The SEED genome comparison environment
Environment for comparative genome analysis.
Description
More detailed information about this field from each metasource.
Environment for comparative genome analysis.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:37.780465
Webpage:
http://www.theseed.org/Webpage
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
The RAST Server: rapid annotations using subsystems technology
PMID: 18261238
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.780465
Publications
More detailed information about this field from each metasource.
The RAST Server: rapid annotations using subsystems technology
PMID: 18261238
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.780465
-
The RAST Server: rapid annotations using subsystems technology
PubMed citations: 5400.
5400 articles citing: The RAST Server: rapid annotations using subsystems technology
Characterization of Novel Lytic Myoviridae Phage Infecting Multidrug-Resistant Acinetobacter baumannii and Synergistic Antimicrobial Efficacy between Phage and Sacha Inchi Oil. PMID:35337089
Comparative Genome Analysis of the Photosynthetic Betaproteobacteria of the Genus Rhodocyclus: Heterogeneity within Strains Assigned to Rhodocyclus tenuis and Description of Rhodocyclus gracilis sp. nov. as a New Species. PMID:35336224
Harnessing Paenarthrobacter ureafaciens YL1 and Pseudomonas koreensis YL2 Interactions to Improve Degradation of Sulfamethoxazole. PMID:35336223
Reverse Genomics: Design of Universal Epitope Sets to Isolate All Saccharibacteria Members from the Human Oral Cavity. PMID:35336177
Legionella pneumophila in Municipal Shower Systems in Stavanger, Norway; A Longitudinal Surveillance Study Using Whole Genome Sequencing in Risk Management. PMID:35336109
Comparative Genomics and Pathogenicity Analysis of Two Bacterial Symbionts of Entomopathogenic Nematodes: The Role of the GroEL Protein in Virulence. PMID:35336062
Comparison of Auxenochlorella protothecoides and Chlorella spp. Chloroplast Genomes: Evidence for Endosymbiosis and Horizontal Virus-like Gene Transfer. PMID:35330209
Biochemical Properties of a New Polysaccharide Lyase Family 25 Ulvan Lyase TsUly25B from Marine Bacterium Thalassomonas sp. LD5. PMID:35323467
Evidence for association of Vibrio echinoideorum with tissue necrosis on test of the green sea urchin Strongylocentrotus droebachiensis. PMID:35318339
Identification and Genome Analysis of an Arsenic-Metabolizing Strain of Citrobacter youngae IITK SM2 in Middle Indo-Gangetic Plain Groundwater. PMID:35309170
Isomaltooligosaccharides utilization and genomic characterization of human infant anti-inflammatory Bifidobacterium longum and Bifidobacterium breve strains. PMID:35299989
Complete genome sequence of Bacillus thuringiensis BR145, a strain with insecticidal activity against Lepidoptera pests. PMID:35298585
Isolation, Characterization, and Tea Growth-Promoting Analysis of JW-CZ2, a Bacterium With 1-Aminocyclopropane-1-Carboxylic Acid Deaminase Activity Isolated From the Rhizosphere Soils of Tea Plants. PMID:35295310
Genetic Characteristics of Multiple Copies of Tn1546-Like Elements in ermB-Positive Methicillin-Resistant Staphylococcus aureus From Mainland China. PMID:35295307
Poly-cis-isoprene Degradation by Nocardia sp. BSTN01 Isolated from Industrial Waste. PMID:35286594
Application of Psychrotolerant Antarctic Bacteria and Their Metabolites as Efficient Plant Growth Promoting Agents. PMID:35284420
Limosilactobacillus fermentum ING8, a Potential Multifunctional Non-Starter Strain with Relevant Technological Properties and Antimicrobial Activity. PMID:35267336
Integrative Assessments on Molecular Taxonomy of Acidiferrobacter thiooxydans ZJ and Its Environmental Adaptation Based on Mobile Genetic Elements. PMID:35250944
Draft genome sequence of Psychrobacter nivimaris LAMA 639 and its biotechnological potential. PMID:35242911
Considerations for constructing a protein sequence database for metaproteomics. PMID:35242286
Analysis of colistin resistance in carbapenem-resistant Enterobacterales and XDR Klebsiella pneumoniae. PMID:35237435
Antimicrobial resistance and population genomics of multidrug-resistant Escherichia coli in pig farms in mainland China. PMID:35236849
Draft Genome Sequences of Buttiauxella spp. Isolates from Water and Gastropods with Putative β-d-Glucuronidase Activity. PMID:35234507
Analysis of global Aeromonas veronii genomes provides novel information on source of infection and virulence in human gastrointestinal diseases. PMID:35227192
First identification of bla NDM-5 producing Escherichia coli from neonates and a HIV infected adult in Tanzania. PMID:35225760
A Polyvalent Broad-Spectrum Escherichia Phage Tequatrovirus EP01 Capable of Controlling Salmonella and Escherichia coli Contamination in Foods. PMID:35215879
Three Novel Bacteriophages, J5a, F16Ba, and z1a, Specific for Bacillus anthracis, Define a New Clade of Historical Wbeta Phage Relatives. PMID:35215807
Isolation and Characterization of a Novel Autographiviridae Phage and Its Combined Effect with Tigecycline in Controlling Multidrug-Resistant Acinetobacter baumannii-Associated Skin and Soft Tissue Infections. PMID:35215788
First Characterization of a Hafnia Phage Reveals Extraordinarily Large Burst Size and Unusual Plaque Polymorphism. PMID:35211099
Physiological and Genomic Characterization of Actinotalea subterranea sp. nov. from Oil-Degrading Methanogenic Enrichment and Reclassification of the Family Actinotaleaceae. PMID:35208832
Genomic Analyses of Weissella cibaria W25, a Potential Bacteriocin-Producing Strain Isolated from Pasture in Campos das Vertentes, Minas Gerais, Brazil. PMID:35208769
Genomic Comparison, Phylogeny and Taxonomic Reevaluation of the Ectothiorhodospiraceae and Description of Halorhodospiraceae fam. nov. and Halochlorospira gen. nov. PMID:35208750
Genome Characterization and Probiotic Potential of Corynebacterium amycolatum Human Vaginal Isolates. PMID:35208706
Dataset of genome sequence, de novo assembly, and functional annotation of Ruegeria sp. (PBVC088), a marine bacterium associated with the toxin-producing harmful dinoflagellate, Pyrodinium bahamense var. compressum. PMID:35198665
Long-Read Sequencing Reveals Genetic Adaptation of Bartonella Adhesin A Among Different Bartonella henselae Isolates. PMID:35197960
Delineation of ISEcp1 and IS26-Mediated Plasmid Fusion Processes by MinION Single-Molecule Long-Read Sequencing. PMID:35197941
Comparative genomics and evolutionary analysis of Lactococcus garvieae isolated from human endocarditis. PMID:35196218
Unveiling the genomic potential of Pseudomonas type strains for discovering new natural products. PMID:35195510
Isolation, Characterization and Draft Genome Analysis of Bacteriophages Infecting Acidovorax citrulli. PMID:35185829
Comparative Genome Analysis of Three Komagataeibacter Strains Used for Practical Production of Nata-de-Coco. PMID:35185823
Comparative Genomics Reveal the Animal-Associated Features of the Acanthopleuribacteraceae Bacteria, and Description of Sulfidibacter corallicola gen. nov., sp., nov. PMID:35173698
The Resistance Mechanism Governs Physiological Adaptation of Escherichia coli to Growth With Sublethal Concentrations of Carbapenem. PMID:35173695
Enhanced antibacterial effect of a novel Friunavirus phage vWU2001 in combination with colistin against carbapenem-resistant Acinetobacter baumannii. PMID:35173237
Comparative genome analyses of five Vibrio penaeicida strains provide insights into their virulence-related factors. PMID:35171089
Isolation and Characterization of Novel Lytic Phages Infecting Multidrug-Resistant Escherichia coli. PMID:35171030
Haloterrigena gelatinilytica sp. nov., a new extremely halophilic archaeon isolated from salt-lake. PMID:35166931
Bacillusvelezensis Strains for Protecting Cucumber Plants from Root-Knot Nematode Meloidogyne incognita in a Greenhouse. PMID:35161255
Pilot Study on Poultry Meat from Antibiotic Free and Conventional Farms: Can Metagenomics Detect Any Difference? PMID:35159402
The interplay between community and hospital Enterococcus faecium clones within health-care settings: a genomic analysis. PMID:35146465
Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru. PMID:35145887
Identification and Characterization of a Potential Antibiotic Producing Strain of Pantoea ananatis. PMID:35145564
Genomewide transcriptional response of Escherichia coli O157:H7 to norepinephrine. PMID:35135480
Complete Genome Sequence of a Jumbo Bacteriophage, Escherichia Phage vB_EcoM_EC001. PMID:35112904
Simultaneous Single-Cell Genome and Transcriptome Sequencing of Termite Hindgut Protists Reveals Metabolic and Evolutionary Traits of Their Endosymbionts. PMID:35107338
Genomic Features and Pervasive Negative Selection in Rhodanobacter Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer. PMID:35107332
Phenotypic and Molecular-Phylogenetic Analyses Reveal Distinct Features of Crown Gall-Associated Xanthomonas Strains. PMID:35107322
Crystal structure and initial characterization of a novel archaeal-like Holliday junction-resolving enzyme from Thermus thermophilus phage Tth15-6. PMID:35102887
Nosocomial Outbreak of Carbapenemase-Producing Proteus mirabilis With Two Novel Salmonella Genomic Island 1 Variants Carrying Different bla NDM-1 Gene Copies in China. PMID:35095811
The involvement of type IV pili and the phytochrome CphA in gliding motility, lateral motility and photophobotaxis of the cyanobacterium Phormidium lacuna. PMID:35085243
Genome Sequence of Litorilinea aerophila, an Icelandic Intertidal Hot Springs Bacterium. PMID:35084223
Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation. PMID:35083439
Genome-Resolved Metagenomic Insights into Massive Seasonal Ammonia-Oxidizing Archaea Blooms in San Francisco Bay. PMID:35076275
Unique high Arctic methane metabolizing community revealed through in situ 13CH4-DNA-SIP enrichment in concert with genome binning. PMID:35064149
Genome insights into the pharmaceutical and plant growth promoting features of the novel species Nocardia alni sp. nov. PMID:35062865
Isolation and characterization of Streptomyces bacteriophages and Streptomyces strains encoding biosynthetic arsenals. PMID:35061755
Pedobacter segetis sp. nov., a Novel Bacterium Isolated from Soil. PMID:35059849
Comparative Genomics of Typical and Atypical Aeromonas salmonicida Complete Genomes Revealed New Insights into Pathogenesis Evolution. PMID:35056638
Capture of Essential Trace Elements and Phosphate Accumulation as a Basis for the Antimicrobial Activity of a New Ultramicrobacterium-Microbacterium lacticum Str. F2E. PMID:35056577
Elioraea tepida, sp. nov., a Moderately Thermophilic Aerobic Anoxygenic Phototrophic Bacterium Isolated from the Mat Community of an Alkaline Siliceous Hot Spring in Yellowstone National Park, WY, USA. PMID:35056529
Evaluation of Antibiotic Resistance of Salmonella Serotypes and Whole-Genome Sequencing of Multiresistant Strains Isolated from Food Products in Russia. PMID:35052878
Whole-Genome Sequence of Paenibacillus polymyxa Strain SRT9.1, a Promising Plant Growth-Promoting Bacterium. PMID:35049350
Genomic and Phenotypic Evolution of Tigecycline-Resistant Acinetobacter baumannii in Critically Ill Patients. PMID:35044218
Top-Down Enrichment Strategy to Co-cultivate Lactic Acid and Lignocellulolytic Bacteria From the Megathyrsus maximus Phyllosphere. PMID:35035382
Characterization of the genome and serine protease of a novel Bacillus subtilis isolate. PMID:35031913
Description of Aureibaculum luteum sp. nov. and Aureibaculum flavum sp. nov. isolated from Antarctic intertidal sediments. PMID:35022928
