NCBI Probe Database
Names
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NCBI Probe Database
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ProbeDB
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
NCBI Probe
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
Probe
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
NCBI dbProbe
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:55.506009
ncbi_dbprobe
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:55.506009
Names
More detailed information about this field from each metasource.
NCBI Probe Database
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ProbeDB
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
NCBI Probe
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
Probe
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
NCBI dbProbe
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:55.506009
ncbi_dbprobe
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:55.506009
Other names: ProbeDB, NCBI Probe, Probe, NCBI dbProbe, ncbi_dbprobe
Names
More detailed information about this field from each metasource.
NCBI Probe Database
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
ProbeDB
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
NCBI Probe
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
Probe
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
NCBI dbProbe
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:55.506009
ncbi_dbprobe
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:55.506009
This source may no longer be available. No known URL could be resolved successfully.
The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.
Description
More detailed information about this field from each metasource.
The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
>>>!!! NCBI has retired the Probe Database !!!<<< Probe database provides a public registry of nucleic acid reagents as well as information on reagent distributors, sequence similarities and probe effectiveness. Database users have access to applications of gene expression, gene silencing and mapping, as well as reagent variation analysis and projects based on probe-generated data. The Probe database is constantly updated.
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
Public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:55.506009
Webpage:
http://www.ncbi.nlm.nih.gov/probeWebpage
More detailed information about this field from each metasource.
http://www.ncbi.nlm.nih.gov/probe
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:55.506009
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
other
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
Licence URL
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http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://www.ncbi.nlm.nih.gov/About/disclaimer.html
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
Database resources of the National Center for Biotechnology Information
PMID: 23193264
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkq1172
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:55.506009
Publications
More detailed information about this field from each metasource.
Database resources of the National Center for Biotechnology Information
PMID: 23193264
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkq1172
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:55.506009
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Database resources of the National Center for Biotechnology Information
PubMed citations: 239.
239 articles citing: Database resources of the National Center for Biotechnology Information
Natural Aedes-Borne Virus Infection Detected in Male Adult Aedes aegypti (Diptera: Culicidae) Collected From Urban Settings in Mérida, Yucatán, México. PMID:35535688
A Web Server for GPCR-GPCR Interaction Pair Prediction. PMID:35399947
Acetate Degradation at Low pH by the Moderately Acidophilic Sulfate Reducer Acididesulfobacillus acetoxydans gen. nov. sp. nov. PMID:35391737
ETV2 regulates PARP-1 binding protein to induce ER stress-mediated death in tuberin-deficient cells. PMID:35181635
Hyperbaric Oxygen Therapy after Mid-Cervical Spinal Contusion Injury. PMID:35152735
Cov19VaxKB: A Web-based Integrative COVID-19 Vaccine Knowledge Base. PMID:34981039
CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice. PMID:34403447
Insertion of an endogenous Jaagsiekte sheep retrovirus element into the BCO2 - gene abolishes its function and leads to yellow discoloration of adipose tissue in Norwegian Spælsau (Ovis aries). PMID:34193038
Targeted Genome Mining Reveals the Biosynthetic Gene Clusters of Natural Product CYP51 Inhibitors. PMID:33857369
FoxP1 is a transcriptional repressor associated with cancer cachexia that induces skeletal muscle wasting and weakness. PMID:33527776
A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates. PMID:33436653
CHD2-Related CNS Pathologies. PMID:33435571
Pan-genome analysis and ancestral state reconstruction of class halobacteria: probability of a new super-order. PMID:33273480
DNAmoreDB, a database of DNAzymes. PMID:33053178
