMID:29579141
InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk. PMID:29363423
PhenoRank: reducing study bias in gene prioritization through simulation. PMID:29360927
Improving the interoperability of biomedical ontologies with compound alignments. PMID:29316968
Integrating phenotype ontologies with PhenomeNET. PMID:29258588
Matching disease and phenotype ontologies in the ontology alignment evaluation initiative. PMID:29197409
RNA-Sequencing Analysis Reveals a Regulatory Role for Transcription Factor Fezf2 in the Mature Motor Cortex. PMID:28936162
Classification and analysis of a large collection of in vivo bioassay descriptions. PMID:28678787
Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice. PMID:28592500
Whole Genome Sequencing Expands Diagnostic Utility and Improves Clinical Management in Pediatric Medicine. PMID:28567303
The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions. PMID:28400425
Matrix Metalloproteinase-28 Is a Key Contributor to Emphysema Pathogenesis. PMID:28399390
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
GEN3VA: aggregation and analysis of gene expression signatures from related studies. PMID:27846806
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. PMID:27842607
A Novel Drug-Mouse Phenotypic Similarity Method Detects Molecular Determinants of Drug Effects. PMID:27673331
Network topology measures for identifying disease-gene association in breast cancer. PMID:27454166
An integer programming framework for inferring disease complexes from network data. PMID:27307626
Comprehensive coverage of cardiovascular disease data in the disease portals at the Rat Genome Database. PMID:27287925
The cellular microscopy phenotype ontology. PMID:27195102
RegenBase: a knowledge base of spinal cord injury biology for translational research. PMID:27055827
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database. PMID:27009807
Linking MedDRA(®)-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors. PMID:27003817
Reporting phenotypes in mouse models when considering body size as a potential confounder. PMID:26865945
Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle. PMID:26809925
Dintor: functional annotation of genomic and proteomic data. PMID:26691694
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. PMID:26507285
Phenotype-driven strategies for exome prioritization of human Mendelian disease genes. PMID:26229552
Orthology for comparative genomics in the mouse genome database. PMID:26223881
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Mouse Genome Database: From sequence to phenotypes and disease models. PMID:26150326
Publisher’s Note:Abstraction for data integration:Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction. PMID:26101093
Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. PMID:26048076
Concept selection for phenotypes and diseases using learn to rank. PMID:26034558
Capturing domain knowledge from multiple sources: the rare bone disorders use case. PMID:25926964
Text mining in cancer gene and pathway prioritization. PMID:25392685
MitProNet: A knowledgebase and analysis platform of proteome, interactome and diseases for mammalian mitochondria. PMID:25347823
Identification of genes important for cutaneous function revealed by a large scale reverse genetic screen in the mouse. PMID:25340873
Text mining and network analysis of molecular interaction in non-small cell lung cancer by using natural language processing. PMID:25205120
Lean Big Data integration in systems biology and systems pharmacology. PMID:25109570
Systematic analysis of gene properties influencing organ system phenotypes in mammalian perturbations. PMID:25061072
A novel method for gathering and prioritizing disease candidate genes based on construction of a set of disease-related MeSH® terms. PMID:24917541
Convergence of genes and cellular pathways dysregulated in autism spectrum disorders. PMID:24768552
Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen. PMID:24721909
Phenotype ontologies and cross-species analysis for translational research. PMID:24699242
Transcriptome profiling in engrailed-2 mutant mice reveals common molecular pathways associated with autism spectrum disorders. PMID:24355397
Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD. PMID:24267899
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. PMID:24194600
Analyzing gene expression data in mice with the Neuro Behavior Ontology. PMID:24177753
Improved exome prioritization of disease genes through cross-species phenotype comparison. PMID:24162188
Mouse model phenotypes provide information about human drug targets. PMID:24158600
Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking. PMID:24155869
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP. PMID:24131519
Toward knowledge support for analysis and interpretation of complex traits. PMID:24079802
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. PMID:23972281
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species. PMID:23937709
Rat Genome Database: a unique resource for rat, human, and mouse quantitative trait locus data. PMID:23881287