Insight into the symbiotic lifestyle of DPANN archaea revealed by cultivation and genome analyses. PMID:35022241
Emergence of a KPC-90 Variant that Confers Resistance to Ceftazidime-Avibactam in an ST463 Carbapenem-Resistant Pseudomonas aeruginosa Strain. PMID:35019766
Emergence of Clinical Clostridioides difficile Isolates With Decreased Susceptibility to Vancomycin. PMID:35016207
Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. PMID:35013291
Genotypic and Phenotypic Characterization of Novel Sequence Types of Carbapenem-Resistant Acinetobacter baumannii, With Heterogeneous Resistance Determinants and Targeted Variations in Efflux Operons. PMID:35002996
Bacillus cytotoxicus Genomics: Chromosomal Diversity and Plasmidome Versatility. PMID:34992589
Prediction of trehalose-metabolic pathway and comparative analysis of KEGG, MetaCyc, and RAST databases based on complete genome of Variovorax sp. PAMC28711. PMID:34991451
A temperate Siphoviridae bacteriophage isolate from Siberian tiger enhances the virulence of methicillin-resistant Staphylococcus aureus through distinct mechanisms. PMID:34986751
Characterization of a novel broad-spectrum endolysin PlyD4 encoded by a highly conserved prophage found in Aeromonas hydrophila ST251 strains. PMID:34985567
Prevalence and Molecular Characterization of Fluoroquinolone-Resistant Escherichia coli in Healthy Children. PMID:34966693
Nematicidal Activity of the Endophyte Serratia ureilytica against Nacobbus aberrans in Chili Plants (Capsicum annuum L.) and Identification of Genes Related to Biological Control. PMID:34961126
Presence and Persistence of Putative Lytic and Temperate Bacteriophages in Vaginal Metagenomes from South African Adolescents. PMID:34960611
Genomic Characteristics of Stx2e-Producing Escherichia coli Strains Derived from Humans, Animals, and Meats. PMID:34959506
Complete genome sequence of Bacillus coagulans CACC834 isolated from canine. PMID:34957459
Taxonomy and Functional Diversity in the Fecal Microbiome of Beef Cattle Reared in Brazilian Traditional and Semi-Intensive Production Systems. PMID:34956130
Comparative genomics of Photobacterium species from terrestrial and marine habitats. PMID:34950912
Three Novel Bacteria Associated with Two Centric Diatom Species from the Mediterranean Sea, Thalassiosira rotula and Skeletonema marinoi. PMID:34947994
Identification of the EdcR Estrogen-Dependent Repressor in Caenibius tardaugens NBRC 16725: Construction of a Cellular Estradiol Biosensor. PMID:34946795
Steroid Metabolism in Thermophilic Actinobacterium Saccharopolyspora hirsuta VKM Ac-666T. PMID:34946155
A New ICEclc Subfamily Integrative and Conjugative Element Responsible for Horizontal Transfer of Biphenyl and Salicylic Acid Catabolic Pathway in the PCB-Degrading Strain Pseudomonas stutzeri KF716. PMID:34946064
Xerotolerance: A New Property in Exiguobacterium Genus. PMID:34946057
DNA Methyltransferase HsdM Induce Drug Resistance on Mycobacterium tuberculosis via Multiple Effects. PMID:34943756
Salmonella in Pig Farms and on Pig Meat in Suriname. PMID:34943707
Alteribacter salitolerans sp. nov., isolated from a saline-alkaline soil. PMID:34936048
Characteristics of a Bacteriophage, vB_Kox_ZX8, Isolated From Clinical Klebsiella oxytoca and Its Therapeutic Effect on Mice Bacteremia. PMID:34925270
Draft Genome Sequence of Bacillus pacificus KVCMST-8A-12, Isolated from a Marine Sediment Sample from the Kanyakumari Coast, India. PMID:34913714
Genomic comparison and phenotypic profiling of small colony variants of Burkholderia pseudomallei. PMID:34910764
Pseudaminobacter soli sp. nov., Isolated from Paddy Soil Contaminated with Heavy Metals. PMID:34905083
Identifying the essential nutritional requirements of the probiotic bacteria Bifidobacterium animalis and Bifidobacterium longum through genome-scale modeling. PMID:34887435
Complete Genome Sequence of Lacticaseibacillus rhamnosus CAU 1365, Isolated from Kimchi. PMID:34881978
Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater. PMID:34878814
Azithromycin Resistance in Shiga Toxin-Producing Escherichia coli in France between 2004 and 2020 and Detection of mef(C)-mph(G) Genes. PMID:34871091
Insights Into Mechanism of the Naphthalene-Enhanced Biodegradation of Phenanthrene by Pseudomonas sp. SL-6 Based on Omics Analysis. PMID:34867892
Lactiplantibacillus plantarum LRCC5314 includes a gene for serotonin biosynthesis via the tryptophan metabolic pathway. PMID:34865198
Genome In Silico and In Vitro Analysis of the Probiotic Properties of a Bacterial Endophyte, Bacillus Paranthracis Strain MHSD3. PMID:34858466
Introducing a Novel, Broad Host Range Temperate Phage Family Infecting Rhizobium leguminosarum and Beyond. PMID:34858375
Genome Sequence of the Thermophilic Soil Bacterium Ureibacillus terrenus ATCC BAA-384T. PMID:34854732
Full Genome Sequence of a Methanomassiliicoccales Representative Enriched from Peat Soil. PMID:34854727
Draft Genome Sequences of Cefepime-Resistant and -Susceptible Escherichia coli Strains and Imipenem-Resistant and -Susceptible Pseudomonas aeruginosa Strains. PMID:34854701
Draft genome sequence of Stenotrophomonas maltophilia strain P13 gives insight into its protease production and assessment of sulfur and nitrogen metabolism. PMID:34841305
First report from Bangladesh on genetic diversity of multidrug-resistant Pasteurella multocida type B:2 in fowl cholera. PMID:34840474
Genomic Analysis of Prophages from Klebsiella pneumoniae Clinical Isolates. PMID:34835377
Campylobacter jejuni in Different Canine Populations: Characteristics and Zoonotic Potential. PMID:34835357
Deciphering the Molecular Basis for Attenuation of Flavobacterium columnare Strain Fc1723 Used as Modified Live Vaccine against Columnaris Disease. PMID:34835301
Isolation of the Novel Phage PHB09 and Its Potential Use against the Plant Pathogen Pseudomonas syringae pv. actinidiae. PMID:34835081
BtuB-Dependent Infection of the T5-like Yersinia Phage ϕR2-01. PMID:34834977
Lacticaseibacillus paracasei: Occurrence in the Human Gut Microbiota and K-Mer-Based Assessment of Intraspecies Diversity. PMID:34833122
Genomic Characterization of a Proteus sp. Strain of Animal Origin Co-Carrying blaNDM-1 and lnu(G). PMID:34827349
Unpuzzling Friunavirus-Host Interactions One Piece at a Time: Phage Recognizes Acinetobacter pittii via a New K38 Capsule Depolymerase. PMID:34827242
Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov. PMID:34826100
Complete Genome Sequence of Two Deep-Sea Streptomyces Isolates from Madeira Archipelago and Evaluation of Their Biosynthetic Potential. PMID:34822492
Data on the genome of Bacillus subtilis A1- Midalam from beach soil. PMID:34820494
Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome. PMID:34814938
In vivo and in silico Virulence Analysis of Leptospira Species Isolated From Environments and Rodents in Leptospirosis Outbreak Areas in Malaysia. PMID:34803975
Properties of Modestobacter deserti sp. nov., a Kind of Novel Phosphate-Solubilizing Actinobacteria Inhabited in the Desert Biological Soil Crusts. PMID:34803963
The whole-genome sequencing in predicting Mycobacterium tuberculosis drug susceptibility and resistance in Papua, Indonesia. PMID:34802420
The diversity among the species Tetragenococcus halophilus including new isolates from a lupine seed fermentation. PMID:34798831
High-quality whole-genome sequence analysis of Lactobacillus paragasseri UBLG-36 reveals oxalate-degrading potential of the strain. PMID:34797858
Generation of a Gluconobacter oxydans knockout collection for improved extraction of rare earth elements. PMID:34795278
Whole-genome sequence and broad-spectrum antibacterial activity of Chryseobacterium cucumeris strain MW-6 isolated from the Arabian Sea. PMID:34790513
Genomic surveillance of Neisseria meningitidis serogroup W in Portugal from 2003 to 2019. PMID:34787749
Genomic Organization of Streptomyces flavotricini NGL1 and Streptomyces erythrochromogenes HMS4 Reveals Differential Plant Beneficial Attributes and Laccase Production Capabilities. PMID:34782960
Land Management Legacy Affects Abundance and Function of the acdS Gene in Wheat Root Associated Pseudomonads. PMID:34777264
Effect of Gamma Irradiation on Enhanced Biological Activities of Exopolysaccharide from Halomonas desertis G11: Biochemical and Genomic Insights. PMID:34771355
Prevalence and Characteristics of Phenicol-Oxazolidinone Resistance Genes in Enterococcus Faecalis and Enterococcus Faecium Isolated from Food-Producing Animals and Meat in Korea. PMID:34768762
Computational Studies of the Intestinal Host-Microbiota Interactome. PMID:34765258
Genome sequence data of Bacillus amyloliquefaciens L-17. PMID:34761085
vB-ApyS-JF1, the First Trueperella pyogenes Phage, Shows Potential as an Alternative Treatment Strategy for Trueperella pyogenes Infections. PMID:34759899
Paenibacillus sp. Strain UY79, Isolated from a Root Nodule of Arachis villosa, Displays a Broad Spectrum of Antifungal Activity. PMID:34757818
Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean. PMID:34750267
Genome editing reveals that pSCL4 is required for chromosome linearity in Streptomyces clavuligerus. PMID:34747689
Nitrogeniibacter aestuarii sp. nov., a Novel Nitrogen-Fixing Bacterium Affiliated to the Family Zoogloeaceae and Phylogeny of the Family Zoogloeaceae Revisited. PMID:34745064
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. PMID:34739369
Comparative Genomic Analysis and a Novel Set of Missense Mutation of the Leptospira weilii Serogroup Mini From the Urine of Asymptomatic Dogs in Thailand. PMID:34733249
Terrestrial-type nitrogen-fixing symbiosis between seagrass and a marine bacterium. PMID:34732889
Mechanisms underlying interactions between two abundant oral commensal bacteria. PMID:34732850
Leaf Bleaching in Rice: A New Disease in Vietnam Caused by Methylobacterium indicum, Its Genomic Characterization and the Development of a Suitable Detection Technique. PMID:34732597
A Novel Microviridae Phage (CLasMV1) From "Candidatus Liberibacter asiaticus". PMID:34721359
Curating COBRA Models of Microbial Metabolism. PMID:34719001
Application of the Metabolic Modeling Pipeline in KBase to Categorize Reactions, Predict Essential Genes, and Predict Pathways in an Isolate Genome. PMID:34719000
Prokaryotic Genome Annotation. PMID:34718997
Transcriptomic analysis of Rhodococcus opacus R7 grown on polyethylene by RNA-seq. PMID:34716360
Metagenomic strategies identify diverse integron-integrase and antibiotic resistance genes in the Antarctic environment. PMID:34713606
MinION sequencing from sea ice cryoconites leads to de novo genome reconstruction from metagenomes. PMID:34702846
Luteirhabdus pelagi gen. nov., sp. nov., a novel member of the family Flavobacteriaceae, isolated from the West Pacific Ocean. PMID:34698880
Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean. PMID:34697433
Phages from Genus Bruynoghevirus and Phage Therapy: Pseudomonas Phage Delta Case. PMID:34696396
MINTIA: a metagenomic INserT integrated assembly and annotation tool. PMID:34692239
Expanding Characterized Diversity and the Pool of Complete Genome Sequences of Methylococcus Species, the Bacteria of High Environmental and Biotechnological Relevance. PMID:34691008
Whole genome sequencing and comparative genomic analyses of Planococcus alpniumensis MSAK28401T, a new species isolated from Antarctic krill. PMID:34686131
Rubber Degrading Strains: Microtetraspora and Dactylosporangium. PMID:34685283
Characterization and Genome Analysis of Arthrobacter bangladeshi sp. nov., Applied for the Green Synthesis of Silver Nanoparticles and Their Antibacterial Efficacy against Drug-Resistant Human Pathogens. PMID:34683984
Identification of Potential Citrate Metabolism Pathways in Carnobacterium maltaromaticum. PMID:34683489
Whole Genome Sequencing Analysis of Salmonella enterica Serovar Typhi: History and Current Approaches. PMID:34683476
The Predatory Myxobacterium Citreicoccus inhibens gen. nov. sp. nov. Showed Antifungal Activity and Bacteriolytic Property against Phytopathogens. PMID:34683458
Characterization of a New and Efficient Polyvalent Phage Infecting E. coli O157:H7, Salmonella spp., and Shigella sonnei. PMID:34683426
The Characterization of a Novel Phage, pPa_SNUABM_DT01, Infecting Pseudomonas aeruginosa. PMID:34683360
Genome Evolution of Filamentous Cyanobacterium Nostoc Species: From Facultative Symbiosis to Free Living. PMID:34683336
Characterization of blaKPC-2-Carrying Plasmid pR31-KPC from a Pseudomonas aeruginosa Strain Isolated in China. PMID:34680814
Sequence Analyses and Phenotypic Characterization Revealed Multidrug Resistant Gene Insertions in the Genomic Region Encompassing Phase 2 Flagellin Encoding fljAB Genes in Monophasic Variant Salmonella enterica Serovar 4,5,12:i:- Isolates From Various Sources in Thailand. PMID:34675896
Enhancement of Campylobacter hepaticus culturing to facilitate downstream applications. PMID:34675257
Genome Analysis of the Probiotic Strain Enterococcus faecium Ef79OSAU. PMID:34672706
Complete genome of the thermophilic purple sulfur Bacterium Thermochromatium tepidum compared to Allochromatium vinosum and other Chromatiaceae. PMID:34669148
Rossellomorea arthrocnemi sp. nov., a novel plant growth-promoting bacterium used in heavy metal polluted soils as a phytoremediation tool. PMID:34665118
Characterization and genomic analysis of Exiguobacterium alkaliphilum B-3531D, an efficient crude oil degrading strain. PMID:34660213
Effect of Enterococcus faecium as a Water and/or Feed Additive on the Gut Microbiota, Hematologic and Immunological Parameters, and Resistance Against Francisellosis and Streptococcosis in Nile Tilapia (Oreochromis niloticus). PMID:34659177
Genome-Based Taxonomic Rearrangement of the Order Geobacterales Including the Description of Geomonas azotofigens sp. nov. and Geomonas diazotrophica sp. nov. PMID:34659166
Whole-genome sequence data of the proteolytic and bacteriocin producing strain Enterococcus faecalis PK23 isolated from the traditional Halitzia cheese produced in Cyprus. PMID:34646920
A transferrable IncL/M plasmid harboring a gene encoding IMP-1 metallo-β-lactamase in clinical isolates of Enterobacteriaceae. PMID:34645409
Plasmidome of Listeria spp.-The repA-Family Business. PMID:34638661
Dynamic Subspecies Population Structure of Vibrio cholerae in Dhaka, Bangladesh. PMID:34633491
Complete Genome Sequence of the Newly Developed Lactobacillus acidophilus Strain With Improved Thermal Adaptability. PMID:34630344
Metagenomic and Metatranscriptomic Characterization of a Microbial Community That Catalyzes Both Energy-Generating and Energy-Storing Electrode Reactions. PMID:34613754
Interplay between Bacterial Clones and Plasmids in the Spread of Antibiotic Resistance Genes in the Gut: Lessons from a Temporal Study in Veal Calves. PMID:34613750
Overlapping genes in natural and engineered genomes. PMID:34611352
Nesterenkonia sedimenti sp. nov., isolated from marine sediment. PMID:34609528
Ancient Relatives of Modern Maize From the Center of Maize Domestication and Diversification Host Endophytic Bacteria That Confer Tolerance to Nitrogen Starvation. PMID:34603345
Plant growth promoting endophyte Burkholderia contaminans NZ antagonizes phytopathogen Macrophomina phaseolina through melanin synthesis and pyrrolnitrin inhibition. PMID:34591915
Draft Genome Sequence of Streptococcus salivarius AGIRA0003, Isolated from Functional Gastrointestinal Disorder Duodenal Tissue. PMID:34591683
Complete Genome Sequence of a Clinical Isolate of Acinetobacter baumannii Harboring 11 Plasmids. PMID:34591663
Periodically Disturbing the Spatial Structure of Biofilms Can Affect the Production of an Essential Virulence Factor in Pseudomonas aeruginosa. PMID:34581603
Genomic stability among O3:K6 V. parahaemolyticus pandemic strains isolated between 1996 to 2012 in American countries. PMID:34579653
Wastewater from the Edible Oil Industry as a Potential Source of Lipase- and Surfactant-Producing Actinobacteria. PMID:34576882
Whole Genome Sequencing Based Taxonomic Classification, and Comparative Genomic Analysis of Potentially Human Pathogenic Enterobacter spp. Isolated from Chlorinated Wastewater in the North West Province, South Africa. PMID:34576823
Whole-Genome Sequencing of Corallococcus sp. Strain EGB Reveals the Genetic Determinants Linking Taxonomy and Predatory Behavior. PMID:34573403
Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds. PMID:34570338
Draft genome sequence of a prodigiosin-hyperproducing Serratia marcescens strain isolated from Cairo, Egypt. PMID:34568929
Analysis of Phenol Biodegradation in Antibiotic and Heavy Metal Resistant Acinetobacter lwoffii NL1. PMID:34566929
The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids. PMID:34556718
Campylobacter concisus upregulates PD-L1 mRNA expression in IFN-γ sensitized intestinal epithelial cells and induces cell death in esophageal epithelial cells. PMID:34552702
Genomic signatures of Lake Erie bacteria suggest interaction in the Microcystis phycosphere. PMID:34550975
Infective endocarditis caused by Enterobacteriaceae: phenotypic and molecular characterization of Escherichia coli and Klebsiella pneumoniae in Rio de Janeiro, Brazil. PMID:34549374
Characterization and genomic analysis of the first Oceanospirillum phage, vB_OliS_GJ44, representing a novel siphoviral cluster. PMID:34544379
The Pseudoalteromonas multipartite genome: distribution and expression of pangene categories, and a hypothesis for the origin and evolution of the chromid. PMID:34544144
Comparative genome analysis of Clostridium beijerinckii strains isolated from pit mud of Chinese strong flavor baijiu ecosystem. PMID:34542586
Accurate annotation of protein coding sequences with IDTAXA. PMID:34541527
Heat-killed Mycolicibacterium aurum Aogashima: An environmental nonpathogenic actinobacteria under development as a safe novel food ingredient. PMID:34531996
Genome Mining of Three Plant Growth-Promoting Bacillus Species from Maize Rhizosphere. PMID:34529229
Evaluation of probiotic characteristics and whole genome analysis of Pediococcus pentosaceus MR001 for use as probiotic bacteria in shrimp aquaculture. PMID:34526534
Complete genome sequence and identification of polyunsaturated fatty acid biosynthesis genes of the myxobacterium Minicystis rosea DSM 24000T. PMID:34511070
Multiplication of ampC upon Exposure to a Beta-Lactam Antibiotic Results in a Transferable Transposon in Escherichia coli. PMID:34502136
Genome Sequence of Microbacterium sp. Strain R1, Isolated from a Synechococcus Culture. PMID:34498928
Draft Genome Sequence of Salegentibacter sp. Strain BDJ18, a Plankton-Associated Bacterium in the Northeast Atlantic Ocean. PMID:34498925
Draft Genome Sequence of Pseudoalteromonas sp. Strain JC3. PMID:34498923
Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria. PMID:34491524
Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments. PMID:34491521
The Perception of Rhizosphere Bacterial Communication Signals Leads to Transcriptome Reprogramming in Lysobacter capsici AZ78, a Plant Beneficial Bacterium. PMID:34489914
Genome-Based Characterization of Plant-Associated Rhodococcus qingshengii RL1 Reveals Stress Tolerance and Plant-Microbe Interaction Traits. PMID:34489897
Genome Sequencing and Comparative Genomics of Indian Isolates of Brucella melitensis. PMID:34489888
Whole genome sequencing data of Klebsiella aerogenes isolated from agricultural soil of Haryana, India. PMID:34485641
Echinicola salinicaeni sp. nov., a novel bacterium isolated from saltern mud. PMID:34480253
Complex History of Aerobic Respiration and Phototrophy in the Chloroflexota Class Anaerolineae Revealed by High-Quality Draft Genome of Ca. Roseilinea mizusawaensis AA3_104. PMID:34470945
Oceaniferula marina gen.nov., sp.nov., an anti-fluoroquinolone bacterium isolated from marine sediment. PMID:34468960
Biodesulfurization Induces Reprogramming of Sulfur Metabolism in Rhodococcus qingshengii IGTS8: Proteomics and Untargeted Metabolomics. PMID:34468196
Genomic comparisons and phylogenetic analysis of mastitis-related staphylococci with a focus on adhesion, biofilm, and related regulatory genes. PMID:34462461
Characterization and Application of a Lytic Phage D10 against Multidrug-Resistant Salmonella. PMID:34452490
Detection and Characterization of Clinical Bordetella trematum Isolates from Chronic Wounds. PMID:34451430
Tight Adherence (Tad) Pilus Genes Indicate Putative Niche Differentiation in Phytoplankton Bloom Associated Rhodobacterales. PMID:34447362
Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits. PMID:34442736
Preliminary Report on the Acquisition, Persistence, and Potential Transmission of Citrus tristeza virus by Diaphorina citri. PMID:34442301
Functional Genomic Insights into Probiotic Bacillus siamensis Strain B28 from Traditional Korean Fermented Kimchi. PMID:34441683
Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera. PMID:34440014
Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727T. PMID:34430681
Comparative Genomics Reveals a Remarkable Biosynthetic Potential of the Streptomyces Phylogenetic Lineage Associated with Rugose-Ornamented Spores. PMID:34427515
Complete genome sequence of Trueperella pyogenes strain Arash114, isolated from the uterus of a water buffalo (Bubalus bubalis) in Iran. PMID:34425879
A Recently Assembled Degradation Pathway for 2,3-Dichloronitrobenzene in Diaphorobacter sp. Strain JS3051. PMID:34425699
Streptomyces griseocarneus R132 expresses antimicrobial genes and produces metabolites that modulate Galleria mellonella immune system. PMID:34422537
Functional and Genomic Analysis of Rouxiella badensis SER3 as a Novel Biocontrol Agent of Fungal Pathogens. PMID:34421868
Genomic Analysis of Antibiotic-Resistant Staphylococcus epidermidis Isolates From Clinical Sources in the Kwazulu-Natal Province, South Africa. PMID:34421833
Whole genome analysis unveils genetic diversity and potential virulence determinants in Vibrio parahaemolyticus associated with disease outbreak among cultured Litopenaeus vannamei (Pacific white shrimp) in India. PMID:34415829
Paenarthrobacter sp. GOM3 Is a Novel Marine Species With Monoaromatic Degradation Relevance. PMID:34413843
Whole Genomic analysis of a clinical isolate of Uropathogenic Escherichia coli strain of Sequence Type - 101 carrying the drug resistance NDM-7 in IncX3 plasmid. PMID:34393427
Winogradskyella marina sp. nov., isolated from marine sediment. PMID:34392381
Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae. PMID:34390569
Hawaiian Nysius Insects Rely on an Obligate Symbiont with a Reduced Genome That Retains a Discrete Nutritional Profile to Match Their Plant Seed Diet. PMID:34383896
Draft Genome Sequences of Enterobacter spp., Lelliottia spp., and Serratia spp., Coliform Bacteria from Drinking Water Reservoirs and Lakes. PMID:34382825
Novel PhoH-encoding vibriophages with lytic activity against environmental Vibrio strains. PMID:34379161
Conversion of dietary inositol into propionate and acetate by commensal Anaerostipes associates with host health. PMID:34376656
Bacteriophages fEV-1 and fD1 Infect Yersinia pestis. PMID:34372590
A New Enterobacter cloacae Bacteriophage EC151 Encodes the Deazaguanine DNA Modification Pathway and Represents a New Genus within the Siphoviridae Family. PMID:34372577
