Prediction and Experimental Validation of a New Salinity-Responsive Cis-Regulatory Element (CRE) in a Tilapia Cell Line.
PMID:35743818
Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data.
PMID:35549345
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics.
PMID:35354825
Cancer proteogenomics: current impact and future prospects.
PMID:35236940
Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline.
PMID:34919405
Does Data-Independent Acquisition Data Contain Hidden Gems? A Case Study Related to Alzheimer's Disease.
PMID:34818016
Rapid and sensitive detection of SARS-CoV-2 infection using quantitative peptide enrichment LC-MS analysis.
PMID:34747696
Small volume retinol binding protein measurement by liquid chromatography-tandem mass spectrometry.
PMID:34678307
Targeted mass spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP Kinase, and AKT signaling.
PMID:34671754
Interactome Networks of FOSL1 and FOSL2 in Human Th17 Cells.
PMID:34604665
SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients.
PMID:34570216
Construction of à la carte QconCAT protein standards for multiplexed quantification of user-specified target proteins.
PMID:34496840
Proteomic profiling dataset of chemical perturbations in multiple biological backgrounds.
PMID:34433823
Inflammation protein quantification by multiple reaction monitoring mass spectrometry in lipopolysaccharide-stimulated THP-1 cells.
PMID:34270816
Improved SILAC Quantification with Data-Independent Acquisition to Investigate Bortezomib-Induced Protein Degradation.
PMID:33764077
Personalized Profiling Reveals Donor- and Lactation-Specific Trends in the Human Milk Proteome and Peptidome.
PMID:33693758
An Update on MRMAssayDB: A Comprehensive Resource for Targeted Proteomics Assays in the Community.
PMID:33683131
From chemoproteomic-detected amino acids to genomic coordinates: insights into precise multi-omic data integration.
PMID:33599394
Phosphoproteomics reveals novel modes of function and inter-relationships among PIKKs in response to genotoxic stress.
PMID:33215756
Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration.
PMID:33154995
Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale.
PMID:33097726
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.
PMID:32929271
An osmolality/salinity-responsive enhancer 1 (OSRE1) in intron 1 promotes salinity induction of tilapia glutamine synthetase.
PMID:32694739
Audit logs to enforce document integrity in Skyline and Panorama.
PMID:32467974
Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C.
PMID:32444788
Metabolite Profiling Reveals Predictive Biomarkers and the Absence of β-Methyl Amino-l-alanine in Plasma from Individuals Diagnosed with Amyotrophic Lateral Sclerosis.
PMID:32418425
LipidCreator workbench to probe the lipidomic landscape.
PMID:32345972
Deciphering MET-dependent modulation of global cellular responses to DNA damage by quantitative phosphoproteomics.
PMID:32336009
Quantitative Longitudinal Inventory of the N-Glycoproteome of Human Milk from a Single Donor Reveals the Highly Variable Repertoire and Dynamic Site-Specific Changes.
PMID:32125861
Matrix-Matched Calibration Curves for Assessing Analytical Figures of Merit in Quantitative Proteomics.
PMID:32037841
Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics.
PMID:31984744
A proteomic atlas of senescence-associated secretomes for aging biomarker development.
PMID:31945054
A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer.
PMID:31289117
ARIH2 Is a Vif-Dependent Regulator of CUL5-Mediated APOBEC3G Degradation in HIV Infection.
PMID:31253590
Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages.
PMID:31208443
Toward a Consensus on Applying Quantitative Liquid Chromatography-Tandem Mass Spectrometry Proteomics in Translational Pharmacology Research: A White Paper.
PMID:31175671
Quantitative assay of targeted proteome in tomato trichome glandular cells using a large-scale selected reaction monitoring strategy.
PMID:31049073
Light-dependent N-terminal phosphorylation of LHCSR3 and LHCB4 are interlinked in Chlamydomonas reinhardtii.
PMID:31033075
Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates.
PMID:30858878
A rapid methods development workflow for high-throughput quantitative proteomic applications.
PMID:30763335
Tools and protocol for quantification of myosin phosphorylation with MRM-MS.
PMID:30622916
Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards.
PMID:30525668
Discovery and Quantification of Nonhuman Proteins in Human Milk.
PMID:30489082
Clinical potential of mass spectrometry-based proteogenomics.
PMID:30487530
Artificial Intelligence Understands Peptide Observability and Assists With Absolute Protein Quantification.
PMID:30483279
Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC.
PMID:30296937
Infection-Induced Peroxisome Biogenesis Is a Metabolic Strategy for Herpesvirus Replication.
PMID:30269970
Layers of regulation of cell-cycle gene expression in the budding yeast Saccharomyces cerevisiae.
PMID:30207828
Evaluation of Unconventional Protein Secretion by Saccharomyces cerevisiae and other Fungi.
PMID:30200367
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.
PMID:30104418
Evaluation of Serum Glycoprotein Biomarker Candidates for Detection of Esophageal Adenocarcinoma and Surveillance of Barrett's Esophagus.
PMID:30097534
Development of a Gill Assay Library for Ecological Proteomics of Threespine Sticklebacks (Gasterosteus aculeatus).
PMID:30093419
Mass spectrometry quantitation of proteins from small pools of developing auditory and vestibular cells.
PMID:30015805
Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer.
PMID:29977602
MRMAssayDB: an integrated resource for validated targeted proteomics assays.
PMID:29762640
A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations.
PMID:29655704
Discrimination of Isomers of Released N- and O-Glycans Using Diagnostic Product Ions in Negative Ion PGC-LC-ESI-MS/MS.
PMID:29603058
Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline.
PMID:29487113
A Multiplexed Mass Spectrometry-Based Assay for Robust Quantification of Phosphosignaling in Response to DNA Damage.
PMID:29474155
Application of targeted mass spectrometry in bottom-up proteomics for systems biology research.
PMID:29452276
Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species.
PMID:29358734
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.
PMID:29199020
Comparison of Quantitative Mass Spectrometry Platforms for Monitoring Kinase ATP Probe Uptake in Lung Cancer.
PMID:29164889
Multiplexed Liquid Chromatography-Multiple Reaction Monitoring Mass Spectrometry Quantification of Cancer Signaling Proteins.
PMID:28808993
The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics.
PMID:28691345
Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae.
PMID:28654654
Second generation multiple reaction monitoring assays for enhanced detection of ultra-low abundance Mycobacterium tuberculosis peptides in human serum.
PMID:28592925
Proteomics investigation of OSCC-specific salivary biomarkers in a Hungarian population highlights the importance of identification of population-tailored biomarkers.
PMID:28545132
Role of Type 2 NAD(P)H Dehydrogenase NdbC in Redox Regulation of Carbon Allocation in Synechocystis.
PMID:28533358
MSstatsQC: Longitudinal System Suitability Monitoring and Quality Control for Targeted Proteomic Experiments.
PMID:28483925
Clinical applications of quantitative proteomics using targeted and untargeted data-independent acquisition techniques.
PMID:28436239
An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells.
PMID:28388416
SRM dataset of the proteome of inactivated iron-sulfur cluster biogenesis regulator SufR in Synechocystis sp. PCC 6803.
PMID:28349105
Osmolality/salinity-responsive enhancers (OSREs) control induction of osmoprotective genes in euryhaline fish.
PMID:28289196
Targeted Proteomics and Absolute Protein Quantification for the Construction of a Stoichiometric Host-Pathogen Surface Density Model.
PMID:28183813
Myofibrillar Z-discs Are a Protein Phosphorylation Hot Spot with Protein Kinase C (PKCα) Modulating Protein Dynamics.
PMID:28028127
A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry.
PMID:27997545
Mass Spectrometry Analysis of Lysine Posttranslational Modifications of Tau Protein from Alzheimer's Disease Brain.
PMID:27975250
An Optimized Chromatographic Strategy for Multiplexing In Parallel Reaction Monitoring Mass Spectrometry: Insights from Quantitation of Activated Kinases.
PMID:27940637
Personalized Proteomics: The Future of Precision Medicine.
PMID:27882306
Quantifying the human proteome.
PMID:27727212
An Automated Pipeline to Monitor System Performance in Liquid Chromatography-Tandem Mass Spectrometry Proteomic Experiments.
PMID:27700092
Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.
PMID:27453469
Gadd45a Protein Promotes Skeletal Muscle Atrophy by Forming a Complex with the Protein Kinase MEKK4.
PMID:27358404
An extra dimension in protein tagging by quantifying universal proteotypic peptides using targeted proteomics.
PMID:27264994
Annexin A5 is the Most Abundant Membrane-Associated Protein in Stereocilia but is Dispensable for Hair-Bundle Development and Function.
PMID:27251877
SWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries.
PMID:27161445
Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions.
PMID:27099342
Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.
PMID:26873250
Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.
PMID:26867747
Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.
PMID:26719571
MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development.
PMID:26652794
Exploring the potential of public proteomics data.
PMID:26449181
Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows.
PMID:26398777
Protein acetylation dynamics in response to carbon overflow in Escherichia coli.
PMID:26264774
Quantification of HER2 by Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded (FFPE) Breast Cancer Tissues.
PMID:26149442
SIRT1 deacetylates RORγt and enhances Th17 cell generation.
PMID:25918343
YPED: an integrated bioinformatics suite and database for mass spectrometry-based proteomics research.
PMID:25712262
Data-independent MS/MS quantification of neuropeptides for determination of putative feeding-related neurohormones in microdialysate.
PMID:25552291