dbCAN-seq

Factorbook

Human transcription factor binding data from ChIP-seq

ChIP-Seq Transcription Factor Data

We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors i ...

FORK-seq

FORK-seq is a replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

CoV-Seq

CoV-Seq is a suite of tools and datasets for analysis and visualization of genomes of SARS-CoV-2, the virus that causes COVID-19. Sequences are collected from four major repositories: GISAID, NCBI, EM ...

Cancer RNA-Seq Nexus

CistromeDB

ChIP-Seq and DNase-Seq data in human and mouse

GWIPS-viz

GWIPS-viz is a freely available on-line genome browser which provides pre-populated ribosome profiling (Ribo-seq) and mRNA-seq tracks from published studies.

PSRN

Plant stress RNA-Seq nexus (PSRN) - stress-specific transcriptome database in plant cells.

ChIPBase

ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-codi ...

lnc2cancer

Lnc2Cancer 3.0 includes comprehensive data on experimentally supported long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) associated with human cancers. In addition, web tools for analyzing l ...

CODEX

ChIP-Seq, RNA-Seq and DNase-Seq data for haematopoietic and embryonic stem cells

StarBASE

microRNA-mRNA interaction maps

PlanExp

PlanExp is an intuitive integration of complex RNA-seq datasets with planarian omics resources.

expVIP

Customizable RNA-seq Data Analysis and Visualization Platform.

GeneMarkeR

A Database and User Interface for scRNA-seq Marker Genes.

PSDX

A Comprehensive Multi-Omics Association Database of Secondary Growth in Response to Stress in Populus trichocarpa.

BaRTv1.0

Barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.

ChIPSummitDB

ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.

TarDB

TarDB is a database for conserved miRNA targets, degradome supported miRNA targets and miRNA-triggered phasiRNAs in plants. TarDB is a plant miRNA target repository, which is based on cross-species co ...