Characterization of Anti-Bacterial Effect of the Two New Phages against Uropathogenic Escherichia coli. PMID:34372554
BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements. PMID:34367079
Sphingobacterium pedocola sp. nov. a novel halotolerant bacterium isolated from agricultural soil. PMID:34363180
Pseudomonas aeruginosa PAO 1 In Vitro Time-Kill Kinetics Using Single Phages and Phage Formulations-Modulating Death, Adaptation, and Resistance. PMID:34356798
Characterisation of Colistin -Resistant Enterobacterales and Acinetobacter Strains Carrying mcr Genes from Asian Aquaculture Products. PMID:34356760
An extended reconstruction of human gut microbiota metabolism of dietary compounds. PMID:34354065
Comparative genome analysis of Alkalihalobacillus okhensis Kh10-101 T reveals insights into adaptive mechanisms for halo-alkali tolerance. PMID:34350093
Extended-Spectrum β-Lactamase-Producing and mcr-1-Positive Escherichia coli from the Gut Microbiota of Healthy Singaporeans. PMID:34347523
Characterization of the first Pseudomonas grimontii bacteriophage, PMBT3. PMID:34347170
Emergence of IncHI2 Plasmids With Mobilized Colistin Resistance (mcr)-9 Gene in ESBL-Producing, Multidrug-Resistant Salmonella Typhimurium and Its Monophasic Variant ST34 From Food-Producing Animals in Italy. PMID:34335538
New Insights on Streptococcus dysgalactiae subsp. dysgalactiae Isolates. PMID:34335512
The Tetracycline Resistance Gene, tet(W) in Bifidobacterium animalis subsp. lactis Follows Phylogeny and Differs From tet(W) in Other Species. PMID:34335493
A Novel Polyvalent Bacteriophage vB_EcoM_swi3 Infects Pathogenic Escherichia coli and Salmonella enteritidis. PMID:34335489
The interactions of bacteriophage Ace and Shiga toxin-producing Escherichia coli during biocontrol. PMID:34329454
309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula. PMID:34321485
Whole-genome sequencing of two Streptomyces strains isolated from the sand dunes of Sahara. PMID:34315408
One health pathogen surveillance demonstrated the dissemination of gut pathogens within the two coastal regions associated with intensive farming. PMID:34301298
Pectobacterium parmentieri SCC 3193 Mutants with Altered Synthesis of Cell Surface Polysaccharides Are Resistant to N4-Like Lytic Bacteriophage ϕA38 (vB_Ppp_A38) but Express Decreased Virulence in Potato (Solanum tuberosum L.) Plants. PMID:34298965
Chryseobacterium pennae sp. nov., isolated from poultry feather waste. PMID:34292147
Complete Genome Sequence of a Bacteroides fragilis Bacteriophage, vB_BfrS_NCTC. PMID:34292066
Probiotic and Antifungal Attributes of Levilactobacillus brevis MYSN105, Isolated From an Indian Traditional Fermented Food Pozha. PMID:34290687
Comprehensive Molecular Dissection of Dermatophilus congolensis Genome and First Observation of tet(Z) Tetracycline Resistance. PMID:34281179
Bacteriomic Analyses of Asian Citrus Psyllid and Citrus Samples Infected With "Candidatus Liberibacter asiaticus" in Southern California and Huanglongbing Management Implications. PMID:34276617
Experimental and Genomic Evaluation of the Oestrogen Degrading Bacterium Rhodococcus equi ATCC13557. PMID:34276604
Towards omics-based predictions of planktonic functional composition from environmental data. PMID:34272373
Resident TP712 Prophage of Lactococcus lactis Strain MG1363 Provides Extra Holin Functions to the P335 Phage CAP for Effective Host Lysis. PMID:34260308
Aquisphaera insulae sp. nov., a new member in the family Isosphaeraceae, isolated from the floating island of Loktak lake and emended description of the genus Aquisphaera. PMID:34259976
Whole-Genome Sequence Data Analysis of Anoxybacillus kamchatkensis NASTPD13 Isolated from Hot Spring of Myagdi, Nepal. PMID:34258259
IS26 Is Responsible for the Evolution and Transmission of blaNDM-Harboring Plasmids in Escherichia coli of Poultry Origin in China. PMID:34254816
Roseobacters in a Sea of Poly- and Paraphyly: Whole Genome-Based Taxonomy of the Family Rhodobacteraceae and the Proposal for the Split of the "Roseobacter Clade" Into a Novel Family, Roseobacteraceae fam. nov. PMID:34248901
Interplay of Various Evolutionary Modes in Genome Diversification and Adaptive Evolution of the Family Sulfolobaceae. PMID:34248865
Sulfobacillus harzensis sp. nov., an acidophilic bacterium inhabiting mine tailings from a polymetallic mine. PMID:34236956
Draft Genome Sequence of Staphylococcus succinus Strain GN1, Isolated from a Basement Floor in Milwaukee, WI. PMID:34236223
Identification and Characterization of Mycobacterial Species Using Whole-Genome Sequences. PMID:34235665
Whole genome sequence data of Bacillus australimaris strain B28A, isolated from Marine Water in India. PMID:34235237
Identification of floR Variants Associated With a Novel Tn4371-Like Integrative and Conjugative Element in Clinical Pseudomonas aeruginosa Isolates. PMID:34235095
Review of Machine Learning Methods for the Prediction and Reconstruction of Metabolic Pathways. PMID:34222327
Genomic and Phenotypic Characterization of Chloracidobacterium Isolates Provides Evidence for Multiple Species. PMID:34220789
Genomic Analysis of the Endophytic Stenotrophomonas Strain 169 Reveals Features Related to Plant-Growth Promotion and Stress Tolerance. PMID:34220780
Mangrovivirga cuniculi gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family Mangrovivirgaceae fam. nov. PMID:34214025
Comparative Genomics of 42 Arcanobacterium phocae Strains. PMID:34207365
Genomic Analysis of Prophages Recovered from Listeria monocytogenes Lysogens Found in Seafood and Seafood-Related Environment. PMID:34206706
Antimicrobial Resistance Determinants in Genomes and Plasmids from Acinetobacter baumannii Clinical Isolates. PMID:34206348
Genotypic and Phenotypic Characterization of Highly Alkaline-Resistant Carnobacterium maltaromaticum V-Type ATPase from the Dairy Product Based on Comparative Genomics. PMID:34204143
Assessment of Evolutionary Relationships for Prioritization of Myxobacteria for Natural Product Discovery. PMID:34202719
Beneficial Microorganisms to Control the Gray Mold of Grapevine: From Screening to Mechanisms. PMID:34202293
The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae. PMID:34202208
Genomic analysis provides insights into the Gordonia sp. W3S5 taxonomy and sulfur metabolism-related genes. PMID:34194893
Isolation of Commensal Escherichia coli Strains from Feces of Healthy Laboratory Mice or Rats. PMID:34179293
Subtypes, resistance and virulence platforms in extended-drug resistant Acinetobacter baumannii Romanian isolates. PMID:34168184
Vitreoscilla massiliensis sp. nov., Isolated From the Stool of an Amazonian Patient. PMID:34165609
Draft Genome Sequences of Acidithrix sp. Strain C25 and Acidocella sp. Strain C78, Acidophiles Isolated from Iron-Rich Pelagic Aggregates (Iron Snow). PMID:34165336
Sea-Ice Bacteria Halomonas sp. Strain 363 and Paracoccus sp. Strain 392 Produce Multiple Types of Poly-3-Hydroxyalkaonoic Acid (PHA) Storage Polymers at Low Temperature. PMID:34160268
Evolutionary, genomic, and biogeographic characterization of two novel xenobiotics-degrading strains affiliated with Dechloromonas. PMID:34159268
Gut microbiota mediate the FGF21 adaptive stress response to chronic dietary protein-restriction in mice. PMID:34158480
Identification of a phage-derived depolymerase specific for KL64 capsule of Klebsiella pneumoniae and its anti-biofilm effect. PMID:34156584
Isolation and characterization of lytic phage TUN1 specific for Klebsiella pneumoniae K64 clinical isolates from Tunisia. PMID:34154528
Methylobrevis albus sp. nov., isolated from freshwater lake sediment. PMID:34152426
A Single Nucleotide Polymorphism in lptG Increases Tolerance to Bile Salts, Acid, and Staining of Calcofluor-Binding Polysaccharides in Salmonella enterica Serovar Typhimurium E40. PMID:34149657
Cellulosimicrobium fucosivorans sp. nov., isolated from San Elijo Lagoon, contains a fucose metabolic pathway linked to carotenoid production. PMID:34148152
Pontibaca salina sp. nov., isolated from marine sediment. PMID:34148113
Role of AmpG in the resistance to β-lactam agents, including cephalosporins and carbapenems: candidate for a novel antimicrobial target. PMID:34134705
Population Analysis of Vibrio cholerae in Aquatic Reservoirs Reveals a Novel Sister Species (Vibrio paracholerae sp. nov.) with a History of Association with Humans. PMID:34132593
How water-soluble saccharides drive the metabolism of lactic acid bacteria during fermentation of brewers' spent grain. PMID:34132488
Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments. PMID:34127845
The Formation of Two Hybrid Plasmids Mediated by IS26 and Tn6952 in Salmonella enterica Serotype Enteritidis. PMID:34122390
Transcriptome Analysis Reveals Cr(VI) Adaptation Mechanisms in Klebsiella sp. Strain AqSCr. PMID:34122372
Genome analysis to decipher syntrophy in the bacterial consortium 'SCP' for azo dye degradation. PMID:34116639
Genome sequence of the epiphytic bacteria Bacillus altitudinis strain 19_A, isolated from the marine macroalga Ulva lactuca. PMID:34113548
Draft genome sequence data of Streptomyces sp. FH025. PMID:34095378
The Vaginal Microbial Signatures of Preterm Birth Delivery in Indian Women. PMID:34094994
Expanded Genomic Sampling Refines Current Understanding of the Distribution and Evolution of Sulfur Metabolisms in the Desulfobulbales. PMID:34093483
Azohydromonas caseinilytica sp. nov., a Nitrogen-Fixing Bacterium Isolated From Forest Soil by Using Optimized Culture Method. PMID:34093463
Cold-shock gene cspC in the genome of Massilia polaris sp. nov. revealed cold-adaptation. PMID:34091798
Isolation and Genomic Analysis of the Phage vB_PaeP_fHoPae04 Infecting Pseudomonas aeruginosa. PMID:34080897
Complete genome sequence of Arthrobacter sp. PAMC25564 and its comparative genome analysis for elucidating the role of CAZymes in cold adaptation. PMID:34078272
The reduced genome of a heritable symbiont from an ectoparasitic feather feeding louse. PMID:34078265
Analysis of genomes of bacterial isolates from lameness outbreaks in broilers. PMID:34077848
Mantis: flexible and consensus-driven genome annotation. PMID:34076241
Genome Reduction and Secondary Metabolism of the Marine Sponge-Associated Cyanobacterium Leptothoe. PMID:34073758
A Novel Broad Host Range Phage Infecting Alteromonas. PMID:34073246
Early Emergence of Dickeya solani Revealed by Analysis of Dickeya Diversity of Potato Blackleg and Soft Rot Causing Pathogens in Switzerland. PMID:34072830
Genomic Analysis of a Novel Phage Infecting the Turkey Pathogen Escherichia coli APEC O78 and Its Endolysin Activity. PMID:34072620
Novel Acinetobacter baumannii Myovirus TaPaz Encoding Two Tailspike Depolymerases: Characterization and Host-Recognition Strategy. PMID:34070371
Genomics and Virulence of Klebsiella pneumoniae Kpnu95 ST1412 Harboring a Novel Incf Plasmid Encoding Blactx-M-15 and Qnrs1 Causing Community Urinary Tract Infection. PMID:34068663
Unraveling a Lignocellulose-Decomposing Bacterial Consortium from Soil Associated with Dry Sugarcane Straw by Genomic-Centered Metagenomics. PMID:34063014
Characterization and description of Faecalibacterium butyricigenerans sp. nov. and F. longum sp. nov., isolated from human faeces. PMID:34059761
Cataloguing the bacterial diversity in the active ectomycorrhizal zone of Astraeus from a dry deciduous forest of Shorea. PMID:34054322
Rationally designed bacterial consortia to treat chronic immune-mediated colitis and restore intestinal homeostasis. PMID:34050144
Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions. PMID:34046017
Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences. PMID:34034663
Analysis of Genome Sequences of Coagulase-Negative Staphylococci Isolates from South Africa and Nigeria Highlighted Environmentally Driven Heterogeneity. PMID:34025805
Pararhizobium mangrovi sp. nov., Isolated From Aegiceras corniculatum Stem. PMID:34021370
Prevalence and relationship of endosymbiotic Wolbachia in the butterfly genus Erebia. PMID:34020585
Complete genome sequence of the newly discovered temperate Clostridioides difficile bacteriophage phiCDKH01 of the family Siphoviridae. PMID:34014385
Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions. PMID:34007059
Gut microbiome contributions to altered metabolism in a pig model of undernutrition. PMID:34001614
Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost. PMID:34001281
Regional Spread of blaNDM-1-Containing Klebsiella pneumoniae ST147 in Post-Acute Care Facilities. PMID:33999991
Kaustia mangrovi gen. nov., sp. nov. isolated from Red Sea mangrove sediments belongs to the recently proposed Parvibaculaceae family within the order Rhizobiales. PMID:33999795
Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines. PMID:33996285
Formation, characterization and modeling of emergent synthetic microbial communities. PMID:33995895
Comparative genomics analysis of Pediococcus acidilactici species. PMID:33990913
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts. PMID:33990699
Complete genome sequence of Escherichia coli K_EC180, a bacterium producing shiga-like toxin isolated from swine feces. PMID:33987619
Complete genome sequence of Lactococcus lactis strain K_LL005, a xylose-utilizing bacterium isolated from grasshopper (Oxya chinensis sinuosa). PMID:33987596
Genome analysis of Bacteroides sp.CACC 737 isolated from feline for its potential application. PMID:33987575
Draft Genome Sequence of Lignin-Degrading Agrobacterium sp. Strain S2, Isolated from a Decaying Oil Palm Empty Fruit Bunch. PMID:33986086
Genome Sequences of 17 Diverse Pseudomonas aeruginosa Phages. PMID:33986073
Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling. PMID:33981000
Inhibition of a nutritional endosymbiont by glyphosate abolishes mutualistic benefit on cuticle synthesis in Oryzaephilus surinamensis. PMID:33976379
JD419, a Staphylococcus aureus Phage With a Unique Morphology and Broad Host Range. PMID:33967969
Peteryoungia gen. nov. with four new species combinations and description of Peteryoungia desertarenae sp. nov., and taxonomic revision of the genus Ciceribacter based on phylogenomics of Rhizobiaceae. PMID:33966089
Elucidation of trophic interactions in an unusual single-cell nitrogen-fixing symbiosis using metabolic modeling. PMID:33961619
Draft Genome Sequences of Three Multidrug-Resistant Staphylococcus spp. Isolated from Hospital Wastewater in Malaysia. PMID:33958405
Sphingobacterium phlebotomi sp. nov., a new member of family Sphingobacteriaceae isolated from sand fly rearing substrate. PMID:33956595
Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria. PMID:33953365
The Thermosynechococcus Genus: Wide Environmental Distribution, but a Highly Conserved Genomic Core. PMID:33952861
Predicted Metabolic Function of the Gut Microbiota of Drosophila melanogaster. PMID:33947801
Genomics of Staphylococcus aureus ocular isolates. PMID:33939761
Plant Growth Promoting Potentials of Beneficial Endophytic Escherichia coli USML2 in Association with Rice Seedlings. PMID:33936555
On-Farm Anaerobic Digestion of Dairy Manure Reduces the Abundance of Antibiotic Resistance-Associated Gene Targets and the Potential for Plasmid Transfer. PMID:33931422
Closed and High-Quality Bacterial Genome Sequences of the Oligo-Mouse-Microbiota Community. PMID:33927045
Genome-Wide Analysis of PL7 Alginate Lyases in the Genus Zobellia. PMID:33924031
In Vitro Activity of a Novel Siderophore-Cephalosporin LCB10-0200 (GT-1), and LCB10-0200/Avibactam, against Carbapenem-Resistant Escherichia coli, Klebsiella pneumoniae, Acinetobacter baumannii, and Pseudomonas aeruginosa Strains at a Tertiary Hospital in Korea. PMID:33923801
A Novel Marine Pathogen Isolated from Wild Cunners (Tautogolabrus adspersus): Comparative Genomics and Transcriptome Profiling of Pseudomonas sp. Strain J380. PMID:33921528
The Development of Bacteriophage Resistance in Vibrio alginolyticus Depends on a Complex Metabolic Adaptation Strategy. PMID:33920240
Isolation and Characterization of Strain Exiguobacterium sp. KRL4, a Producer of Bioactive Secondary Metabolites from a Tibetan Glacier. PMID:33919419
Novel Virulent Bacteriophages Infecting Mediterranean Isolates of the Plant Pest Xylella fastidiosa and Xanthomonas albilineans. PMID:33919362
A Novel Structure Harboring blaCTX-M-27 on IncF Plasmids in Escherichia coli Isolated from Swine in China. PMID:33916584
Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields. PMID:33911103
Litoribacterium kuwaitense gen. nov., sp. nov., isolated from a Kuwait tidal flat. PMID:33909547
Genomic insights into the molecular mechanisms of a Pseudomonas strain significant in its survival in Kongsfjorden, an Arctic fjord. PMID:33909166
Accessory Genome Dynamics and Structural Variation of Shigella from Persistent Infections. PMID:33906921
Whole genome-based characterisation of antimicrobial resistance and genetic diversity in Campylobacter jejuni and Campylobacter coli from ruminants. PMID:33903652
Genome-centric resolution of novel microbial lineages in an excavated Centrosaurus dinosaur fossil bone from the Late Cretaceous of North America. PMID:33902738
Microbial mats in the Turks and Caicos Islands reveal diversity and evolution of phototrophy in the Chloroflexota order Aggregatilineales. PMID:33902735
Colistin-Resistant mcr-1-Positive Escherichia coli ST131-H22 Carrying bla CTX-M-15 and qnrB19 in Agricultural Soil. PMID:33897674
Genomic Insight of Alicyclobacillus mali FL18 Isolated From an Arsenic-Rich Hot Spring. PMID:33897644
Biodiversity-based development and evolution: the emerging research systems in model and non-model organisms. PMID:33893979
Alterinioella nitratireducens gen. nov., sp. nov., Isolated from Seawater in the West Pacific Ocean. PMID:33893528
Draft genome sequence of Lactobacillus delbrueckii subsp. bulgaricus LBP UFSC 2230: a tool for preliminary identification of enzymes involved in CLA metabolism. PMID:33891284
Metaproteogenomic Profiling of Chemosynthetic Microbial Biofilms Reveals Metabolic Flexibility During Colonization of a Shallow-Water Gas Vent. PMID:33889140
Genome Sequence of Lactiplantibacillus plantarum DmPark25_157, a Bacterial Strain Isolated from Drosophila melanogaster. PMID:33888509
An alternative resource allocation strategy in the chemolithoautotrophic archaeon Methanococcus maripaludis. PMID:33879571
Pikeienuella piscinae gen. nov., sp. nov., a novel genus in the family Rhodobacteraceae. PMID:33877579
A Tail Fiber Protein and a Receptor-Binding Protein Mediate ICP2 Bacteriophage Interactions with Vibrio cholerae OmpU. PMID:33875544
Two Novel Bacteriophages Control Multidrug- and Methicillin-Resistant Staphylococcus pseudintermedius Biofilm. PMID:33869236
Lyophilized alginate-based microspheres containing Lactobacillus fermentum D12, an exopolysaccharides producer, contribute to the strain's functionality in vitro. PMID:33865380
Integrated Genomic and Greenhouse Assessment of a Novel Plant Growth-Promoting Rhizobacterium for Tomato Plant. PMID:33859664
Complete Genome Sequence of Campylobacter coli Bacteriophage CAM-P21. PMID:33858930
Genomic characterization of a polyvalent hydrocarbonoclastic bacterium Pseudomonas sp. strain BUN14. PMID:33854112
Complete Genetic Analysis of Plasmids Carrying mcr-1 and Other Resistance Genes in Avian Pathogenic Escherichia coli Isolates from Diseased Chickens in Anhui Province in China. PMID:33853876
Microbial community characterization of shrimp survivors to AHPND challenge test treated with an effective shrimp probiotic (Vibrio diabolicus). PMID:33845910
In silico approach to understand the epigenetic mechanism of SARS-CoV-2 and its impact on the environment. PMID:33842674
Draft Genome of Proteus mirabilis Serogroup O18 Elaborating Phosphocholine-Decorated O Antigen. PMID:33842384
Genomic Analysis of Staphylococcus aureus of the Lineage CC130, Including mecC-Carrying MRSA and MSSA Isolates Recovered of Animal, Human, and Environmental Origins. PMID:33841383
Multiple concurrent and convergent stages of genome reduction in bacterial symbionts across a stink bug family. PMID:33833268
Draft Genome Sequences of Avian Chlamydia abortus Genotype G2 Strain 15-49d3, Isolated from Mallard, and Genotype 1V Strain 15-58d44, Isolated from Magpie in Poland. PMID:33833029
Metabolic capabilities mute positive response to direct and indirect impacts of warming throughout the soil profile. PMID:33828081
Evolutionary stasis of a deep subsurface microbial lineage. PMID:33824425
Antimicrobial Susceptibility and Genomic Analysis of Aliarcobacter cibarius and Aliarcobacter thereius, Two Rarely Detected Aliarcobacter Species. PMID:33816322
Engineering Vibrio sp. SP1 for the production of carotenoids directly from brown macroalgae. PMID:33815690
Aerobic Denitrification and Heterotrophic Sulfur Oxidation in the Genus Halomonas Revealed by Six Novel Species Characterizations and Genome-Based Analysis. PMID:33815342
A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T. PMID:33811026
Bacterial Dimethylsulfoniopropionate Biosynthesis in the East China Sea. PMID:33810191
From Laboratory towards Industrial Operation: Biomarkers for Acidophilic Metabolic Activity in Bioleaching Systems. PMID:33806162
Diversity and Physiological Characteristics of Antarctic Lichens-Associated Bacteria. PMID:33804278
A Genome-Scale Metabolic Model of Anabaena 33047 to Guide Genetic Modifications to Overproduce Nylon Monomers. PMID:33804103
Functional Annotation Genome Unravels Potential Probiotic Bacillus velezensis Strain KMU01 from Traditional Korean Fermented Kimchi. PMID:33803098
Genome-based classification of the Streptomyces violaceusniger clade and description of Streptomyces sabulosicollis sp. nov. from an Indonesian sand dune. PMID:33797685
Draft Genome Sequences of 3 Strains of Apilactobacillus kunkeei Isolated from the Bee Gut Microbial Community. PMID:33795338
Draft genome sequence of a nontypeable Haemophilus influenzae strain used in the study of human respiratory infection. PMID:33794985
Relevance of FeoAB system in Rhodanobacter sp. B2A1Ga4 resistance to heavy metals, aluminium, gallium, and indium. PMID:33791837
The insect-killing bacterium Photorhabdus luminescens has the lowest mutation rate among bacteria. PMID:33791681
Methylobacterium ajmalii sp. nov., Isolated From the International Space Station. PMID:33790880
Emergence of IMP-8-Producing Comamonas thiooxydans Causing Urinary Tract Infection in China. PMID:33790873
LuxR Solos from Environmental Fluorescent Pseudomonads. PMID:33789944
CODON-Software to manual curation of prokaryotic genomes. PMID:33788829
Taxonomic and Enzymatic Characterization of Flocculibacter collagenilyticus gen. nov., sp. nov., a Novel Gammaproteobacterium With High Collagenase Production. PMID:33786038
Two-step functional screen on multiple proteinaceous substrates reveals temperature-robust proteases with a broad-substrate range. PMID:33770243
Fresh Crab Plays an Important Role as a Nutrient Reservoir for the Rapid Propagation of Vibrio vulnificus. PMID:33767684
Complete Genome Sequence of Campylobacter hepaticus Strain UF2019SK1, Isolated from a Commercial Layer Flock in the United States. PMID:33766908
