Minimum Information Required for A Glycomics Experiment - Sample Preparation
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Minimum Information Required for A Glycomics Experiment - Sample Preparation
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
MIRAGE - Sample Preparation
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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Minimum Information Required for A Glycomics Experiment - Sample Preparation
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
MIRAGE - Sample Preparation
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Other names: MIRAGE - Sample Preparation
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Minimum Information Required for A Glycomics Experiment - Sample Preparation
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
MIRAGE - Sample Preparation
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
MIRAGE (Minimum Information Required for A Glycomics Experiment) was created to improve the quality of glycomics data in the scientific literature. The sample preparation guidelines are designed to include all aspects of sample generation, purification and modification from biological and/or synthetic material. Fundamentally, the application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets. In addition, these guidelines are considered as a common basis for any further MIRAGE reporting guidelines in order to keep the requirements for data analysis short and consistent.
Description
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MIRAGE (Minimum Information Required for A Glycomics Experiment) was created to improve the quality of glycomics data in the scientific literature. The sample preparation guidelines are designed to include all aspects of sample generation, purification and modification from biological and/or synthetic material. Fundamentally, the application of MIRAGE sample preparation guidelines will lead to improved recording of experimental protocols and reporting of understandable and reproducible glycomics datasets. In addition, these guidelines are considered as a common basis for any further MIRAGE reporting guidelines in order to keep the requirements for data analysis short and consistent.
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Webpage:
http://www.beilstein-institut.de/en/projects/mirage/guidelines#sample_preparationsWebpage
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http://www.beilstein-institut.de/en/projects/mirage/guidelines#sample_preparations
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
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MIRAGE: the minimum information required for a glycomics experiment
PMID: 24653214
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets
PMID: 27654115
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
MIRAGE: the minimum information required for a glycomics experiment
PMID: 24653214
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets
PMID: 27654115
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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MIRAGE: the minimum information required for a glycomics experiment
PubMed citations: 53.
53 articles citing: MIRAGE: the minimum information required for a glycomics experiment
Mass spectrometric quantification of plasma glycosphingolipids in human GM3 ganglioside deficiency. PMID:34917767
Serum N-Glycome Diversity in Teleost and Chondrostrean Fishes. PMID:34859056
Mass spectrometry in clinical glycomics: The path from biomarker identification to clinical implementation. PMID:34820521
Glycoproteome remodeling in MLL-rearranged B-cell precursor acute lymphoblastic leukemia. PMID:34646384
Glycosylation: Rising Potential for Prostate Cancer Evaluation. PMID:34359624
Platelet and myeloid cell phenotypes in a rat model of Fabry disease. PMID:34320241
The Hitchhiker's guide to glycoproteomics. PMID:34282822
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Human Influenza Virus Hemagglutinins Contain Conserved Oligomannose N-Linked Glycans Allowing Potent Neutralization by Lectins. PMID:32298658
Glycan Profiles of gp120 Protein Vaccines from Four Major HIV-1 Subtypes Produced from Different Host Cell Lines under Non-GMP or GMP Conditions. PMID:31941770
Natural and Synthetic Sialylated Glycan Microarrays and Their Applications. PMID:31572731
Endotracheal tube mucus as a source of airway mucus for rheological study. PMID:31389736
Sulfated Lewis A trisaccharide on oviduct membrane glycoproteins binds bovine sperm and lengthens sperm lifespan. PMID:31337705
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Revisiting the Language of Glycoscience: Readers, Writers and Erasers in Carbohydrate Biochemistry. PMID:31317590
Protein Glycosylation and Tumor Microenvironment Alterations Driving Cancer Hallmarks. PMID:31157165
MIReAD, a minimum information standard for reporting arthropod abundance data. PMID:31024009
Serum IgM Glycosylation Associated with Tuberculosis Infection in Mice. PMID:30918063
GRITS Toolbox-a freely available software for processing, annotating and archiving glycomics mass spectrometry data. PMID:30913289
Identification of a secondary binding site in human macrophage galactose-type lectin by microarray studies: Implications for the molecular recognition of its ligands. PMID:30504228
Protein-Specific Analysis of Invertebrate Glycoproteins. PMID:30276752
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Glycomics@ExPASy: Bridging the Gap. PMID:30097532
Meeting Report of the International Life Science Integration Workshop 2018. PMID:29982395
Emerging glycobiology tools: A renaissance in accessibility. PMID:29759530
Airway glycomic and allergic inflammatory consequences resulting from keratan sulfate galactose 6-O-sulfotransferase (CHST1) deficiency. PMID:29659839
Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award. PMID:29644549
Alterations of the Human Skin N- and O-Glycome in Basal Cell Carcinoma and Squamous Cell Carcinoma. PMID:29619343
