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FAIRsharing.haj4pr; Last edited: Feb. 7, 2019, 11:13 a.m.; Last accessed: Jan 03 2022 7:12 p.m.

Other names: BPMAP

Names

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Binary Probe Map Format

metasource: Fairsharing.org
version: FAIRsharing.org: BPMAP; Binary Probe Map Format; DOI: https://doi.org/10.25504/FAIRsharing.haj4pr; Last edited: Feb. 7, 2019, 11:13 a.m.; Last accessed: Jan 03 2022 7:12 p.m.

BPMAP

The BPMAP file contains information relating to the design of the Affymetrix tiling arrays. The format of the BPMAP file is a binary file with data stored in big-endian format.

Description

More detailed information about this field from each metasource.

The BPMAP file contains information relating to the design of the Affymetrix tiling arrays. The format of the BPMAP file is a binary file with data stored in big-endian format.

Webpage:

http://www.affymetrix.com/support/developer/powertools/changelog/gcos-agcc/bpmap.html

Webpage

More detailed information about this field from each metasource.

http://www.affymetrix.com/support/developer/powertools/changelog/gcos-agcc/bpmap.html

Tags:

Tags
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gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: BPMAP; Binary Probe Map Format; DOI: https://doi.org/10.25504/FAIRsharing.haj4pr; Last edited: Feb. 7, 2019, 11:13 a.m.; Last accessed: Jan 03 2022 7:12 p.m.

gene expression

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Affymetrix Raw Intensity Format

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ICM binary file Format

ICM binary file Format is used in databases pertaining to structural biology and protein families. This format can be used for the graphical representation of RNA, DNA, and proteins interactions.

Binary Alignment Map Format

BAM is the compressed binary version of the Sequence Alignment/Map (SAM) format, a compact and indexable representation of nucleotide sequence alignments. Many next-generation sequencing and analysis ...

Binary sequence information Format

A .2bit file stores multiple DNA sequences (up to 4 Gb total) in a compact randomly-accessible format. The file contains masking information as well as the DNA itself. The DNA sequence is represented ...

Protein InFormation Resource Format

This PIR Database File Structure and Format Specification describes the files comprising the PIR-International Protein Sequence Database and the format of each. The format has been enhanced significan ...

NCBI Probe Database

The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe e ...

Affymetrix NetAffx Analysis Center

Allows correlation of GeneChip array results with array design and annotation information; provides access to array content information, including probe sequences and gene annotations; free registrati ...

NetAffx

Public Affymetrix probesets and annotations

Standard Flowgram Format

Standard flowgram format (SFF) is a binary file format used to encode results of pyrosequencing from the 454 Life Sciences platform for high-throughput sequencing. SFF files can be viewed, edited and ...

Connectivity Table file format

A CT (Connectivity Table) file contains secondary structure information for a RNA sequence.

Gene Ontology (GO) Gene Association File Format 2.1

Ontology-based annotation data can be submitted to the Gene Ontology Consortium and other projects (e.g. the Planteome project) in the Gene Association Format 2.1 (GAF 2.1). The annotation flat file f ...

Pre-Clustering File Format

The PCL file format is a tab delimited file format that describes an expression dataset.

Nimblegen Design File Format

NimbleGen Design File Format is a standard data file format. NimbleGen is now a trademark of Roche.

nucleotide inFormation binary Format

The .nib format pre-dates the .2bit format and is less compact. It describes a DNA sequence by packing two bases into each byte.

Gene Prediction File Format

Gene Prediction File Format (genePred) is a table format commonly used for gene prediction tracks in the Genome Browser. Variations of genePred include standard format, extended format and a format wh ...

PLANdbAffy

Probe-Level Annotation Database for Affymetrix microarrays

NIfTI-1 Data Format

The Neuroimaging Informatics Technology Initiative (nifti) file format was envisioned about a decade ago as a replacement to the then widespread, yet problematic, analyze 7.5 file format. The main pro ...

ENA Sequence Flat File Format

ENA Sequence Flat File Format is a standardised plain text format for nucleotide sequences. This format was previously called the EMBL Sequence Flat File Format.

Analyze 7.5 File Format

Analyze 7.5 can store voxel-based volumes and consists of two files: One file with the actual data in a binary format with the filename extension .img and another file (header with filename extension ...

Gene Transfer Format

The Gene transfer format (GTF) is a file format used to hold information about gene structure. It is a tab-delimited text format based on the general feature format (GFF), but contains some additional ...

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine