GENI-ACT
GENI-ACT is a resource that allows the research community to collaboratively annotate bacterial genomes. Changes can be suggested to existing genomes and these alterations can be ported back to NCBI Genbank. GENI-ACT also has modules which can be used for educational purposes.
Description
More detailed information about this field from each metasource.
GENI-ACT is a resource that allows the research community to collaboratively annotate bacterial genomes. Changes can be suggested to existing genomes and these alterations can be ported back to NCBI Genbank. GENI-ACT also has modules which can be used for educational purposes.
metasource: Fairsharing.orgversion: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Webpage:
http://geni-act.org/Webpage
More detailed information about this field from each metasource.
http://geni-act.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Incorporating genomics and bioinformatics across the life sciences curriculum
PMID: 20711478
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xanthusbase: adapting wikipedia principles to a model organism database
PMID: 17090585
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xanthusbase after five years expands to become Openmods
PMID: 22116063
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
Incorporating genomics and bioinformatics across the life sciences curriculum
PMID: 20711478
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xanthusbase: adapting wikipedia principles to a model organism database
PMID: 17090585
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Xanthusbase after five years expands to become Openmods
PMID: 22116063
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
-
Incorporating genomics and bioinformatics across the life sciences curriculum
PubMed citations: 26.
26 articles citing: Incorporating genomics and bioinformatics across the life sciences curriculum
Bioinformatics Analysis for Identifying Pertinent Pathways and Genes in Sepsis. PMID:34760021
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO). PMID:34710081
Online Tools for Teaching Cancer Bioinformatics. PMID:34594439
Gene Annotation in High Schools: Successful Student Pipeline and Teacher Professional Development in Bioscience Using GENI-ACT. PMID:33584559
Microbiomes for All. PMID:33281791
Barriers to integration of bioinformatics into undergraduate life sciences education: A national study of US life sciences faculty uncover significant barriers to integrating bioinformatics into undergraduate instruction. PMID:31738797
Antibiotic resistant pathogen outbreak investigation: an interdisciplinary module to teach fundamentals of evolutionary biology. PMID:31073246
Bioinformatics core competencies for undergraduate life sciences education. PMID:29870542
Assessing an effective undergraduate module teaching applied bioinformatics to biology students. PMID:29324777
Quantitative Analysis of the Trends Exhibited by the Three Interdisciplinary Biological Sciences: Biophysics, Bioinformatics, and Systems Biology. PMID:26753026
Comparing the Impact of Course-Based and Apprentice-Based Research Experiences in a Life Science Laboratory Curriculum. PMID:26751568
Implementation and assessment of a yeast orphan gene research project: involving undergraduates in authentic research experiences and progressing our understanding of uncharacterized open reading frames. PMID:26460164
Phage on the stage. PMID:26442195
Authentic Research Experience and "Big Data" Analysis in the Classroom: Maize Response to Abiotic Stress. PMID:26163561
A central support system can facilitate implementation and sustainability of a Classroom-based Undergraduate Research Experience (CURE) in Genomics. PMID:25452493
Promoting inquiry-based teaching in laboratory courses: are we meeting the grade? PMID:25185228
Immersing undergraduate students into research on the metagenomics of the plant rhizosphere: a pedagogical strategy to engage civic-mindedness and retain undergraduates in STEM. PMID:24817868
A course-based research experience: how benefits change with increased investment in instructional time. PMID:24591510
Redefining authentic research experiences in introductory biology laboratories and barriers to their implementation. PMID:24591509
A Small-Group Activity Introducing the Use and Interpretation of BLAST. PMID:24358388
Building the next generation of quantitative biologists. PMID:24297567
Bioinformatics goes to school--new avenues for teaching contemporary biology. PMID:23785266
Using Bioinformatics to Develop and Test Hypotheses: E. coli-Specific Virulence Determinants. PMID:23653804
Integrating genomics research throughout the undergraduate curriculum: a collection of inquiry-based genomics lab modules. PMID:22949416
Teaching bioinformatics at the secondary school level. PMID:22046116
Teaching biology through statistics: application of statistical methods in genetics and zoology courses. PMID:21885822 -
Xanthusbase: adapting wikipedia principles to a model organism database
PubMed citations: 6.
6 articles citing: Xanthusbase: adapting wikipedia principles to a model organism database
Xanthusbase after five years expands to become Openmods. PMID:22116063
PDBWiki: added value through community annotation of the Protein Data Bank. PMID:20624717
Bacterial motility complexes require the actin-like protein, MreB and the Ras homologue, MglA. PMID:19959988
Isolation and characterization of a suppressor mutation that restores Myxococcus xanthus exopolysaccharide production. PMID:19684067
What we can learn about Escherichia coli through application of Gene Ontology. PMID:19576778
ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses. PMID:18541053 -
Xanthusbase after five years expands to become Openmods
PubMed citations: 1.
1 articles citing: Xanthusbase after five years expands to become Openmods
LiverWiki: a wiki-based database for human liver. PMID:29029599
Tags:
Tags
More detailed information about this field from each metasource.
crowdsourcing
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
teaching material
metasource: Fairsharing.org
version: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Tags
More detailed information about this field from each metasource.
crowdsourcing
metasource: Fairsharing.orgversion: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
teaching material
metasource: Fairsharing.orgversion: FAIRsharing.org: GENI-ACT; GENI-ACT; DOI: https://doi.org/10.25504/FAIRsharing.mhqkc7; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
crowdsourcing dna sequences genome genome annotation teaching material
Need help integrating and/or managing biomedical data?