The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans. PMID:33037220
Exploring metal availability in the natural niche of Streptococcus pneumoniae to discover potential vaccine antigens. PMID:33017224
High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite. PMID:33001992
Text mining for modeling of protein complexes enhanced by machine learning. PMID:32960948
Draft genome sequence of multi-resistant Salmonella enterica subsp. enterica serovar Rissen strain 19CS0416 isolated from Vietnam reveals mcr-1 plasmid mediated resistance to colistin already in 2013. PMID:32817764
Exploiting phage receptor binding proteins to enable endolysins to kill Gram-negative bacteria. PMID:32694655
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis. PMID:32165660
Data mining of metagenomes to find novel enzymes: a non-computationally intensive method. PMID:32099729
Manganese (II) removal from aqueous solutions by Cladosporium halotolerans and Hypocrea jecorina. PMID:32071895
Plasmid-mediated metronidazole resistance in Clostridioides difficile. PMID:32001686
Transcriptional analysis of THP-1 cells infected with Leishmania infantum indicates no activation of the inflammasome platform. PMID:31961876
Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element. PMID:31906858
A network-based approach to uncover microRNA-mediated disease comorbidities and potential pathobiological implications. PMID:31754458
CRISPR-Cas influences the acquisition of antibiotic resistance in Klebsiella pneumoniae. PMID:31747398
An in silico survey of Clostridioides difficile extrachromosomal elements . PMID:31526450
A Kinetic Map of the Homomeric Voltage-Gated Potassium Channel (Kv) Family. PMID:31481875
A Novel Computational Model for Predicting microRNA-Disease Associations Based on Heterogeneous Graph Convolutional Networks. PMID:31455028
Complete genome and plasmid sequence of a novel Bacillus sp. BD59S, a parasporal protein synthesizing bacterium. PMID:31406640
Structural and Functional Characterization of YdjI, an Aldolase of Unknown Specificity in Escherichia coli K12. PMID:31322866
Molecular Diagnostics of Banana Fusarium Wilt Targeting Secreted-in-Xylem Genes. PMID:31214206
Gene expression patterns in synchronized islet populations. PMID:31050588
Genetic Variations and Precision Medicine. PMID:31019429
A robust data-driven genomic signature for idiopathic pulmonary fibrosis with applications for translational model selection. PMID:30998768
Advancing Computational Toxicology in the Big Data Era by Artificial Intelligence: Data-Driven and Mechanism-Driven Modeling for Chemical Toxicity. PMID:30907586
When one phenotype is not enough: divergent evolutionary trajectories govern venom variation in a widespread rattlesnake species. PMID:30862287
Botanophila flies, vectors of Epichloë fungal spores, are infected by Wolbachia. PMID:30834147
Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens. PMID:30828342
Protein analysis reveals differential accumulation of late embryogenesis abundant and storage proteins in seeds of wild and cultivated amaranth species. PMID:30727945
Construction of a cDNA library and preliminary analysis of the expressed sequence tags of the earthworm Eisenia fetida (Savigny, 1826). PMID:30720084
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle. PMID:30661755
High throughput screening against pantothenate synthetase identifies amide inhibitors against Mycobacterium tuberculosis and Staphylococcus aureus. PMID:30607322
Comparative morphology and evolution of the cnidosac in Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia). PMID:30473719
Mild Traumatic Brain Injury in Mice Beneficially Alters Lung NK1R and Structural Protein Expression to Enhance Survival after Pseudomonas aeruginosa Infection. PMID:30472211
Network Pharmacology to Unveil the Biological Basis of Health-Strengthening Herbal Medicine in Cancer Treatment. PMID:30469422
Exploring NS3/4A, NS5A and NS5B proteins to design conserved subunit multi-epitope vaccine against HCV utilizing immunoinformatics approaches. PMID:30382118
The Promise and Challenge of Digital Biology. PMID:30338132
Alcohol use and burden for 195 countries and territories, 1990-2016: a systematic analysis for the Global Burden of Disease Study 2016. PMID:30146330
Murine host response to Neisseria gonorrhoeae upper genital tract infection reveals a common transcriptional signature, plus distinct inflammatory responses that vary between reproductive cycle phases. PMID:30134832
Functional annotation and distribution overview of RNA families in 27 Streptococcus agalactiae genomes. PMID:30055586
Two birds, one stone: hesperetin alleviates chemotherapy-induced diarrhea and potentiates tumor inhibition. PMID:29963254
Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers? PMID:29941426
Repurposing sertraline sensitizes non-small cell lung cancer cells to erlotinib by inducing autophagy. PMID:29875309
The aquatic animals' transcriptome resource for comparative functional analysis. PMID:29764375
Complete Genome Sequences of Two Bacillus pumilus Strains from Cuatrociénegas, Coahuila, Mexico. PMID:29700165
Redefinition and Unification of the SXT/R391 Family of Integrative and Conjugative Elements. PMID:29654185