An integrative, translational approach to understanding rare and orphan genetically based diseases. PMID:23853703
Bioinformatics for spermatogenesis: annotation of male reproduction based on proteomics. PMID:23852026
Analysis of disease-associated objects at the Rat Genome Database. PMID:23794737
ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells. PMID:23794736
A knowledge based approach to matching human neurodegenerative disease and animal models. PMID:23717278
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013. PMID:23703215
Chapter 15: disease gene prioritization. PMID:23633938
Combining rules and machine learning for extraction of temporal expressions and events from clinical narratives. PMID:23605114
PhenoMiner: quantitative phenotype curation at the rat genome database. PMID:23603846
Decomposing phenotype descriptions for the human skeletal phenome. PMID:23440304
Mining skeletal phenotype descriptions from scientific literature. PMID:23409017
Exploring genetic, genomic, and phenotypic data at the rat genome database. PMID:23255149
Semantically enabling a genome-wide association study database. PMID:23244533
Transforming growth factor β signaling controls activities of human intestinal CD8(+)T suppressor cells. PMID:23232296
An approach for the identification of targets specific to bone metastasis using cancer genes interactome and gene ontology analysis. PMID:23166660
Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish. PMID:23104991
Supervised segmentation of phenotype descriptions for the human skeletal phenome using hybrid methods. PMID:23061930
Continuation-like semantics for modeling structural process anomalies. PMID:23046705
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. PMID:23046642
Towards improving phenotype representation in OWL. PMID:23046625
Open biomedical pluralism: formalising knowledge about breast cancer phenotypes. PMID:23046572
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. PMID:23046555
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. PMID:22961259
Computational tools for comparative phenomics: the role and promise of ontologies. PMID:22814867
Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases. PMID:22719993
Three ontologies to define phenotype measurement data. PMID:22654893
Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL. PMID:22541594
Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. PMID:22539675
Ontology searching and browsing at the Rat Genome Database. PMID:22434847
The mouse-human anatomy ontology mapping project. PMID:22434834
A Resource of Quantitative Functional Annotation for Homo sapiens Genes. PMID:22384401
Optimizing the phenotyping of rodent ASD models: enrichment analysis of mouse and human neurobiological phenotypes associated with high-risk autism genes identifies morphological, electrophysiological, neurological, and behavioral features. PMID:22348382
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
Physical properties of biological entities: an introduction to the ontology of physics for biology. PMID:22216106
cAMP response element-binding protein is a primary hub of activity-driven neuronal gene expression. PMID:22171029
Proteins: form and function. PMID:22095055
GeneWeaver: a web-based system for integrative functional genomics. PMID:22080549
Exact score distribution computation for ontological similarity searches. PMID:22078312
Improving ontologies by automatic reasoning and evaluation of logical definitions. PMID:22032770
New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models. PMID:21987712
GOMMA: a component-based infrastructure for managing and analyzing life science ontologies and their evolution. PMID:21914205
Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning. PMID:21789201
PhenomeNET: a whole-phenome approach to disease gene discovery. PMID:21737429
A flexible framework for deriving assertions from electronic medical records. PMID:21724741
A gene-phenotype network for the laboratory mouse and its implications for systematic phenotyping. PMID:21625554
Rare structural variation of synapse and neurotransmission genes in autism. PMID:21358714
Identification of Parkinson's disease candidate genes using CAESAR and screening of MAPT and SNCAIP in South African Parkinson's disease patients. PMID:21344240
A common layer of interoperability for biomedical ontologies based on OWL EL. PMID:21343142
Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community. PMID:21261995
Characterization of the proteome, diseases and evolution of the human postsynaptic density. PMID:21170055
Genes and biological processes commonly disrupted in rare and heterogeneous developmental delay syndromes. PMID:21147756
Functional genomics complements quantitative genetics in identifying disease-gene associations. PMID:21085640
The RIKEN integrated database of mammals. PMID:21076152
Laboratory mouse models for the human genome-wide associations. PMID:21072174
Uncovering genes and regulatory pathways related to urinary albumin excretion. PMID:21030601
DEGAS: de novo discovery of dysregulated pathways in human diseases. PMID:20976054
Interoperability between phenotype and anatomy ontologies. PMID:20971987
Improving disease gene prioritization using the semantic similarity of Gene Ontology terms. PMID:20823322
Commentary: mouse genetic nomenclature. Standardization of strain, gene, and protein symbols. PMID:20685919
OntoFox: web-based support for ontology reuse. PMID:20569493
Phenoclustering: online mining of cross-species phenotypes. PMID:20562418
PhenoHM: human-mouse comparative phenome-genome server. PMID:20507906
Phenotype ontologies for mouse and man: bridging the semantic gap. PMID:20427557
Two approaches to integrating phenotype and clinical information. PMID:20351826
Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics. PMID:20205870
Gene prioritization and clustering by multi-view text mining. PMID:20074336
Integrating phenotype ontologies across multiple species. PMID:20064205
The mammalian phenotype ontology: enabling robust annotation and comparative analysis. PMID:20052305
Advances in translational bioinformatics: computational approaches for the hunting of disease genes. PMID:20007728
Entity/quality-based logical definitions for the human skeletal phenome using PATO. PMID:19964203
The rat genome database curators: who, what, where, why. PMID:19956751
EuroPhenome: a repository for high-throughput mouse phenotyping data. PMID:19933761
Looking at cerebellar malformations through text-mined interactomes of mice and humans. PMID:19893633
The Mouse Genome Database: enhancements and updates. PMID:19864252
MouseBook: an integrated portal of mouse resources. PMID:19854936
EMMA--mouse mutant resources for the international scientific community. PMID:19783817
Ontological Discovery Environment: a system for integrating gene-phenotype associations. PMID:19733230
Linking genes to diseases: it's all in the data. PMID:19678910
Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease. PMID:19649761
Annotating the human genome with Disease Ontology. PMID:19594883
Open Biomedical Ontology-based Medline exploration. PMID:19426463
Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. PMID:19426459
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. PMID:19208196
Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: case study of primary immunodeficiencies. PMID:19073697
Removing the cloak of invisibility: phenotyping the mouse. PMID:19048073
The Rat Genome Database 2009: variation, ontologies and pathways. PMID:18996890
The Mouse Genome Database genotypes::phenotypes. PMID:18981050
Information-based methods for predicting gene function from systematic gene knock-downs. PMID:18959798
The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. PMID:18950739
Meta-analysis and profiling of cardiac expression modules. PMID:18780758
Comprehensive association study of type 2 diabetes and related quantitative traits with 222 candidate genes. PMID:18678618
An en masse phenotype and function prediction system for Mus musculus. PMID:18613952
What everybody should know about the rat genome and its online resources. PMID:18443589
The Mouse Tumor Biology database. PMID:18432250
Animal trait ontology: The importance and usefulness of a unified trait vocabulary for animal species. PMID:18272850
The Mouse Genome Database (MGD): mouse biology and model systems. PMID:18158299
Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study. PMID:17947625
Improved human disease candidate gene prioritization using mouse phenotype. PMID:17939863
MUGEN mouse database; animal models of human immunological diseases. PMID:17932065
Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies. PMID:17925014
EuroPhenome and EMPReSS: online mouse phenotyping resource. PMID:17905814
Celsius: a community resource for Affymetrix microarray data. PMID:17570842
MPHASYS: a mouse phenotype analysis system. PMID:17553167
Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base. PMID:17537266
Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources. PMID:17436037
New genes in the evolution of the neural crest differentiation program. PMID:17352807
GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs. PMID:17178752
The Rat Genome Database, update 2007--easing the path from disease to data and back again. PMID:17151068
PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease. PMID:17142238
PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing. PMID:17094228
PhenomicDB: a new cross-species genotype/phenotype resource. PMID:16982638
Understanding mammalian genetic systems: the challenge of phenotyping in the mouse. PMID:16933996
Bio-Ontology and text: bridging the modeling gap. PMID:16870928
Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships. PMID:16783639
OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI. PMID:16381939
The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data. PMID:15774030
Using ontologies to describe mouse phenotypes. PMID:15642100 -
The mammalian phenotype ontology: enabling robust annotation and comparative analysis
PubMed citations: 120.
