Biocatalysed synthesis planning using data-driven learning.
PMID:35181654
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review.
PMID:34439912
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models.
PMID:33691770
Metabolic disassembler for understanding and predicting the biosynthetic units of natural products.
PMID:31870296
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities.
PMID:30192979
A review of computational tools for design and reconstruction of metabolic pathways.
PMID:29552648
A Method for Finding Metabolic Pathways Using Atomic Group Tracking.
PMID:28068354
Updates in Rhea - an expert curated resource of biochemical reactions.
PMID:27789701
Mapping the patent landscape of synthetic biology for fine chemical production pathways.
PMID:27489206
Reaction Decoder Tool (RDT): extracting features from chemical reactions.
PMID:27153692
Characterising Complex Enzyme Reaction Data.
PMID:26840640
Synthetic biology outside the cell: linking computational tools to cell-free systems.
PMID:25538941
Metabolic network discovery by top-down and bottom-up approaches and paths for reconciliation.
PMID:25520953
The InterPro protein families database: the classification resource after 15 years.
PMID:25428371
Integrated network analysis and effective tools in plant systems biology.
PMID:25408696
UniProt: a hub for protein information.
PMID:25348405
Updates in Rhea--a manually curated resource of biochemical reactions.
PMID:25332395
Text-mining-assisted biocuration workflows in Argo.
PMID:25037308
Profiling the orphan enzymes.
PMID:24906382
XTMS: pathway design in an eXTended metabolic space.
PMID:24792156
Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction.
PMID:24708835
The Reactome pathway knowledgebase.
PMID:24243840
Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.
PMID:23895341
Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways.
PMID:23580552
A systematic comparison of the MetaCyc and KEGG pathway databases.
PMID:23530693
Molecular tools for chemical biotechnology.
PMID:23528237
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.
PMID:23193269
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013.
PMID:23180789
The EBI enzyme portal.
PMID:23175605
Reconciliation of metabolites and biochemical reactions for metabolic networks.
PMID:23172809
The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.
PMID:22693442
A chemical specialty semantic network for the Unified Medical Language System.
PMID:22577759