PlanExp

TissueNexus

A database of human tissue functional gene networks built with a large compendium of curated RNA-seq data.

SCDevDB

A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes. PRESDB:pig RNA Editing database

CellO

CellO (Cell Ontology-based classification) is a Python package for performing cell type classification of human RNA-seq data. CellO makes hierarchical predictions against the Cell Ontology. These clas ...

PltRNAdb

Plant transfer RNA database.

ColorCells

ColorCells is a database of expression, classification and functions of lncRNAs in single cells. Single cell RNA sequencing (scRNA-Seq) technology has revealed significant differences in gene expressi ...

expVIP

Customizable RNA-seq Data Analysis and Visualization Platform.

GRNdb

TF-target relationsips inferred from single cell and bulk RNA-seq datasets

BaRTv1.0

Barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.

Planarian Phenotype Ontology

Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea. Many of the phenotypes were seen durning RNAi experiments.

Expression Atlas

The Expression Atlas is a free resource providing information on gene expression patterns under different biological conditions in a variety of species. Gene expression data is re-analysed in-house to ...

Extracellular RNA Atlas

The exRNA Atlas is the data and metadata repository of the Extracellular RNA Communication Consortium (ERCC), an NIH Common Fund initiative to learn more about exRNAs in a variety of different context ...

Cancer RNA-Seq Nexus

EVAtlas

Database for ncRNA expression in human extracellular vesicles.

BacHBerryEXP

A gene Expression Browser for RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics.

AtFusionDB

Database of fusion transcripts in Arabidopsis thaliana.

snoDB

an interactive database of human snoRNA sequences, abundance and interactions. Tool to visualize expression data in heatmaps. Column Options Reset Filters Refresh Table. snoTHAW is a tool to help v ...

Sex-Associated Gene Database

Many animal species present sex differences. Sex-associated genes (SAGs), which have female-biased or male-biased expression, have major influences on the remarkable sex differences in important trait ...

PSRN

Plant stress RNA-Seq nexus (PSRN) - stress-specific transcriptome database in plant cells.

DriverDBv2

DriverDB, a database that incorporates >9500 cancer-related RNA-seq datasets and >7000 more exome-seq datasets, in addition to annotation databases and published bioinformatics algorithms dedicated to ...