120 articles citing: The mammalian phenotype ontology: enabling robust annotation and comparative analysis
Mapping the gene network landscape of Alzheimer's disease through integrating genomics and transcriptomics. PMID:35213535
Post-synaptic scaffold protein TANC2 in psychiatric and somatic disease risk. PMID:34964047
Genome-wide identification of microRNA targets reveals positive regulation of the Hippo pathway by miR-122 during liver development. PMID:34907157
Cascading epigenomic analysis for identifying disease genes from the regulatory landscape of GWAS variants. PMID:34807913
Network analysis reveals rare disease signatures across multiple levels of biological organization. PMID:34753928
Drug Repurposing for Atopic Dermatitis by Integration of Gene Networking and Genomic Information. PMID:34721386
Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs. PMID:34645830
OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis. PMID:34632381
Transcriptomic analysis of the seminal vesicle response to the reproductive toxicant acrylamide. PMID:34625024
Contraceptive and Infertility Target DataBase: a contraceptive drug development tool for targeting and analysis of human reproductive specific tissues†. PMID:34514504
Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data. PMID:34489404
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Linking common human diseases to their phenotypes; development of a resource for human phenomics. PMID:34425897
DTI-Voodoo: machine learning over interaction networks and ontology-based background knowledge predicts drug-target interactions. PMID:34320178
Ancestry analysis indicates two different sets of essential genes in eukaryotic model species. PMID:34279742
Genome-Wide Association Studies Reveal Susceptibility Loci for Noninfectious Claw Lesions in Holstein Dairy Cattle. PMID:34122511
Proteomic Dissection of the Impact of Environmental Exposures on Mouse Seminal Vesicle Function. PMID:34089863
Gata2-L359V impairs primitive and definitive hematopoiesis and blocks cell differentiation in murine chronic myelogenous leukemia model. PMID:34078881
Identification of Novel Genomic-Variant Patterns of OR56A5, OR52L1, and CTSD in Retinitis Pigmentosa Patients by Whole-Exome Sequencing. PMID:34070492
Canine DVL2 variant contributes to brachycephalic phenotype and caudal vertebral anomalies. PMID:33599851
Losses of human disease-associated genes in placental mammals. PMID:33575564
Establishment and application of information resource of mutant mice in RIKEN BioResource Research Center. PMID:33455583
Beyond Low-Earth Orbit: Characterizing Immune and microRNA Differentials following Simulated Deep Spaceflight Conditions in Mice. PMID:33376970
Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development. PMID:33242410
TCRD and Pharos 2021: mining the human proteome for disease biology. PMID:33156327
Genome-Wide Association Studies Reveal Susceptibility Loci for Digital Dermatitis in Holstein Cattle. PMID:33142934
Developmental constraint shaped genome evolution and erythrocyte loss in Antarctic fishes following paleoclimate change. PMID:33108368
Alcohol Sensitivity as an Endophenotype of Alcohol Use Disorder: Exploring Its Translational Utility between Rodents and Humans. PMID:33066036
Predicting candidate genes from phenotypes, functions and anatomical site of expression. PMID:33051643
Lipophagy and Lipolysis Status in Lipid Storage and Lipid Metabolism Diseases. PMID:32854299
RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis. PMID:32311035
Structured reviews for data and knowledge-driven research. PMID:32283553
TarGo: network based target gene selection system for human disease related mouse models. PMID:32257911
Incremental data integration for tracking genotype-disease associations. PMID:31986132
Matching whole genomes to rare genetic disorders: Identification of potential causative variants using phenotype-weighted knowledge in the CAGI SickKids5 clinical genomes challenge. PMID:31680375
Hepatic gene expression variations in response to high-fat diet-induced impaired glucose tolerance using RNAseq analysis in collaborative cross mouse population. PMID:31650267
WormBase: a modern Model Organism Information Resource. PMID:31642470
A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases. PMID:31494632
On Finding and Enumerating Maximal and Maximum k-Partite Cliques in k-Partite Graphs. PMID:31448059
A genetics-led approach defines the drug target landscape of 30 immune-related traits. PMID:31253980
PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research. PMID:31160594
Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution. PMID:31154982