Complete Genome Analysis of Flavobacterium psychrophilum Strain FPRT1, Isolated from Diseased Rainbow Trout (Oncorhynchus mykiss) in South Korea. PMID:33766901
Comparative in silico genome analysis of Clostridium perfringens unravels stable phylogroups with different genome characteristics and pathogenic potential. PMID:33762628
Iodidimonas gelatinilytica sp. nov., aerobic iodide-oxidizing bacteria isolated from brine water and surface seawater. PMID:33761033
Genome-resolved metagenomics using environmental and clinical samples. PMID:33758906
Genome insight and description of antibiotic producing Massilia antibiotica sp. nov., isolated from oil-contaminated soil. PMID:33758279
Marinobacter orientalis sp. nov., a thiosulfate-oxidizing bacterium isolated from a marine solar saltern. PMID:33751321
Field evaluation of PGP Bacillus sp. strain D5 native to Crocus sativus, in traditional and non traditional areas, and mining of PGP genes from its genome. PMID:33750799
Genome analyses of 174 strains of Mycobacterium tuberculosis provide insight into the evolution of drug resistance and reveal potential drug targets. PMID:33750515
Subtelomeres are fast-evolving regions of the Streptomyces linear chromosome. PMID:33749576
Combined characterization of a new member of Marivita cryptomonadis strain LZ-15-2 isolated from cultivable phycosphere microbiota of highly toxic HAB dinoflagellate Alexandrium catenella LZT09. PMID:33742357
Stable Recombinant-Gene Expression from a Ligilactobacillus Live Bacterial Vector via Chromosomal Integration. PMID:33741626
Genome Sequence of Clostridium sp. Strain P21, a CO-Fermenting Acetogen Isolated from Old Hay. PMID:33737364
MultiPhATE2: code for functional annotation and comparison of phage genomes. PMID:33734357
Phenotypic and Genomic Profiling of Staphylococcus argenteus in Canada and the United States and Recommendations for Clinical Result Reporting. PMID:33731414
Clinical and genomic features of Corynebacterium macginleyi-associated infectious keratitis. PMID:33727638
Full pathogen characterisation: species identification including the detection of virulence factors and antibiotic resistance genes via multiplex DNA-assays. PMID:33727586
Carotenoids produced by the deep-sea bacterium Erythrobacter citreus LAMA 915: detection and proposal of their biosynthetic pathway. PMID:33723710
Clinical Experience of Personalized Phage Therapy Against Carbapenem-Resistant Acinetobacter baumannii Lung Infection in a Patient With Chronic Obstructive Pulmonary Disease. PMID:33718279
Characterization of Sulfurimonas hydrogeniphila sp. nov., a Novel Bacterium Predominant in Deep-Sea Hydrothermal Vents and Comparative Genomic Analyses of the Genus Sulfurimonas. PMID:33717015
Genomic Characterization of Two Shiga Toxin-Converting Bacteriophages Induced From Environmental Shiga Toxin-Producing Escherichia coli. PMID:33716997
Lactobacillus paracasei DTA81, a cholesterol-lowering strain having immunomodulatory activity, reveals gut microbiota regulation capability in BALB/c mice receiving high-fat diet. PMID:33709536
Pseudomonas aeruginosa PA80 is a cystic fibrosis isolate deficient in RhlRI quorum sensing. PMID:33707533
De novo genome assembly of Bacillus altitudinis 19RS3 and Bacillus altitudinis T5S-T4, two plant growth-promoting bacteria isolated from Ilex paraguariensis St. Hil. (yerba mate). PMID:33705487
Taxonomic Description and Genome Sequence of Christensenella intestinihominis sp. nov., a Novel Cholesterol-Lowering Bacterium Isolated From Human Gut. PMID:33692769
Discovery of a Novel Lineage Burkholderia cepacia ST 1870 Endophytically Isolated from Medicinal Polygala paniculata Which Shows Potent In Vitro Antileishmanial and Antimicrobial Effects. PMID:33679984
Insights into the genomic repertoire of Aquimarina litoralis CCMR20, a symbiont of coral Mussismilia braziliensis. PMID:33675372
Comparative Genomic Analysis of Three Pseudomonas Species Isolated from the Eastern Oyster (Crassostrea virginica) Tissues, Mantle Fluid, and the Overlying Estuarine Water Column. PMID:33673397
From Data Mining of Chitinophaga sp. Genome to Enzyme Discovery of a Hyperthermophilic Metallocarboxypeptidase. PMID:33673011
Investigation of the Physiology of the Obligate Alkaliphilic Bacillus marmarensis GMBE 72T Considering Its Alkaline Adaptation Mechanism for Poly(3-hydroxybutyrate) Synthesis. PMID:33672214
Induction and Genome Analysis of HY01, a Newly Reported Prophage from an Emerging Shrimp Pathogen Vibrio campbellii. PMID:33671959
Examination of Staphylococcus aureus Prophages Circulating in Egypt. PMID:33671574
T4-like Bacteriophages Isolated from Pig Stools Infect Yersinia pseudotuberculosis and Yersinia pestis Using LPS and OmpF as Receptors. PMID:33668618
Complete Genome Sequence of Staphylococcus epidermidis PH1-28, Isolated from the Forehead of a Hyperseborrheic Donor. PMID:33664152
Draft Genome Sequences of 28 Actinobacteria of the Family Microbacteriaceae Associated with Nematode-Infected Plants. PMID:33664138
Establishment of a Cuscuta campestris-mediated enrichment system for genomic and transcriptomic analyses of 'Candidatus Liberibacter asiaticus'. PMID:33655703
Exploring Antibiotic Resistance Diversity in Leuconostoc spp. by a Genome-Based Approach: Focus on the lsaA Gene. PMID:33652718
Genomic analysis revealed a novel genotype of methicillin-susceptible Staphylococcus aureus isolated from a fatal sepsis case in dengue patient. PMID:33649330
Lytic bacteriophages facilitate antibiotic sensitization of Enterococcus faecium. PMID:33649110
Complete Genome Sequence of Pedobacter sp. PAMC26386 and Their Low Temperature Application in Arabinose-containing Polysaccharides Degradation. PMID:33638002
Isolation and Characterization of a Novel Phage SaGU1 that Infects Staphylococcus aureus Clinical Isolates from Patients with Atopic Dermatitis. PMID:33638001
High Prevalence and Mechanism Associated With Extended Spectrum Beta-Lactamase-Positive Phenotype in Laribacter hongkongensis. PMID:33633706
Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir). PMID:33632861
Grimontia sedimenti sp. nov., isolated from benthic sediments near coral reefs south of Kuwait. PMID:33629941
Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections. PMID:33596852
Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. PMID:33595745
Genome-wide genetic marker analysis and genotyping of Escherichia fergusonii strain OTSVEF-60. PMID:33591555
cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets. PMID:33588753
Streptomyces sp. M54: an actinobacteria associated with a neotropical social wasp with high potential for antibiotic production. PMID:33587228
Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae. PMID:33585960
Comparison of Alginate Utilization Pathways in Culturable Bacteria Isolated From Arctic and Antarctic Marine Environments. PMID:33584613
Functional metagenomics reveals differential chitin degradation and utilization features across free-living and host-associated marine microbiomes. PMID:33583433
Genomic diversity and organization of complex polysaccharide biosynthesis clusters in the genus Dickeya. PMID:33571209
Diversification of OmpA and OmpF of Yersinia ruckeri is independent of the underlying species phylogeny and evidence of virulence-related selection. PMID:33568758
Systematic Detection of Large-Scale Multigene Horizontal Transfer in Prokaryotes. PMID:33565580
Deciphering a Marine Bone-Degrading Microbiome Reveals a Complex Community Effort. PMID:33563781
Genome analysis of Salmonella enterica serovar Typhimurium bacteriophage L, indicator for StySA (StyLT2III) restriction-modification system action. PMID:33561243
Metagenomic insights into the effect of sulfate on enhanced biological phosphorus removal. PMID:33555362
Degradation of 1,4-Dioxane by Xanthobacter sp. YN2. PMID:33547937
Whole-genome analyses of extended-spectrum or AmpC β-lactamase-producing Escherichia coli isolates from companion dogs in Japan. PMID:33544781
Neobacillus sedimentimangrovi sp. nov., a Thermophilic Bacterium Isolated from Mangrove Sediment. PMID:33543358
Genome annotation of disease-causing microorganisms. PMID:33537706
Deciphering the Potential of Rhizobium pusense MB-17a, a Plant Growth-Promoting Root Endophyte, and Functional Annotation of the Genes Involved in the Metabolic Pathway. PMID:33537293
Genomic Insights Into the Lifestyles of Thaumarchaeota Inside Sponges. PMID:33537022
A Sarcina bacterium linked to lethal disease in sanctuary chimpanzees in Sierra Leone. PMID:33536429
Pathogenomic analyses of Mycobacterium microti, an ESX-1-deleted member of the Mycobacterium tuberculosis complex causing disease in various hosts. PMID:33529148
Complete Genome Sequences of Chesapeake Bay Synechococcus Strains CBW1002 and CBW1006 Isolated in Winter. PMID:33528491
Genome-wide comparison of four MRSA clinical isolates from Germany and Hungary. PMID:33520430
Genomic Insights Into the Antifungal Activity and Plant Growth-Promoting Ability in Bacillus velezensis CMRP 4490. PMID:33519779
Gemmatimonas groenlandica sp. nov. Is an Aerobic Anoxygenic Phototroph in the Phylum Gemmatimonadetes. PMID:33519753
Isolation, Biochemical and Genomic Characterization of Glyphosate Tolerant Bacteria to Perform Microbe-Assisted Phytoremediation. PMID:33519737
Distribution of Beta-Lactamase Producing Gram-Negative Bacterial Isolates in Isabela River of Santo Domingo, Dominican Republic. PMID:33519720
An arsRB resistance operon confers tolerance to arsenite in the environmental isolate Terribacillus sp. AE2B 122. PMID:33512483
Increasing New Delhi metallo-β-lactamase-positive Escherichia coli among carbapenem non-susceptible Enterobacteriaceae in Taiwan during 2016 to 2018. PMID:33510280
Draft Genome Sequences of a Bacillus subtilis Strain, a Bacillus velezensis Strain, a Paenibacillus Strain, and an Acinetobacter baumannii Strain, All Isolated from the Phyllosphere of Lactuca sativa or Solanum lycopersicum. PMID:33509984
Genome sequencing and analysis of plant growth-promoting attributes from Leclercia adecarboxylata. PMID:33503198
Desert Environments Facilitate Unique Evolution of Biosynthetic Potential in Streptomyces. PMID:33499369
Characterization of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Isolates from Jurong Lake, Singapore with Whole-Genome-Sequencing. PMID:33499011
Designing P. aeruginosa synthetic phages with reduced genomes. PMID:33495501
Isolation and Characterization of Enterococcus faecalis-Infecting Bacteriophages From Different Cheese Types. PMID:33488539
Genomic and Phenotypic Insights Into the Potential of Rock Phosphate Solubilizing Bacteria to Promote Millet Growth in vivo. PMID:33488531
Antibiotic resistance plasmid composition and architecture in Escherichia coli isolates from meat. PMID:33483623
The effectiveness of treating irrigation water using ultraviolet radiation or sulphuric acid fertilizer for reducing generic Escherichia coli on fresh produce-a controlled intervention trial. PMID:33482030
MinION Nanopore-based detection of Clavibacter nebraskensis, the corn Goss's wilt pathogen, and bacteriomic profiling of necrotic lesions of naturally-infected leaf samples. PMID:33481876
Genomic analysis of a novel species Halomonas shambharensis isolated from hypersaline lake in Northwest India. PMID:33479827
Genomic Features of MCR-1 and Extended-Spectrum β-Lactamase-Producing Enterobacterales from Retail Raw Chicken in Egypt. PMID:33477851
Genome-Based Analyses of Fitness Effects and Compensatory Changes Associated with Acquisition of bla CMY-, bla CTX-M-, and bla OXA-48/VIM-1-Containing Plasmids in Escherichia coli. PMID:33477799