Two novel deep-sea sediment metagenome-derived esterases: residue 199 is the determinant of substrate specificity and preference. PMID:29382330
InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk. PMID:29363423
Pharmacogenetic Variation in Over 100 Genes in Patients Receiving Acenocumarol. PMID:29218011
Morphology, Carbohydrate Distribution, Gene Expression, and Enzymatic Activities Related to Cell Wall Hydrolysis in Four Barley Varieties during Simulated Malting. PMID:29163597
Complementation of a metK-deficient E. coli strain with heterologous AdoMet synthetase genes. PMID:29111970
TCMID 2.0: a comprehensive resource for TCM. PMID:29106634
FnCpf1: a novel and efficient genome editing tool for Saccharomyces cerevisiae. PMID:29106617
Genome-wide discovery of long intergenic noncoding RNAs and their epigenetic signatures in the rat. PMID:29093522
Genome-Based Analyses of Six Hexacorallian Species Reject the "Naked Coral" Hypothesis. PMID:29048525
Benzene and Naphthalene Degrading Bacterial Communities in an Oil Sands Tailings Pond. PMID:29033909
Novel features and enhancements in BioBin, a tool for the biologically inspired binning and association analysis of rare variants. PMID:28968757
Orthologue chemical space and its influence on target prediction. PMID:28961699
BioFuelDB: a database and prediction server of enzymes involved in biofuels production. PMID:28875065
Molecular and functional characterization of two isoforms of chalcone synthase and their expression analysis in relation to flavonoid constituents in Grewia asiatica L. PMID:28662128
Improving data workflow systems with cloud services and use of open data for bioinformatics research. PMID:28419324
Assembly and comparison of two closely related Brassica napus genomes. PMID:28403535
Estimating the selective effects of heterozygous protein-truncating variants from human exome data. PMID:28369035
Supra-operonic clusters of functionally related genes (SOCs) are a source of horizontal gene co-transfers. PMID:28067311
Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow. PMID:28025336
VaProS: a database-integration approach for protein/genome information retrieval. PMID:28012137
MEGARes: an antimicrobial resistance database for high throughput sequencing. PMID:27899569
HPV16 integration probably contributes to cervical oncogenesis through interrupting tumor suppressor genes and inducing chromosome instability. PMID:27884161
Genome scale identification, structural analysis, and classification of periplasmic binding proteins from Mycobacterium tuberculosis. PMID:27858159
Microdiversification of a Pelagic Polynucleobacter Species Is Mainly Driven by Acquisition of Genomic Islands from a Partially Interspecific Gene Pool. PMID:27836842
TRIg: a robust alignment pipeline for non-regular T-cell receptor and immunoglobulin sequences. PMID:27782801
Complete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial Genome. PMID:27736909
Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic. PMID:27685447
MetaPhinder-Identifying Bacteriophage Sequences in Metagenomic Data Sets. PMID:27684958
Transcriptome assessment of the Pompe (Gaa-/-) mouse spinal cord indicates widespread neuropathology. PMID:27614205
Investigating cellular network heterogeneity and modularity in cancer: a network entropy and unbalanced motif approach. PMID:27585651
A biologically informed method for detecting rare variant associations. PMID:27582876
The complete genome sequence of the rumen methanogen Methanobrevibacter millerae SM9. PMID:27536339
Susceptibility to Childhood Pneumonia: A Genome-Wide Analysis. PMID:27508494
Revealing disease-associated pathways by network integration of untargeted metabolomics. PMID:27479327
Bioinformatics resources for pollen. PMID:27271281
CSF1R mosaicism in a family with hereditary diffuse leukoencephalopathy with spheroids. PMID:27190017
Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom. PMID:27148206
Trisubstituted-Imidazoles Induce Apoptosis in Human Breast Cancer Cells by Targeting the Oncogenic PI3K/Akt/mTOR Signaling Pathway. PMID:27097161
MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. PMID:27076900
A network-based drug repositioning infrastructure for precision cancer medicine through targeting significantly mutated genes in the human cancer genomes. PMID:27026610
Izumo1 and Juno: the evolutionary origins and coevolution of essential sperm-egg binding partners. PMID:27019721
MTDH genetic variants in colorectal cancer patients. PMID:26983693
Microbiome and Biocatalytic Bacteria in Monkey Cup (Nepenthes Pitcher) Digestive Fluid. PMID:26817720
pATsi: Paralogs and Singleton Genes from Arabidopsis thaliana. PMID:26792975
KNOWLEDGE DRIVEN BINNING AND PHEWAS ANALYSIS IN MARSHFIELD PERSONALIZED MEDICINE RESEARCH PROJECT USING BIOBIN. PMID:26776191
Systematic Prioritization of Druggable Mutations in ∼5000 Genomes Across 16 Cancer Types Using a Structural Genomics-based Approach. PMID:26657081
Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes. PMID:26645365
AIP1 is a novel Agenet/Tudor domain protein from Arabidopsis that interacts with regulators of DNA replication, transcription and chromatin remodeling. PMID:26538092