Ontology based text mining of gene-phenotype associations: application to candidate gene prediction. PMID:30809638
Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. PMID:30093596
Cross-species systems analysis identifies gene networks differentially altered by sleep loss and depression. PMID:30050989
A genomics approach reveals insights into the importance of gene losses for mammalian adaptations. PMID:29572503
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. PMID:29447159
Another Round of "Clue" to Uncover the Mystery of Complex Traits. PMID:29370075
Integrating phenotype ontologies with PhenomeNET. PMID:29258588
Evaluating phenotype-driven approaches for genetic diagnoses from exomes in a clinical setting. PMID:29044180
Comparative proteomic analysis of growth hormone secretagogue A233 treatment of murine macrophage cells J774A.2 indicates it has a role in antiviral innate response. PMID:28955845
A genomic lifespan program that reorganises the young adult brain is targeted in schizophrenia. PMID:28893375
Leveraging network analytics to infer patient syndrome and identify causal genes in rare disease cases. PMID:28812537
XGR software for enhanced interpretation of genomic summary data, illustrated by application to immunological traits. PMID:27964755
PCAN: phenotype consensus analysis to support disease-gene association. PMID:27923364
Towards precision medicine-based therapies for glioblastoma: interrogating human disease genomics and mouse phenotypes. PMID:27557118
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. PMID:27374120
Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals. PMID:27329977
Leveraging Comparative Genomics to Identify and Functionally Characterize Genes Associated with Sperm Phenotypes in Python bivittatus (Burmese Python). PMID:27200191
Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation. PMID:27011785
Combining Human Disease Genetics and Mouse Model Phenotypes towards Drug Repositioning for Parkinson's disease. PMID:26958284
Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases. PMID:26924528
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. PMID:26896844
PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sources. PMID:26834980
Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol. PMID:26834590
Accelerating Adverse Outcome Pathway Development Using Publicly Available Data Sources. PMID:26809562
Emerging semantics to link phenotype and environment. PMID:26713234
GeneWeaver: data driven alignment of cross-species genomics in biology and disease. PMID:26656951
Applications of comparative evolution to human disease genetics. PMID:26338499
A mouse informatics platform for phenotypic and translational discovery. PMID:26314589
OVA: integrating molecular and physical phenotype data from multiple biomedical domain ontologies with variant filtering for enhanced variant prioritization. PMID:26272982
De novo deletions and duplications of 17q25.3 cause susceptibility to cardiovascular malformations. PMID:26070612
Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation. PMID:26056000
Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens. PMID:25825651
Gene networks underlying convergent and pleiotropic phenotypes in a large and systematically-phenotyped cohort with heterogeneous developmental disorders. PMID:25781962
A bioinformatics expert system linking functional data to anatomical outcomes in limb regeneration. PMID:25729585
Duplications in ADHD patients harbour neurobehavioural genes that are co-expressed with genes associated with hyperactivity in the mouse. PMID:25656289
PhenomeExpress: a refined network analysis of expression datasets by inclusion of known disease phenotypes. PMID:25631385
Finding our way through phenotypes. PMID:25562316
INFRAFRONTIER--providing mutant mouse resources as research tools for the international scientific community. PMID:25414328
Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data. PMID:25300367
Phenotyping structural abnormalities in mouse embryos using high-resolution episcopic microscopy. PMID:25256713
Using association rule mining to determine promising secondary phenotyping hypotheses. PMID:24932005
Identification of a QTL in Mus musculus for alcohol preference, withdrawal, and Ap3m2 expression using integrative functional genomics and precision genetics. PMID:24923803
Mining the 3'UTR of autism-implicated genes for SNPs perturbing microRNA regulation. PMID:24747189
Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene. PMID:24700285
Obesity-associated variants within FTO form long-range functional connections with IRX3. PMID:24646999
Pheno-Pub: a total support system for the publication of mouse phenotypic data on the web. PMID:24220852
Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking. PMID:24155869
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species. PMID:23937709
A daily-updated tree of (sequenced) life as a reference for genome research. PMID:23778980
Network topologies and convergent aetiologies arising from deletions and duplications observed in individuals with autism. PMID:23754953
PhenoDigm: analyzing curated annotations to associate animal models with human diseases. PMID:23660285
FYPO: the fission yeast phenotype ontology. PMID:23658422
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis. PMID:23650583
Chapter 15: disease gene prioritization. PMID:23633938
Neurocarta: aggregating and sharing disease-gene relations for the neurosciences. PMID:23442263
Towards a bioinformatics of patterning: a computational approach to understanding regulative morphogenesis. PMID:23429669
Planform: an application and database of graph-encoded planarian regenerative experiments. PMID:23426257
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. PMID:23161684
Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish. PMID:23104991
Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models. PMID:23033316
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. PMID:22961259
Concept annotation in the CRAFT corpus. PMID:22776079
Three ontologies to define phenotype measurement data. PMID:22654893
Mouse genetic and phenotypic resources for human genetics. PMID:22422677
Accelerating discovery for complex neurological and behavioral disorders through systems genetics and integrative genomics in the laboratory mouse. PMID:22422471
MouseFinder: Candidate disease genes from mouse phenotype data. PMID:22331800
Congenital diaphragmatic hernia candidate genes derived from embryonic transcriptomes. PMID:22315423
GeneWeaver: a web-based system for integrative functional genomics. PMID:22080549
The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse. PMID:22075990
Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice. PMID:22028326
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text. PMID:21995939
Protein networks as logic functions in development and cancer. PMID:21980275
Autism candidate genes via mouse phenomics. PMID:21397722
Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community. PMID:21261995
Benchmarking ontologies: bigger or better? PMID:21249231
Laboratory mouse models for the human genome-wide associations. PMID:21072174
SUPERFAMILY 1.75 including a domain-centric gene ontology method. PMID:21062816
The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. PMID:21051359 -
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
PubMed citations: 93.
93 articles citing: The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
The Vulnerability of the Developing Brain: Analysis of Highly Expressed Genes in Infant C57BL/6 Mouse Hippocampus in Relation to Phenotypic Annotation Derived From Mutational Studies. PMID:35023907
Mouse Genome Informatics (MGI): latest news from MGD and GXD. PMID:34698891
Quantitative phosphoproteomics reveals GSK3A substrate network is involved in the cryodamage of sperm motility. PMID:34596222
Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base. PMID:34379637
Genetic mapping of novel modifiers for ApcMin induced intestinal polyps' development using the genetic architecture power of the collaborative cross mice. PMID:34294033
CNVxplorer: a web tool to assist clinical interpretation of CNVs in rare disease patients. PMID:34019647
Curation of over 10 000 transcriptomic studies to enable data reuse. PMID:33599246
The Human Phenotype Ontology in 2021. PMID:33264411
Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity. PMID:33143653
The mouse Gene Expression Database (GXD): 2021 update. PMID:33104772
Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities. PMID:33028186
The JAX Synteny Browser for mouse-human comparative genomics. PMID:31776723
The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation. PMID:31769834
Shifts in myeloarchitecture characterise adolescent development of cortical gradients. PMID:31724948
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:31701156
Mouse Phenome Database: a data repository and analysis suite for curated primary mouse phenotype data. PMID:31696236
Data-driven method to enhance craniofacial and oral phenotype vocabularies. PMID:31668172
Network-Based Functional Prediction Augments Genetic Association To Predict Candidate Genes for Histamine Hypersensitivity in Mice. PMID:31645420
Potentially repurposable drugs for schizophrenia identified from its interactome. PMID:31481665
Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response. PMID:31335644
MutationDistiller: user-driven identification of pathogenic DNA variants. PMID:31106342
Quantitative phenotype analysis to identify, validate and compare rat disease models. PMID:30938777
Curating gene sets: challenges and opportunities for integrative analysis. PMID:30888410
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data. PMID:30567491
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. PMID:30476213
The mouse Gene Expression Database (GXD): 2019 update. PMID:30335138
Classification, Ontology, and Precision Medicine. PMID:30304648
A novel role for C-C motif chemokine receptor 2 during infection with hypervirulent Mycobacterium tuberculosis. PMID:30115997
Computational resources associating diseases with genotypes, phenotypes and exposures. PMID:30102366
An automated identification and analysis of ontological terms in gastrointestinal diseases and nutrition-related literature provides useful insights. PMID:30065857
A new bioinformatics tool to help assess the significance of BRCA1 variants. PMID:29996917
High-throughput mouse phenomics for characterizing mammalian gene function. PMID:29626206
InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk. PMID:29363423
Reproducibility and replicability of rodent phenotyping in preclinical studies. PMID:29357292
Tackling the challenges of matching biomedical ontologies. PMID:29335022
Morphometric Similarity Networks Detect Microscale Cortical Organization and Predict Inter-Individual Cognitive Variation. PMID:29276055
Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice. PMID:29136208
eRAM: encyclopedia of rare disease annotations for precision medicine. PMID:29106618
Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse. PMID:29092072
Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse. PMID:28838066
Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice. PMID:28592500
Annotation of functional impact of voltage-gated sodium channel mutations. PMID:28168870
Highly variable penetrance of abnormal phenotypes in embryonic lethal knockout mice. PMID:27996060
Massive dysregulation of genes involved in cell signaling and placental development in cloned cattle conceptus and maternal endometrium. PMID:27940919
Searching the Mouse Genome Informatics (MGI) Resources for Information on Mouse Biology from Genotype to Phenotype. PMID:27930808
Open Targets: a platform for therapeutic target identification and validation. PMID:27899665
The neXtProt knowledgebase on human proteins: 2017 update. PMID:27899619
The Pre-Eclampsia Ontology: A Disease Ontology Representing the Domain Knowledge Specific to Pre-Eclampsia. PMID:27788142
Temporal dynamics of the developing lung transcriptome in three common inbred strains of laboratory mice reveals multiple stages of postnatal alveolar development. PMID:27602285
The Current Landscape of Genetic Testing in Cardiovascular Malformations: Opportunities and Challenges. PMID:27504451
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. PMID:27374120
DermO; an ontology for the description of dermatologic disease. PMID:27296450
PhenoImageShare: an image annotation and query infrastructure. PMID:27267125
Semantic interrogation of a multi knowledge domain ontological model of tendinopathy identifies four strong candidate risk genes. PMID:26804977
Cytoplasmic Rbfox1 Regulates the Expression of Synaptic and Autism-Related Genes. PMID:26687839
MouseNet v2: a database of gene networks for studying the laboratory mouse and eight other model vertebrates. PMID:26527726
Deciphering the mechanisms of developmental disorders: phenotype analysis of embryos from mutant mouse lines. PMID:26519470
The digital revolution in phenotyping. PMID:26420780
Talking welfare: the importance of a common language. PMID:26286857
Best behaviour? Ontologies and the formal description of animal behaviour. PMID:26215546
Allele, phenotype and disease data at Mouse Genome Informatics: improving access and analysis. PMID:26162703
Mouse Genome Database: From sequence to phenotypes and disease models. PMID:26150326
Cross-organism analysis using InterMine. PMID:26097192
Disease insights through cross-species phenotype comparisons. PMID:26092691
Visual annotation display (VLAD): a tool for finding functional themes in lists of genes. PMID:26047590
The mouse gene expression database: New features and how to use them effectively. PMID:26045019
GXD: a community resource of mouse Gene Expression Data. PMID:25939429
Linking gene expression to phenotypes via pathway information. PMID:25901272