Core and Accessory Genome Analysis of Vibrio mimicus. PMID:33477474
Diagnostic approach for detection and identification of emerging enteric pathogens revisited: the (Ali)arcobacter lanthieri case. PMID:33473321
Continuous Genomic Surveillance Monitored the In Vivo Evolutionary Trajectories of Vibrio parahaemolyticus and Identified a New Virulent Genotype. PMID:33468708
Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. PMID:33467086
Screening for Microbial Metal-Chelating Siderophores for the Removal of Metal Ions from Solutions. PMID:33466508
Bruguierivorax albus gen. nov. sp. nov. Isolated from Mangrove Sediment and Proposal of Bruguierivoracaceae fam. nov. PMID:33464391
Genome analysis of a halophilic bacterium Halomonas malpeensis YU-PRIM-29T reveals its exopolysaccharide and pigment producing capabilities. PMID:33462335
Dual Inhibition of Salmonella enterica and Clostridium perfringens by New Probiotic Candidates Isolated from Chicken Intestinal Mucosa. PMID:33451155
Genomic insight into a novel actinobacterium, Actinomadura rubrisoli sp. nov., reveals high potential for bioactive metabolites. PMID:33449222
Complete Genome Sequence of Halomonas sp. Strain SH5A2, a Dye-Degrading Halotolerant Bacterium Isolated from the Salinas and Aguada Blanca National Reserve in Peru. PMID:33446584
Draft Genome Sequence of Pseudomonas sp. Strain FEN, Isolated from the Fe- and Organic Matter-Rich Schlöppnerbrunnen Fen. PMID:33446583
Dynamics and Microevolution of Vibrio parahaemolyticus Populations in Shellfish Farms. PMID:33436516
ActDES - a curated Actinobacterial Database for Evolutionary Studies. PMID:33433310
Whole genome sequencing of coagulase positive staphylococci from a dog-and-owner screening survey. PMID:33428679
Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues. PMID:33422151
Draft Genome Sequence of Streptomyces sp. Isolate H28 from the Meycauayan River, Philippines. PMID:33414351
Genome Sequence of Hymenobacter polaris RP-2-7T, Isolated from Arctic Soil. PMID:33414337
Draft Genome Sequence of Terrestrial Streptomyces sp. Strain VITNK9, Isolated from Vellore, Tamil Nadu, India, Exhibiting Antagonistic Activity against Fish Pathogens. PMID:33414310
Draft Genome Sequence of Pseudomonas sp. Strain T2.31D-1, Isolated from a Drilling Core Sample Obtained 414 Meters below Surface in the Iberian Pyrite Belt. PMID:33414307
Genome Sequence of Acetobacter tropicalis DmPark25_167, a Bacterium Isolated from a Drosophila melanogaster Genetic Model of Parkinson's Disease. PMID:33414300
In silico comparative analysis of Aeromonas Type VI Secretion System. PMID:33410103
Application of a Novel Lytic Podoviridae Phage Pu20 for Biological Control of Drug-Resistant Salmonella in Liquid Eggs. PMID:33406779
A type VII secretion system of Streptococcus gallolyticus subsp. gallolyticus contributes to gut colonization and the development of colon tumors. PMID:33406160
Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen. PMID:33406073
Rapid Increase in the IS26-Mediated cfr Gene in E. coli Isolates with IncP and IncX4 Plasmids and Co-Existing cfr and mcr-1 Genes in a Swine Farm. PMID:33401636
AhaP, A Quorum Quenching Acylase from Psychrobacter sp. M9-54-1 That Attenuates Pseudomonas aeruginosa and Vibrio coralliilyticus Virulence. PMID:33401388
Comparative and Functional Analyses of Two Sequenced Paenibacillus polymyxa Genomes Provides Insights Into Their Potential Genes Related to Plant Growth-Promoting Features and Biocontrol Mechanisms. PMID:33391337
Emergence and Spread of Different ESBL-Producing Salmonella enterica Serovars in Hospitalized Horses Sharing a Highly Transferable IncM2 CTX-M-3-Encoding Plasmid. PMID:33391248
Long-Chain Fatty Acids Degradation by Desulfomonile Species and Proposal of "Candidatus Desulfomonile Palmitatoxidans". PMID:33391191
Whole Genome Sequence-Based Prediction of Resistance Determinants in High-Level Multidrug-Resistant Campylobacter jejuni Isolates in Lithuania. PMID:33383765
Isolation and Characterization of Salmonella Jumbo-Phage pSal-SNUABM-04. PMID:33375688
Genomic Insight into Pediococcus acidilactici HN9, a Potential Probiotic Strain Isolated from the Traditional Thai-Style Fermented Beef Nhang. PMID:33375492
Osmotic Adaptation and Compatible Solute Biosynthesis of Phototrophic Bacteria as Revealed from Genome Analyses. PMID:33375353
Evolution of Wolbachia mutualism and reproductive parasitism: insight from two novel strains that co-infect cat fleas. PMID:33362982
Isolation and Taxonomic Characterization of Novel Haloarchaeal Isolates From Indian Solar Saltern: A Brief Review on Distribution of Bacteriorhodopsins and V-Type ATPases in Haloarchaea. PMID:33362726
Interplay among Different Fosfomycin Resistance Mechanisms in Klebsiella pneumoniae. PMID:33361305
Dissemination of Extended-Spectrum-β-Lactamase-Producing Enterobacter cloacae Complex from a Hospital to the Nearby Environment in Guadeloupe (French West Indies): ST114 Lineage Coding for a Successful IncHI2/ST1 Plasmid. PMID:33361294
Staphylococcal Enterotoxin Gene Cluster: Prediction of Enterotoxin (SEG and SEI) Production and of the Source of Food Poisoning on the Basis of vSaβ Typing. PMID:33355100
Assessing the Multivariate Relationship between the Human Infant Intestinal Exfoliated Cell Transcriptome (Exfoliome) and Microbiome in Response to Diet. PMID:33353204
Complete genome reveals genetic repertoire and potential metabolic strategies involved in lignin degradation by environmental ligninolytic Klebsiella variicola P1CD1. PMID:33351813
Identification of a Candidate Starch Utilizing Strain of Prevotella albensis from Bovine Rumen. PMID:33339094
Phylogenomic analysis of Clostridioides difficile ribotype 106 strains reveals novel genetic islands and emergent phenotypes. PMID:33335199
Stress Response of Mesosutterella multiformis Mediated by Nitrate Reduction. PMID:33333944
Discovery of Euryhaline Phycoerythrobilin-Containing Synechococcus and Its Mechanisms for Adaptation to Estuarine Environments. PMID:33323414
Soehngenia longivitae sp. nov., a Fermenting Bacterium Isolated from a Petroleum Reservoir in Azerbaijan, and Emended Description of the Genus Soehngenia. PMID:33322329
A horizontally acquired expansin gene increases virulence of the emerging plant pathogen Erwinia tracheiphila. PMID:33303810
Draft Genome Sequence of the Multiple Antibiotic Producer Bacillus velezensis X-BIO-1. PMID:33303675
Escherichia coli Serotype O157:H7 PA20R2R Complete Genome Sequence. PMID:33303666
Mutation of hilD in a Salmonella Derby lineage linked to swine adaptation and reduced risk to human health. PMID:33299016
Simultaneous Genome Sequencing of Prosthecochloris ethylica and Desulfuromonas acetoxidans within a Syntrophic Mixture Reveals Unique Pili and Protein Interactions. PMID:33297414
Diminutive, degraded but dissimilar: Wolbachia genomes from filarial nematodes do not conform to a single paradigm. PMID:33295865
Comparative genome analyses of Mycobacteroides immunogenum reveals two potential novel subspecies. PMID:33295861
Respiratory tissue-associated commensal bacteria offer therapeutic potential against pneumococcal colonization. PMID:33287959
L-Arginine Enhances Intracellular Killing of Carbapenem-Resistant Klebsiella pneumoniae ST258 by Murine Neutrophils. PMID:33282749
Genome Sequence of the Unusual Purple Photosynthetic Bacterium Phaeovibrio sulfidiphilus, Only Distantly Related to Rhodospirillaceae, Reveals Unique Genes for Respiratory Nitrate Reduction and Glycerol Metabolism. PMID:33273003
Specific Interaction of Novel Friunavirus Phages Encoding Tailspike Depolymerases with Corresponding Acinetobacter baumannii Capsular Types. PMID:33268523
Reconstructing Genomes of Carbon Monoxide Oxidisers in Volcanic Deposits Including Members of the Class Ktedonobacteria. PMID:33260993
Identification of the Gene Responsible for Lignin-Derived Low-Molecular-Weight Compound Catabolism in Pseudomonas sp. Strain LLC-1. PMID:33260964
Unlocking Survival Mechanisms for Metal and Oxidative Stress in the Extremely Acidophilic, Halotolerant Acidihalobacter Genus. PMID:33255299
Altererythrobacter segetis sp. nov., Isolated from Farmland Soil. PMID:33252774
Sequence Analysis of a Jumbo Bacteriophage, Xoo-sp14, That Infects Xanthomonas oryzae pv. oryzae. PMID:33239465
Genomic data of two Bacillus and two Pseudomonas strains isolated from the acid mine drainage site at Mamut Copper Mine, Ranau, Malaysia. PMID:33225029
Characterization of Clinical and Carrier Streptococcus agalactiae and Prophage Contribution to the Strain Variability. PMID:33217933
Genomic Insights into the Fish-Pathogenic Mycobacterium pseudoshottsii Strain AR Recovered from Meagre (Argyrosomus regius). PMID:33214304
Anaerobic bacterial degradation of protein and lipid macromolecules in subarctic marine sediment. PMID:33208892
Insights into the Metabolism and Evolution of the Genus Acidiphilium, a Typical Acidophile in Acid Mine Drainage. PMID:33203689
Carbapenem Resistant Aeromonas hydrophila Carrying bla cphA7 Isolated From Two Solid Organ Transplant Patients. PMID:33194801
In vitro Type II Restriction of Bacteriophage DNA With Modified Pyrimidines. PMID:33193286
Genome Characterization of a Novel Wastewater Bacteroides fragilis Bacteriophage (vB_BfrS_23) and its Host GB124. PMID:33193224
The Effect of Iodine-Containing Nano-Micelles, FS-1, on Antibiotic Resistance, Gene Expression and Epigenetic Modifications in the Genome of Multidrug Resistant MRSA Strain Staphylococcus aureus ATCC BAA-39. PMID:33193215
Fungal-bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds. PMID:33184402
Genomic analysis of Bacillus cereus NWUAB01 and its heavy metal removal from polluted soil. PMID:33184305
Prevalence and Genomic Characterization of Brucella canis Strains Isolated from Kennels, Household, and Stray Dogs in Chile. PMID:33182313
Characterization of a Novel NDM-5-Harboring Plasmid from a Carbapenem-Resistant Escherichia coli Isolate from China. PMID:33173318
Aquimarina sp. Associated With a Cuticular Disease of Cultured Larval Palinurid and Scyllarid Lobsters. PMID:33162955
Nitrate Respiration in Thermus thermophilus NAR1: from Horizontal Gene Transfer to Internal Evolution. PMID:33158244
Genomic sequencing of two isolates of Ralstonia solanacearum causing Sergipe facies and comparative analysis with Bugtok disease isolates. PMID:33156891
Draft Genome Sequences of Pantoea agglomerans Strains BD1274 and BD1212, Isolated from Onion Seeds, Reveal Major Differences in Pathogenicity and Functional Genes. PMID:33154020
Genome mining and UHPLC-QTOF-MS/MS to identify the potential antimicrobial compounds and determine the specificity of biosynthetic gene clusters in Bacillus subtilis NCD-2. PMID:33153447
Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant. PMID:33151992
Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum. PMID:33150080
Isolation and evolutionary analyses of porcine epidemic diarrhea virus in Asia. PMID:33150069
Functional characterization of quorum sensing LuxR-type transcriptional regulator, EasR in Enterobacter asburiae strain L1. PMID:33150063
Discovering the Molecular Determinants of Phaeobacter inhibens Susceptibility to Phaeobacter Phage MD18. PMID:33148823
Sphingomonas xanthus sp. nov., Isolated from Beach Soil. PMID:33146742
Integrated into Environmental Biofilm Chromobacterium vaccinii Survives Winter with Support of Bacterial Community. PMID:33143246
Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation. PMID:33137082
Bryophytes Harbor Cultivable Actinobacteria With Plant Growth Promoting Potential. PMID:33133038
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes. PMID:33125079