Functionally conserved enhancers with divergent sequences in distant vertebrates. PMID:26519295
Target prediction utilising negative bioactivity data covering large chemical space. PMID:26500705
Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation. PMID:26473045
Connectivity Homology Enables Inter-Species Network Models of Synthetic Lethality. PMID:26451775
Searching molecular structure databases with tandem mass spectra using CSI:FingerID. PMID:26392543
MetaRNA-Seq: An Interactive Tool to Browse and Annotate Metadata from RNA-Seq Studies. PMID:26380270
Exploring the cellular basis of human disease through a large-scale mapping of deleterious genes to cell types. PMID:26330083
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts. PMID:26286194
Optimal Threshold Determination for Interpreting Semantic Similarity and Particularity: Application to the Comparison of Gene Sets and Metabolic Pathways Using GO and ChEBI. PMID:26230274
RNA editing differently affects protein-coding genes in D. melanogaster and H. sapiens. PMID:26169954
Regulation rewiring analysis reveals mutual regulation between STAT1 and miR-155-5p in tumor immunosurveillance in seven major cancers. PMID:26156524
Specific Inflammatory Stimuli Lead to Distinct Platelet Responses in Mice and Humans. PMID:26148065
Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules. PMID:26147120
Computational approaches for the classification of seed storage proteins. PMID:26139889
Characterization of the Maize Chitinase Genes and Their Effect on Aspergillus flavus and Aflatoxin Accumulation Resistance. PMID:26090679
Structural Analysis of Der p 1-Antibody Complexes and Comparison with Complexes of Proteins or Peptides with Monoclonal Antibodies. PMID:26026055
Spatial genomic heterogeneity within localized, multifocal prostate cancer. PMID:26005866
ProteINSIDE to Easily Investigate Proteomics Data from Ruminants: Application to Mine Proteome of Adipose and Muscle Tissues in Bovine Foetuses. PMID:26000831
Community challenges in biomedical text mining over 10 years: success, failure and the future. PMID:25935162
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts. PMID:25887563
ALDB: a domestic-animal long noncoding RNA database. PMID:25853886
Factors that affect transfer of the IncI1 β-lactam resistance plasmid pESBL-283 between E. coli strains. PMID:25830294
Antithrombin III deficiency in Indian patients with deep vein thrombosis: identification of first India based AT variants including a novel point mutation (T280A) that leads to aggregation. PMID:25811371
Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes. PMID:25785303
The complete genome sequence of the rumen methanogen Methanobacterium formicicum BRM9. PMID:25780506
Innate immune response to Streptococcus pyogenes depends on the combined activation of TLR13 and TLR2. PMID:25756897
Whole-Genome Analysis of Quorum-Sensing Burkholderia sp. Strain A9. PMID:25745000
Gateways to the FANTOM5 promoter level mammalian expression atlas. PMID:25723102
Extending reference assembly models. PMID:25651527
Effects of the diet on the microbiota of the red palm weevil (Coleoptera: Dryophthoridae). PMID:25635833
FXR antagonism of NSAIDs contributes to drug-induced liver injury identified by systems pharmacology approach. PMID:25631039
Genome sequence of Coxiella burnetii strain Namibia. PMID:25593636
A Novel Mutation in the ROGDI Gene in a Patient with Kohlschütter-Tönz Syndrome. PMID:25565929
A tetrahelical DNA fold adopted by tandem repeats of alternating GGG and GCG tracts. PMID:25500730
Comparison of multiple displacement amplification (MDA) and multiple annealing and looping-based amplification cycles (MALBAC) in single-cell sequencing. PMID:25485707
Global genome comparative analysis reveals insights of resistome and life-style adaptation of Pseudomonas putida strain T2-2 in oral cavity. PMID:25436236
HIV-1, human interaction database: current status and new features. PMID:25378338
A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation. PMID:25369365
Evaluation of variant identification methods for whole genome sequencing data in dairy cattle. PMID:25361890
Census-based rapid and accurate metagenome taxonomic profiling. PMID:25336203
Inhalation of rod-like carbon nanotubes causes unconventional allergic airway inflammation. PMID:25318534
Genome re-sequencing of semi-wild soybean reveals a complex Soja population structure and deep introgression. PMID:25265539
Big data in chemical toxicity research: the use of high-throughput screening assays to identify potential toxicants. PMID:25195622
OptiType: precision HLA typing from next-generation sequencing data. PMID:25143287
Walking the interactome for candidate prioritization in exome sequencing studies of Mendelian diseases. PMID:25078397
Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. PMID:25017103
Quantitative network mapping of the human kinome interactome reveals new clues for rational kinase inhibitor discovery and individualized cancer therapy. PMID:25003367
The UCSC Genome Browser: What Every Molecular Biologist Should Know. PMID:24984850
