RNA structural modules and their interactions
structure nucleic acid structure
Evolutionary-oriented database of RNA recognition motif sequences.
A database of 3D RNA fragments within known RNA structures
Small molecule inhibitors of RNA
Base interactions in RNA structures
The BricKs Ontology (BKO) provides Systems Biology Graphical Notation representations of recurring concepts in molecular networks. These representations, called bricks, are associated in the ontology ...
Packing of RNA molecules and complexes
RNA SSTRAND contains known secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known secondary structures, and to provide ...
RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structu ...
Within this database you will to able to find more than 12,000 extracted three-dimensional junction and kissing loop structures as well as detailed annotations for each.
The Nucleic Acids Database contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, str ...
Nearest Neighbor parameters for predicting RNA folding
Prediction of viral microRNA candidate hairpins
G-quadruplex motifs and potentially G-quadruplex regulated genes
MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences ...
Predicted structures of internal transcribed spacer 2 (ITS2)
NAPP (Nucleic Acids Phylogenetic Profile) enables users to retrieve RNA-rich clusters from any genome in a list of 1000+ sequenced bacterial genomes. RNA-rich clusters can be viewed separately or, alt ...
Database for binding affinities of protein-nucleic acid complexes and their mutants.
RNArchitecture is a database that provides a comprehensive description of relationships between known families of structured ncRNAs, with focus on sequence and structure similarities. RNArchitecture a ...
Human RNA-RNA and RNA-protein interactions
Database designed to provide a comprehensive perspective and understanding of RNA motif structure, function, tertiary interactions and their relationships.