Big Data Nucleic Acid Simulations Database
Names
More detailed information about this field from each metasource.
Big Data Nucleic Acid Simulations Database
metasource: Fairsharing.org
version: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
BIGNASim
metasource: Fairsharing.org
version: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
BigNASim
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:08.717624
bignasim
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:08.717624
Names
More detailed information about this field from each metasource.
Big Data Nucleic Acid Simulations Database
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
BIGNASim
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
BigNASim
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
bignasim
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
Other names: BIGNASim, BigNASim, bignasim
Names
More detailed information about this field from each metasource.
Big Data Nucleic Acid Simulations Database
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
BIGNASim
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
BigNASim
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
bignasim
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing.
Description
More detailed information about this field from each metasource.
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses and metadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogen bonding and stacking energies and geometries) are pre-calculated for the trajectories available and shown using the interactive visualization offered by NAFlex interface. Additionaly, whole trajectories, fragments or meta-trajectories can be analysed or downloaded for further in-house processing.
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures.BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on twonoSQL database engines: Cassandra to hold trajectory data and MongoDB for analyses andmetadata. Most common analyses (helical parameters, NMR observables, sitffness, hydrogenbonding and stacking energies and geometries) are pre-calculated for the trajectories available andshown using the interactive visualization offered by NAFlex interface. Additionaly, wholetrajectories, fragments or meta-trajectories can be analysed or downloaded for further in-houseprocessing.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
Webpage:
http://mmb.irbbarcelona.org/BIGNASimWebpage
More detailed information about this field from each metasource.
http://mmb.irbbarcelona.org/BIGNASim
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://mmb.irbbarcelona.org/ParmBSC1
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://mmb.irbbarcelona.org/BIGNASim/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
Publications:
Publications
More detailed information about this field from each metasource.
http://dx.doi.org/10.1093/nar/gkv1301
metasource: Fairsharing.org
version: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:08.717624
Publications
More detailed information about this field from each metasource.
http://dx.doi.org/10.1093/nar/gkv1301
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:08.717624
Tags:
Tags
More detailed information about this field from each metasource.
modeling and simulation
metasource: Fairsharing.org
version: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
nucleic acid sequence
metasource: Fairsharing.org
version: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
nucleic acid structure
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
nucleic acids
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:08.717624
dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:08.717624
simulation experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:08.717624
Tags
More detailed information about this field from each metasource.
modeling and simulation
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
nucleic acid sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: BIGNASim; Big Data Nucleic Acid Simulations Database; DOI: https://doi.org/10.25504/FAIRsharing.k5a3yt; Last edited: Jan. 3, 2020, 12:02 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
nucleic acid structure
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
nucleic acids
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
dna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
simulation experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:08.717624
modeling and simulation nucleic acid sequence structure structure nucleic acid structure nucleic acids dna simulation experiment
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