CANDO and the infinite drug discovery frontier. PMID:24980786
Molecular diagnosis of long QT syndrome at 10 days of life by rapid whole genome sequencing. PMID:24973560
Metagenomic analysis reveals presence of Treponema denticola in a tissue biopsy of the Iceman. PMID:24941044
Protein conservation and variation suggest mechanisms of cell type-specific modulation of signaling pathways. PMID:24922536
Studying tumorigenesis through network evolution and somatic mutational perturbations in the cancer interactome. PMID:24881052
SuperPred: update on drug classification and target prediction. PMID:24878925
Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade. PMID:24858085
Handling temperature bursts reaching 464°C: different microbial strategies in the sisters peak hydrothermal chimney. PMID:24837379
Classification of intrinsically disordered regions and proteins. PMID:24773235
Absence/presence calling in microarray-based CGH experiments with non-model organisms. PMID:24771343
A Framework for Content-based Retrieval of EEG with Applications to Neuroscience and Beyond. PMID:24770451
Deciphering key features in protein structures with the new ENDscript server. PMID:24753421
SysPTM 2.0: an updated systematic resource for post-translational modification. PMID:24705204
A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE). PMID:24667251
Resources for functional genomics studies in Drosophila melanogaster. PMID:24653003
Validation and genotyping of multiple human polymorphic inversions mediated by inverted repeats reveals a high degree of recurrence. PMID:24651690
Immunomic, genomic and transcriptomic characterization of CT26 colorectal carcinoma. PMID:24621249
Drug2Gene: an exhaustive resource to explore effectively the drug-target relation network. PMID:24618344
Genome-wide association study of urinary albumin excretion rate in patients with type 1 diabetes. PMID:24595857
Estimating differential expression from multiple indicators. PMID:24586062
OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly. PMID:24564959
Structure-critical distribution of aromatic residues in the fibronectin type III protein family. PMID:24563228
DFLAT: functional annotation for human development. PMID:24507166
Improving mRNA 5' coding sequence determination in the mouse genome. PMID:24504701
Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces. PMID:24478124
Genome-scale analysis of demographic history and adaptive selection. PMID:24474201
Pathway analysis for drug repositioning based on public database mining. PMID:24460210
bex-db: Bioinformatics workbench for comprehensive analysis of barley-expressed genes. PMID:24399916
Variants of the PPARD gene and their clinicopathological significance in colorectal cancer. PMID:24391853
New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily. PMID:24383880
Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases. PMID:24363285
Evaluating the impact of different sequence databases on metaproteome analysis: insights from a lab-assembled microbial mixture. PMID:24349410
Sequencing the transcriptome of milk production: milk trumps mammary tissue. PMID:24330573
BacMet: antibacterial biocide and metal resistance genes database. PMID:24304895
Pfam: the protein families database. PMID:24288371
Ribosomal Database Project: data and tools for high throughput rRNA analysis. PMID:24288368
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools. PMID:24285306
The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. PMID:24285300
Rates of evolution of hominoid seminal proteins are correlated with function and expression, rather than mating system. PMID:24281413
Lynx: a database and knowledge extraction engine for integrative medicine. PMID:24270788
The UCSC Genome Browser database: 2014 update. PMID:24270787
Therapeutic target database update 2014: a resource for targeted therapeutics. PMID:24265219
RefSeq: an update on mammalian reference sequences. PMID:24259432
Updates on the web-based VIOLIN vaccine database and analysis system. PMID:24259431
MultitaskProtDB: a database of multitasking proteins. PMID:24253302
InvFEST, a database integrating information of polymorphic inversions in the human genome. PMID:24253300
DNA hypermethylation and DNA hypomethylation is present at different loci in chronic kidney disease. PMID:24253112
Linking transcriptional changes over time in stimulated dendritic cells to identify gene networks activated during the innate immune response. PMID:24244133
Mouse phenome database. PMID:24243846
ClinVar: public archive of relationships among sequence variation and human phenotype. PMID:24234437
PATRIC, the bacterial bioinformatics database and analysis resource. PMID:24225323
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates. PMID:24225321
NPInter v2.0: an updated database of ncRNA interactions. PMID:24217916
GenBank. PMID:24217914
AgeFactDB--the JenAge Ageing Factor Database--towards data integration in ageing research. PMID:24217911
Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis. PMID:24214996
DrugBank 4.0: shedding new light on drug metabolism. PMID:24203711
CottonGen: a genomics, genetics and breeding database for cotton research. PMID:24203703
