RNAJunction: A Database of RNA Junction and Kissing loop Structure
Names
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RNAJunction: A Database of RNA Junction and Kissing loop Structure
metasource: Fairsharing.org
version: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
RNAJunction
metasource: Fairsharing.org
version: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
RNAJunction: A Database of RNA Junction and Kissing loop Structure
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
RNAJunction
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
RNAJunction: A Database of RNA Junction and Kissing loop Structure
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
RNAJunction
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Within this database you will to able to find more than 12,000 extracted three-dimensional junction and kissing loop structures as well as detailed annotations for each.
Description
More detailed information about this field from each metasource.
Within this database you will to able to find more than 12,000 extracted three-dimensional junction and kissing loop structures as well as detailed annotations for each.
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
RNA structural elements: helical junctions, internal loops, bulges and loop-loop interactions
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://rnajunction.abcc.ncifcrf.govWebpage
More detailed information about this field from each metasource.
http://rnajunction.abcc.ncifcrf.gov
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://rnajunction.abcc.ncifcrf.gov/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
PMID: 17947325
metasource: Fairsharing.org
version: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications
More detailed information about this field from each metasource.
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
PMID: 17947325
metasource: Fairsharing.org
version: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
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RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
PubMed citations: 82.
82 articles citing: RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
Refining the RNA Force Field with Small-Angle X-ray Scattering of Helix-Junction-Helix RNA. PMID:35404614
Anhydrous Nucleic Acid Nanoparticles for Storage and Handling at Broad Range of Temperatures. PMID:35128787
Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures. PMID:34445259
Thermostability, Tunability, and Tenacity of RNA as Rubbery Anionic Polymeric Materials in Nanotechnology and Nanomedicine-Specific Cancer Targeting with Undetectable Toxicity. PMID:34038115
RNA structure prediction using positive and negative evolutionary information. PMID:33125376
Use of human peripheral blood mononuclear cells to define immunological properties of nucleic acid nanoparticles. PMID:33097923
Modulating Immune Response with Nucleic Acid Nanoparticles. PMID:31627288
Tuning the size, shape and structure of RNA nanoparticles for favorable cancer targeting and immunostimulation. PMID:31456362
Analyzing Secondary Structure Patterns in DNA Aptamers Identified via CompELS. PMID:31010064
Out-of-Plane Aptamer Functionalization of RNA Three-Helix Tiles. PMID:30986942
Know Your Enemy: Successful Bioinformatic Approaches to Predict Functional RNA Structures in Viral RNAs. PMID:29354101
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview. PMID:29297679
RNA versatility, flexibility, and thermostability for practice in RNA nanotechnology and biomedical applications. PMID:29105333
Favorable biodistribution, specific targeting and conditional endosomal escape of RNA nanoparticles in cancer therapy. PMID:28987384
Predicting RNA Structure with Vfold. PMID:28986779
Engineering the RNA-Nanobio Interface. PMID:28952492
Self-assembly of multi-stranded RNA motifs into lattices and tubular structures. PMID:28204562
Versatile RNA tetra-U helix linking motif as a toolkit for nucleic acid nanotechnology. PMID:28064006
Advancement of the Emerging Field of RNA Nanotechnology. PMID:28045501
A Protocol for the Design of Protein and Peptide Nanostructure Self-Assemblies Exploiting Synthetic Amino Acids. PMID:27914060
Fabrication of RNA 3D Nanoprisms for Loading and Protection of Small RNAs and Model Drugs. PMID:27758001
A G-Rich Motif in the lncRNA Braveheart Interacts with a Zinc-Finger Transcription Factor to Specify the Cardiovascular Lineage. PMID:27618485
Cellular Delivery of RNA Nanoparticles. PMID:27509068
The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs. PMID:27125735
Thioflavin T as an efficient fluorescence sensor for selective recognition of RNA G-quadruplexes. PMID:27098781
Ring Catalog: A resource for designing self-assembling RNA nanostructures. PMID:27090005
CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking. PMID:26789998
RNA as a stable polymer to build controllable and defined nanostructures for material and biomedical applications. PMID:26770259
InterRNA: a database of base interactions in RNA structures. PMID:26553798
Directly lighting up RNA G-quadruplexes from test tubes to living human cells. PMID:26476445
GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies. PMID:26313379
DSSR: an integrated software tool for dissecting the spatial structure of RNA. PMID:26184874
