MINAS - A Database of Metal Ions in Nucleic AcidS

Names

More detailed information about this field from each metasource. ×

MINAS - A Database of Metal Ions in Nucleic AcidS

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

MINAS

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

---

minas

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

Close

Other names: MINAS, minas

MINAS contains the exact geometric information on the first and second-shell coordinating ligands of every metal ion present in nucleic acid structures that are deposited in the PDB and NDB. Containing also the sequence information of the binding pocket-proximal nucleotides, this database allows for a detailed search of all combinations of potential ligands and of coordination environments of metal ions. MINAS is therefore a perfect new tool to classify metal ion binding pockets in nucleic acids by statistics and to draw general conclusions about the different coordination properties of these ions. This record has been marked as Uncertain because the homepage for this resource is no longer active, and we have not been able to get in touch with the owners of the resource. Please contact us if you have any information regarding MINAS.

Webpage:

Publications:

Publications

More detailed information about this field from each metasource. ×

Controlling ribozyme activity by metal ions
PMID: 20047851

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

MINAS--a database of Metal Ions in Nucleic AcidS
PMID: 22096233

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

---

http://dx.doi.org/DOI:10.1016/j.ccr.2007.03.008

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

http://dx.doi.org/10.1093/nar/GKR920

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Close

• Controlling ribozyme activity by metal ions PubMed citations: 28.

  28 articles citing: Controlling ribozyme activity by metal ions

  ×

  Coordination Chemistry of Nucleotides and Antivirally Active Acyclic Nucleoside Phosphonates, including Mechanistic Considerations. PMID:35565975

  ---

  Artificial Intelligence Resolves Kinetic Pathways of Magnesium Binding to RNA. PMID:35084846

  ---

  Molecular Features and Metal Ions That Influence 10-23 DNAzyme Activity. PMID:32646019

  ---

  Hofmeister Series for Metal-Cation-RNA Interactions: The Interplay of Binding Affinity and Exchange Kinetics. PMID:32366101

  ---

  An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes. PMID:31095369

  ---

  Influence of Na+ and Mg2+ ions on RNA structures studied with molecular dynamics simulations. PMID:29718375

  ---

  Physical Principles and Extant Biology Reveal Roles for RNA-Containing Membraneless Compartments in Origins of Life Chemistry. PMID:29560725

  ---

  Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding. PMID:29218637

  ---

  Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme. PMID:29081514

  ---

  Parity-dependent hairpin configurations of repetitive DNA sequence promote slippage associated with DNA expansion. PMID:28827328

  ---

  The X-ray Structures of Six Octameric RNA Duplexes in the Presence of Different Di- and Trivalent Cations. PMID:27355942

  ---

  A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class. PMID:26473980

  ---

  Assessment of metal-assisted nucleophile activation in the hepatitis delta virus ribozyme from molecular simulation and 3D-RISM. PMID:26170378

  ---

  Comparison of structural, thermodynamic, kinetic and mass transport properties of Mg(2+) ion models commonly used in biomolecular simulations. PMID:25736394

  ---

  Endogenous polyamine function--the RNA perspective. PMID:25232095

  ---

  Nucleic acid catalysis: metals, nucleobases, and other cofactors. PMID:24730975

  ---

  Solution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain. PMID:24652468

  ---

  NMR structure of the 5' splice site in the group IIB intron Sc.ai5γ--conformational requirements for exon-intron recognition. PMID:24448450

  ---

  Bridging the gap between theory and experiment to derive a detailed understanding of hammerhead ribozyme catalysis. PMID:24156941

  ---

  Lewis acid catalysis of phosphoryl transfer from a copper(II)-NTP complex in a kinase ribozyme. PMID:23358821

  ---

  Identification of the catalytic Mg²⁺ ion in the hepatitis delta virus ribozyme. PMID:23311293

  ---

  MetalionRNA: computational predictor of metal-binding sites in RNA structures. PMID:22110243

  ---

  MINAS--a database of Metal Ions in Nucleic AcidS. PMID:22096233

  ---

  Metal-ion-dependent folding of a uranyl-specific DNAzyme: insight into function from fluorescence resonance energy transfer studies. PMID:22052817

  ---

  Rapid steps in the glmS ribozyme catalytic pathway: cation and ligand requirements. PMID:21395279

  ---

  Chemical contrast for imaging living systems: molecular vibrations drive CARS microscopy. PMID:21321552

  ---

  Analysis of metal ion dependence in glmS ribozyme self-cleavage and coenzyme binding. PMID:21108273

  ---

  Hammerhead ribozymes: true metal or nucleobase catalysis? Where is the catalytic power from? PMID:20714304
• MINAS--a database of Metal Ions in Nucleic AcidS PubMed citations: 13.

  13 articles citing: MINAS--a database of Metal Ions in Nucleic AcidS

  ×

  Coordination Chemistry of Nucleotides and Antivirally Active Acyclic Nucleoside Phosphonates, including Mechanistic Considerations. PMID:35565975

  ---

  Tb3+-Cleavage Assays Reveal Specific Mg2+ Binding Sites Necessary to Pre-fold the btuB Riboswitch for AdoCbl Binding. PMID:28377919

  ---

  Mg2+ ions: do they bind to nucleobase nitrogens? PMID:27923930

  ---

  The X-ray Structures of Six Octameric RNA Duplexes in the Presence of Different Di- and Trivalent Cations. PMID:27355942

  ---

  Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics. PMID:27153067

  ---

  An active site rearrangement within the Tetrahymena group I ribozyme releases nonproductive interactions and allows formation of catalytic interactions. PMID:26567314

  ---

  Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection. PMID:25800744

  ---

  The role of Mg(II) in DNA cleavage site recognition in group II intron ribozymes: solution structure and metal ion binding sites of the RNA-DNA complex. PMID:24895129

  ---

  MetalS(3), a database-mining tool for the identification of structurally similar metal sites. PMID:24699831

  ---

  Principles of ion recognition in RNA: insights from the group II intron structures. PMID:24570483

  ---

  RNA Bricks--a database of RNA 3D motifs and their interactions. PMID:24220091

  ---

  Solving nucleic acid structures by molecular replacement: examples from group II intron studies. PMID:24189228

  ---

  MetalPDB: a database of metal sites in biological macromolecular structures. PMID:23155064
• http://dx.doi.org/DOI:10.1016/j.ccr.2007.03.008
• http://dx.doi.org/10.1093/nar/GKR920

Tags:

Tags

More detailed information about this field from each metasource. ×

atomic coordinate

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

deoxyribonucleic acid

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

ligand

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

metal ion binding

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

structure

metasource: Fairsharing.org
version: FAIRsharing.org: MINAS; MINAS - A Database of Metal Ions in Nucleic AcidS; DOI: https://doi.org/10.25504/FAIRsharing.wqtfkv; Last edited: Jan. 20, 2020, 11:37 a.m.; Last accessed: Jan 03 2022 7:08 p.m.

---

structure databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

nucleic acid structure

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

---

structure prediction

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

---

nucleic acid structure analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

---

nucleic acids

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

---

nucleic acid sites, features and motifs

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

---

protein binding sites

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

Close

atomic coordinate dna ligand metal ion binding structure structure nucleic acid structure structure prediction nucleic acid structure analysis nucleic acids nucleic acid sites, features and motifs protein binding sites