Neuropathic pain in a Fabry disease rat model. PMID:29563343
Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses. PMID:29553244
Over forty years of bladder cancer glycobiology: Where do glycans stand facing precision oncology? PMID:29207682
GLYDE-II: The GLYcan data exchange format. PMID:28955652
GlyTouCan: an accessible glycan structure repository. PMID:28922742
Automated N-Glycosylation Sequencing Of Biopharmaceuticals By Capillary Electrophoresis. PMID:28916753
Building a PGC-LC-MS N-glycan retention library and elution mapping resource. PMID:28905148
COG7 deficiency in Drosophila generates multifaceted developmental, behavioral and protein glycosylation phenotypes. PMID:28883096
Glycomic and glycoproteomic analysis of glycoproteins-a tutorial. PMID:28585084
Unlocking Cancer Glycomes from Histopathological Formalin-fixed and Paraffin-embedded (FFPE) Tissue Microdissections. PMID:28122943
Recent Advances in the Analysis of Complex Glycoproteins. PMID:28105826
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. PMID:27993942
The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. PMID:27654115
Minimum information required for a DMET experiment reporting. PMID:27548815
Glycomics & Glycoproteomics in Glycoconjugate journal. PMID:27178342
Maturing Glycoproteomics Technologies Provide Unique Structural Insights into the N-glycoproteome and Its Regulation in Health and Disease. PMID:26929216
Glycomics and glycoproteomics of membrane proteins and cell-surface receptors: Present trends and future opportunities. PMID:26872045
Algorithms and design strategies towards automated glycoproteomics analysis. PMID:26728195
Site-specific O-Glycosylation Analysis of Human Blood Plasma Proteins. PMID:26598643
Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines : HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. PMID:26511985
GlycoMob: an ion mobility-mass spectrometry collision cross section database for glycomics. PMID:26314736
Preventing E-cadherin aberrant N-glycosylation at Asn-554 improves its critical function in gastric cancer. PMID:26189796
Clinical Glycomics Employing Graphitized Carbon Liquid Chromatography-Mass Spectrometry. PMID:25750456
GlycoPattern: a web platform for glycan array mining. PMID:25143288 -
The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets
PubMed citations: 28.
28 articles citing: The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets
Glycoproteome remodeling in MLL-rearranged B-cell precursor acute lymphoblastic leukemia. PMID:34646384
Glycosylation: Rising Potential for Prostate Cancer Evaluation. PMID:34359624
The Hitchhiker's guide to glycoproteomics. PMID:34282822
Characterization and statistical modeling of glycosylation changes in sickle cell disease. PMID:33666655
Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication. PMID:33349503
A chronic strain of the cystic fibrosis pathogen Pandoraea pulmonicola expresses a heterogenous hypo-acylated lipid A. PMID:33048281
Decrease of core 2 O-glycans on synovial lubricin in osteoarthritis reduces galectin-3 mediated crosslinking. PMID:32928962
Human Influenza Virus Hemagglutinins Contain Conserved Oligomannose N-Linked Glycans Allowing Potent Neutralization by Lectins. PMID:32298658
β-Catenin/CBP inhibition alters epidermal growth factor receptor fucosylation status in oral squamous cell carcinoma. PMID:32203567
Reference glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes reveal cell-type and culture stage-specific glycan phenotypes. PMID:31972267
Natural and Synthetic Sialylated Glycan Microarrays and Their Applications. PMID:31572731
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Protein Glycosylation and Tumor Microenvironment Alterations Driving Cancer Hallmarks. PMID:31157165
Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping. PMID:31065629
Characterisation of N-glycans in the epithelial-like tissue of the rat cochlea. PMID:30733536
Recommendations for reporting ion mobility Mass Spectrometry measurements. PMID:30707468
Multi-isotype Glycoproteomic Characterization of Serum Antibody Heavy Chains Reveals Isotype- and Subclass-Specific N-Glycosylation Profiles. PMID:30659065
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Emerging glycobiology tools: A renaissance in accessibility. PMID:29759530
Collision Cross Sections and Ion Mobility Separation of Fragment Ions from Complex N-Glycans. PMID:29675741
Cracking the Sugar Code by Mass Spectrometry : An Invited Perspective in Honor of Dr. Catherine E. Costello, Recipient of the 2017 ASMS Distinguished Contribution Award. PMID:29644549
Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses. PMID:29553244
Over forty years of bladder cancer glycobiology: Where do glycans stand facing precision oncology? PMID:29207682
GlyTouCan: an accessible glycan structure repository. PMID:28922742
Profiling Anti-Neu5Gc IgG in Human Sera with a Sialoglycan Microarray Assay. PMID:28745644
Glycomic and glycoproteomic analysis of glycoproteins-a tutorial. PMID:28585084
Recent Advances in the Analysis of Complex Glycoproteins. PMID:28105826
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data. PMID:27993942
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protocol
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
sample preparation for assay
metasource: Fairsharing.org
version: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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protocol
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
sample preparation for assay
metasource: Fairsharing.orgversion: FAIRsharing.org: MIRAGE - Sample Preparation; Minimum Information Required for A Glycomics Experiment - Sample Preparation; DOI: https://doi.org/10.25504/FAIRsharing.vrhbra; Last edited: July 13, 2021, 8:51 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
protocol sample preparation for assay
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