RNABP COGEST: a resource for investigating functional RNAs. PMID:25776022
Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity. PMID:25217593
Enhancing immunomodulation on innate immunity by shape transition among RNA triangle, square and pentagon nanovehicles. PMID:25092921
Physicochemically tunable polyfunctionalized RNA square architecture with fluorogenic and ribozymatic properties. PMID:24971772
In silico design and enzymatic synthesis of functional RNA nanoparticles. PMID:24758371
RNA as a boiling-resistant anionic polymer material to build robust structures with defined shape and stoichiometry. PMID:24694194
Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges. PMID:24547945
Interconversion between parallel and antiparallel conformations of a 4H RNA junction in domain 3 of foot-and-mouth disease virus IRES captured by dynamics simulations. PMID:24461020
Stable RNA nanoparticles as potential new generation drugs for cancer therapy. PMID:24270010
Modeling the structure of RNA molecules with small-angle X-ray scattering data. PMID:24223750
RNA Bricks--a database of RNA 3D motifs and their interactions. PMID:24220091
Computational and experimental characterization of RNA cubic nanoscaffolds. PMID:24189588
RNA nanotechnology for computer design and in vivo computation. PMID:24000362
Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas. PMID:23970545
Fabrication of pRNA nanoparticles to deliver therapeutic RNAs and bioactive compounds into tumor cells. PMID:23928498
The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective. PMID:23695796
Ultrastable pRNA hexameric ring gearing hexameric phi29 DNA-packaging motor by revolving without rotating and coiling. PMID:23683853
Long-range architecture in a viral RNA genome. PMID:23614526
Fabrication of 14 different RNA nanoparticles for specific tumor targeting without accumulation in normal organs. PMID:23604636
Voronoia4RNA--a database of atomic packing densities of RNA structures and their complexes. PMID:23161674
Automated and fast building of three-dimensional RNA structures. PMID:23071898
Uniqueness, advantages, challenges, solutions, and perspectives in therapeutics applying RNA nanotechnology. PMID:22913595
Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure. PMID:22689763
Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine. PMID:22134126
RNA CoSSMos: Characterization of Secondary Structure Motifs--a searchable database of secondary structure motifs in RNA three-dimensional structures. PMID:22127861
Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots. PMID:22067111
Predicting coaxial helical stacking in RNA junctions. PMID:21917853
A boost for the emerging field of RNA nanotechnology. PMID:21604810
Additional roles of a peripheral loop-loop interaction in the Neurospora VS ribozyme. PMID:21507887
Assembly of multifunctional phi29 pRNA nanoparticles for specific delivery of siRNA and other therapeutics to targeted cells. PMID:21320601
Clustering to identify RNA conformations constrained by secondary structure. PMID:21317361
ModeRNA: a tool for comparative modeling of RNA 3D structure. PMID:21300639
Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes. PMID:21229999
Use of RNA structure flexibility data in nanostructure modeling. PMID:21163354
Understanding the effects of carbocyclic sugars constrained to north and south conformations on RNA nanodesign. PMID:21159533
The emerging field of RNA nanotechnology. PMID:21102465
Promoting RNA helical stacking via A-minor junctions. PMID:20876687
Structure of the three-way helical junction of the hepatitis C virus IRES element. PMID:20581129
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures. PMID:20459631
Modeling RNA loops using sequence homology and geometric constraints. PMID:20427516
Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling. PMID:19923230
Do conformational biases of simple helical junctions influence RNA folding stability and specificity? PMID:19850914
Tertiary motifs revealed in analyses of higher-order RNA junctions. PMID:19660472
Analysis of four-way junctions in RNA structures. PMID:19445952
Finding 3D motifs in ribosomal RNA structures. PMID:19158187
Informatic resources for identifying and annotating structural RNA motifs. PMID:18979204
Automated motif extraction and classification in RNA tertiary structures. PMID:18957493
Computational strategies for the automated design of RNA nanoscale structures from building blocks using NanoTiler. PMID:18838281
Analysis and classification of RNA tertiary structures. PMID:18824509
Unwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs. PMID:18555681
Tags:
Tags
More detailed information about this field from each metasource.
ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
nucleic acid structure
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
ribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: RNAJunction; RNAJunction: A Database of RNA Junction and Kissing loop Structure; DOI: https://doi.org/10.25504/FAIRsharing.zzgvrv; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
nucleic acid structure
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
rna structure rna sequence structure nucleic acid structure
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