Unraveling the association between mRNA expressions and mutant phenotypes in a genome-wide assessment of mice. PMID:25825715
Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens. PMID:25825651
Similarity-based search of model organism, disease and drug effect phenotypes. PMID:25763178
Methodology for the inference of gene function from phenotype data. PMID:25495798
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease. PMID:25355511
The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease. PMID:25348401
Organ system heterogeneity DB: a database for the visualization of phenotypes at the organ system level. PMID:25313158
Phenotyping structural abnormalities in mouse embryos using high-resolution episcopic microscopy. PMID:25256713
Text mining and network analysis of molecular interaction in non-small cell lung cancer by using natural language processing. PMID:25205120
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. PMID:24958384
Commentary on Shimoyama et al. (2012): three ontologies to define phenotype measurement data. PMID:24795755
Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families. PMID:24702956
Phenotype ontologies and cross-species analysis for translational research. PMID:24699242
Thematic series on biomedical ontologies in JBMS: challenges and new directions. PMID:24602198
Protein profiles associated with context fear conditioning and their modulation by memantine. PMID:24469516
The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. PMID:24285300
Mouse phenome database. PMID:24243846
The mouse Gene Expression Database (GXD): 2014 update. PMID:24163257
The Drosophila phenotype ontology. PMID:24138933
The ontology of craniofacial development and malformation for translational craniofacial research. PMID:24124010
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. PMID:24093723
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases. PMID:24038354
PosMed: Ranking genes and bioresources based on Semantic Web Association Study. PMID:23761449
PhenoDigm: analyzing curated annotations to associate animal models with human diseases. PMID:23660285
InterMOD: integrated data and tools for the unification of model organism research. PMID:23652793 -
Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens
PubMed citations: 23.
23 articles citing: Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. PMID:35317743
Dimensional reduction of phenotypes from 53 000 mouse models reveals a diverse landscape of gene function. PMID:34870209
The Human Disease Ontology 2022 update. PMID:34755882
Pleiotropy data resource as a primer for investigating co-morbidities/multi-morbidities and their role in disease. PMID:34524473
Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology. PMID:33231642
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier. PMID:33206638
DDIEM: drug database for inborn errors of metabolism. PMID:32527280
Formal axioms in biomedical ontologies improve analysis and interpretation of associated data. PMID:31821406
Components of genetic associations across 2,138 phenotypes in the UK Biobank highlight adipocyte biology. PMID:31492854
New models for human disease from the International Mouse Phenotyping Consortium. PMID:31127358
Xenbase: Facilitating the Use of Xenopus to Model Human Disease. PMID:30863320
Ontology-based validation and identification of regulatory phenotypes. PMID:30423068
The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation. PMID:30100824
Mouse Genome Informatics (MGI) Resource: Genetic, Genomic, and Biological Knowledgebase for the Laboratory Mouse. PMID:28838066
Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium. PMID:28650483
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636
Exploring human disease using the Rat Genome Database. PMID:27736745
High-throughput discovery of novel developmental phenotypes. PMID:27626380
Special issue on bio-ontologies and phenotypes. PMID:26682035
Use of model organism and disease databases to support matchmaking for human disease gene discovery. PMID:26269093
Best behaviour? Ontologies and the formal description of animal behaviour. PMID:26215546
Allele, phenotype and disease data at Mouse Genome Informatics: improving access and analysis. PMID:26162703
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version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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version: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: MP; Mammalian Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.kg1x4z; Last edited: June 22, 2021, 12:10 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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