TreeFam v9: a new website, more species and orthology-on-the-fly. PMID:24194607
HypoxiaDB: a database of hypoxia-regulated proteins. PMID:24178989
The Database of Genomic Variants: a curated collection of structural variation in the human genome. PMID:24174537
GeneProf data: a resource of curated, integrated and reusable high-throughput genomics experiments. PMID:24174536
SIMAP--the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage. PMID:24165881
The mouse Gene Expression Database (GXD): 2014 update. PMID:24163257
uORFdb--a comprehensive literature database on eukaryotic uORF biology. PMID:24163100
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. PMID:24157837
The ability of bifidobacteria to degrade arabinoxylan oligosaccharide constituents and derived oligosaccharides is strain dependent. PMID:24141124
Ketone bodies as signaling metabolites. PMID:24140022
HoPaCI-DB: host-Pseudomonas and Coxiella interaction database. PMID:24137008
Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota. PMID:24124574
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases. PMID:24038354
Deep sequencing reveals increased DNA methylation in chronic rat epilepsy. PMID:24005891
The Complete Genome Sequence of Methanobrevibacter sp. AbM4. PMID:23991254
The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus. PMID:23985341
The presence, role and clinical use of spermatozoal RNAs. PMID:23856356
Using an isolated rat kidney model to identify kidney origin proteins in urine. PMID:23825584
MHCcluster, a method for functional clustering of MHC molecules. PMID:23775223
webPDBinder: a server for the identification of ligand binding sites on protein structures. PMID:23737450
aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. PMID:23677614
Genome-wide identification of bone metastasis-related microRNAs in lung adenocarcinoma by high-throughput sequencing. PMID:23593434
RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. PMID:23547897
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection. PMID:23203983
GenBank. PMID:23193287 - http://dx.doi.org/10.1093/nar/gkq1172
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More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleotide
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
oligonucleotide probe annotation
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
polymerase chain reaction primers
metasource: Fairsharing.org
version: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
dna data banks
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
gene expression
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
gene mapping
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
gene silencing
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
nucleic acid probes
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
biomedical reserach
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
human genome
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
influenza virus
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
mouse genome
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
primer-blast
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
reference sequences
metasource: re3data.org
version: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
laboratory information management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:55.506009
Tags
More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleotide
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
oligonucleotide probe annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
polymerase chain reaction primers
metasource: Fairsharing.orgversion: FAIRsharing.org: ProbeDB; NCBI Probe Database; DOI: https://doi.org/10.25504/FAIRsharing.64bk6p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
dna data banks
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
gene expression
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
gene mapping
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
gene silencing
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
nucleic acid probes
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
biomedical reserach
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
human genome
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
influenza virus
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
mouse genome
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
primer-blast
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
reference sequences
metasource: re3data.orgversion: re3data.org: NCBI Probe; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3D041 last accessed: 2022-11-04
laboratory information management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:26:55.506009
gene expression polymorphism nucleotide oligonucleotide probe annotation polymerase chain reaction primers dna data banks gene expression gene mapping gene silencing nucleic acid probes biomedical reserach human genome influenza virus mouse genome primer-blast reference sequences laboratory information management
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