Identification and Characterization of New Bacteriophages to Control Multidrug-Resistant Pseudomonas aeruginosa Biofilm on Endotracheal Tubes. PMID:33123112
Contribution of Podoviridae and Myoviridae bacteriophages to the effectiveness of anti-staphylococcal therapeutic cocktails. PMID:33122703
Genome Sequence of Clinical Strain Pseudomonas aeruginosa NRD619. PMID:33122414
Genome Sequences of Four Strains of Acinetobacter bereziniae Isolated from Human Milk Pumped with a Personal Breast Pump and Hand-Washed Milk Collection Supplies. PMID:33122407
Comparative Genomics Analysis of Vibrio anguillarum Isolated from Lumpfish (Cyclopterus lumpus) in Newfoundland Reveal Novel Chromosomal Organizations. PMID:33121102
Selection of Immunobiotic Ligilactobacillus salivarius Strains from the Intestinal Tract of Wakame-Fed Pigs: Functional and Genomic Studies. PMID:33114778
Genomics and Proteomics Analyses Revealed Novel Candidate Pesticidal Proteins in a Lepidopteran-Toxic Bacillus thuringiensis Strain. PMID:33114565
Characterization and Therapeutic Potential of Bacteriophage-Encoded Polysaccharide Depolymerases with β Galactosidase Activity against Klebsiella pneumoniae K57 Capsular Type. PMID:33113762
Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae. PMID:33109078
The direct and indirect effects of environmental toxicants on the health of bumblebees and their microbiomes. PMID:33109012
Diverse Horizontally-Acquired Gene Clusters Confer Sucrose Utilization to Different Lineages of the Marine Pathogen Photobacterium damselae subsp. damselae. PMID:33105683
Whole genome sequencing data of a clinical Enterococcus gallinarum strain EGR748 from Sabah, Malaysia. PMID:33102652
Whole genome sequence of Serratia marcescens 39_H1, a potential hydrolytic and acidogenic strain. PMID:33102161
Temperate Bacteriophages (Prophages) in Pseudomonas aeruginosa Isolates Belonging to the International Cystic Fibrosis Clone (CC274). PMID:33101229
High-quality genome sequence assembly of R.A73 Enterococcus faecium isolated from freshwater fish mucus. PMID:33096980
Co-cultivation of microbial sub-communities in microfluidic droplets facilitates high-resolution genomic dissection of microbial 'dark matter'. PMID:33089329
Colonization of a hand washing sink in a veterinary hospital by an Enterobacter hormaechei strain carrying multiple resistances to high importance antimicrobials. PMID:33087168
Draft genome sequence data of Erysipelothrix rhusiopathiae vaccine strain VR-2. PMID:33083506
Protein structure, amino acid composition and sequence determine proteome vulnerability to oxidation-induced damage. PMID:33073387
A Novel bla CTX-M-65-Harboring IncHI2 Plasmid pE648CTX-M-65 Isolated from a Clinical Extensively-Drug-Resistant Escherichia coli ST648. PMID:33061485
Spirochetes isolated from arthropods constitute a novel genus Entomospira genus novum within the order Spirochaetales. PMID:33051478
RBUD: A New Functional Potential Analysis Approach for Whole Microbial Genome Shotgun Sequencing. PMID:33050530
Sphingopyxis sp. Strain OPL5, an Isoprene-Degrading Bacterium from the Sphingomonadaceae Family Isolated from Oil Palm Leaves. PMID:33050387
Genomic Analysis of two NDM-1 Providencia stuartii Strains Recovered from a Single Patient. PMID:33048176
Descriptions of Roseiconus nitratireducens gen. nov. sp. nov. and Roseiconus lacunae sp. nov. PMID:33047175
Coexistence of bla OXA-58 and tet(X) on a Novel Plasmid in Acinetobacter sp. From Pig in Shanghai, China. PMID:33042094
Characterization of a New Transposon, Tn6696, on a bla NDM- 1-Carrying Plasmid From Multidrug-Resistant Enterobacter cloacae ssp. dissolvens in China. PMID:33042048
Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization. PMID:33037214
Complete Genome Sequence of Lactococcus lactis subsp. lactis G121, an Isolate with Allergy-Protective Features Derived from a Farming Environment. PMID:33033123
High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis. PMID:33032522
Genomic analysis of Caldalkalibacillus thermarum TA2.A1 reveals aerobic alkaliphilic metabolism and evolutionary hallmarks linking alkaliphilic bacteria and plant life. PMID:33030592
Rhizobactin B is the preferred siderophore by a novel Pseudomonas isolate to obtain iron from dissolved organic matter in peatlands. PMID:33026607
Genomic and phenotypic analysis of siderophore-producing Rhodococcus qingshengii strain S10 isolated from an arid weathered serpentine rock environment. PMID:33025059
Taxono-genomics description of Olsenella lakotia SW165 T sp. nov., a new anaerobic bacterium isolated from cecum of feral chicken. PMID:33024551
Atribacteria Reproducing over Millions of Years in the Atlantic Abyssal Subseafloor. PMID:33024037
Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement. PMID:33023476
Genomic Virulence Features of Two Novel Species Nocardia barduliensis sp. nov. and Nocardia gipuzkoensis sp. nov., Isolated from Patients with Chronic Pulmonary Diseases. PMID:33019781
Phylogenetic Relationships and Potential Functional Attributes of the Genus Parapedobacter: A Member of Family Sphingobacteriaceae. PMID:33013721
Mixotrophic Iron-Oxidizing Thiomonas Isolates from an Acid Mine Drainage-Affected Creek. PMID:33008825
Ecophysiological Study of Paraburkholderia sp. Strain 1N under Soil Solution Conditions: Dynamic Substrate Preferences and Characterization of Carbon Use Efficiency. PMID:33008817
Complete Genome Sequences of Two Salmonella enterica Lytic Phages, NBSal006 and NBSal007. PMID:33004463
Genome Sequence of Campylobacter fetus subsp. venerealis NW_ED23, Isolated from Bovine Sheath Wash. PMID:33004452
Whole-Genome Sequencing of Multidrug-Resistant Campylobacter fetus subsp. fetus NWU_ED24, Isolated from a Bovine Sheath Wash Sample. PMID:33004450
Draft Genome Sequence of Shewanella sp. Strain T2.3D-1.1, Isolated from 121.8 Meters Deep in the Subsurface of the Iberian Pyrite Belt. PMID:33004443
Investigating host-microbiome interactions by droplet based microfluidics. PMID:33004077
Genomic analysis reveals high virulence and antibiotic resistance amongst phage susceptible Acinetobacter baumannii. PMID:32999368
Tailor-made exopolysaccharides-CRISPR-Cas9 mediated genome editing in Paenibacillus polymyxa. PMID:32995508
Genome sequence and annotation of Streptomyces tendae UTMC 3329, acid and alkaline tolerant actinobacterium. PMID:32994907
Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the Pseudomonas syringae species complex. PMID:32985740
A recently isolated human commensal Escherichia coli ST10 clone member mediates enhanced thermotolerance and tetrathionate respiration on a P1 phage-derived IncY plasmid. PMID:32985020
Genome-Wide Identification of Dickeya solani Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host Solanum tuberosum and a Weed-Host Solanum dulcamara. PMID:32983224
Biochemical and Taxonomic Characterization of Novel Haloarchaeal Strains and Purification of the Recombinant Halotolerant α-Amylase Discovered in the Isolate. PMID:32983058
Development and Application of a Prophage Integrase Typing Scheme for Group B Streptococcus. PMID:32983017
Plasmid mediated penicillin and tetracycline resistance among Neisseria gonorrhoeae isolates from Kenya. PMID:32977759
A Pan-Genome Guided Metabolic Network Reconstruction of Five Propionibacterium Species Reveals Extensive Metabolic Diversity. PMID:32977700
Genome-Based Insights into the Production of Carotenoids by Antarctic Bacteria, Planococcus sp. ANT_H30 and Rhodococcus sp. ANT_H53B. PMID:32977394
Application of whole genome sequencing to query a potential outbreak of Elizabethkingia anophelis in Ontario, Canada. PMID:32974512
Description of Chloramphenicol Resistant Kineococcus rubinsiae sp. nov. Isolated From a Spacecraft Assembly Facility. PMID:32973710
Is Long-Term Heavy Metal Exposure Driving Carriage of Antibiotic Resistance in Environmental Opportunistic Pathogens: A Comprehensive Phenomic and Genomic Assessment Using Serratia sp. SRS-8-S-2018. PMID:32973703
A Shallow Water Ferrous-Hulled Shipwreck Reveals a Distinct Microbial Community. PMID:32973699
Complete Genome Sequence of Enterococcus faecium FS86, Used for Propagation of Bacteriophages with Therapeutic Potential. PMID:32972936
Highly efficient gene transfer in the mouse gut microbiota is enabled by the Incl2 conjugative plasmid TP114. PMID:32963323
Updated Taxonomy of Pectobacterium Genus in the CIRM-CFBP Bacterial Collection: When Newly Described Species Reveal "Old" Endemic Population. PMID:32962307
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. PMID:32962098
Comprehensive genome analysis of a pangolin-associated Paraburkholderia fungorum provides new insights into its secretion systems and virulence. PMID:32953261
Genome-Centric Metagenomic Insights into the Impact of Alkaline/Acid and Thermal Sludge Pretreatment on the Microbiome in Digestion Sludge. PMID:32948522
Draft Genome Sequences of 13 Plant-Associated Actinobacteria of the Family Microbacteriaceae. PMID:32943566
Draft Genome Sequence of Pseudarthrobacter sp. Strain ATCC 49442 (Formerly Micrococcus luteus), a Pyridine-Degrading Bacterium. PMID:32943555
Paludisphaera soli sp. nov., a new member of the family Isosphaeraceae isolated from high altitude soil in the Western Himalaya. PMID:32936355
Defining Genomic and Predicted Metabolic Features of the Acetobacterium Genus. PMID:32934112
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. PMID:32929208
Genome-Assisted Characterization of Lactobacillus fermentum, Weissella cibaria, and Weissella confusa Strains Isolated from Sorghum as Starters for Sourdough Fermentation. PMID:32927810
Resistance to extended-spectrum cephalosporins in Escherichia coli and other Enterobacterales from Canadian turkeys. PMID:32925914
Genomic insights of Klebsiella pneumoniae isolated from a native Amazonian fish reveal wide resistome against heavy metals, disinfectants, and clinically relevant antibiotics. PMID:32916256
Growth rate alterations of human colorectal cancer cells by 157 gut bacteria. PMID:32915102
Draft Genome Sequence of Bacillus licheniformis Strain UASWS1606, a Plant Biostimulant for Agriculture. PMID:32912913
Draft Genome Sequence of Collimonas pratensis Strain PMB3(1), an Effective Mineral-Weathering and Chitin-Hydrolyzing Bacterial Strain. PMID:32912907
Draft Genome Sequence of Lactobacillus helveticus Lh 23, Isolated from Natural Whey Starter. PMID:32912904
Discovery and characterisation of circular bacteriocin plantacyclin B21AG from Lactiplantibacillus plantarum B21. PMID:32904251
Transcriptomic Analysis of Rhodococcus opacus R7 Grown on o-Xylene by RNA-Seq. PMID:32903390
Genome Analysis and Genomic Comparison of the Novel Species Arthrobacter ipsi Reveal Its Potential Protective Role in Its Bark Beetle Host. PMID:32901388
Genome Mining, Microbial Interactions, and Molecular Networking Reveals New Dibromoalterochromides from Strains of Pseudoalteromonas of Coiba National Park-Panama. PMID:32899199
Bacteria Belonging to Pseudomonas typographi sp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology. PMID:32899185
Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia. PMID:32895436
Complete Genome Sequences of Eight Phages Infecting Enterotoxigenic Escherichia coli in Swine. PMID:32883794
Draft Genome Sequence of Mycobacterium hippocampi DL, Isolated from European Sea Bass (Dicentrarchus labrax). PMID:32883791
Genome Sequences of Four Potentially Therapeutic Bacteriophages Infecting Shiga Toxin-Producing Escherichia coli. PMID:32883785
Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester. PMID:32883338
A 500-year tale of co-evolution, adaptation, and virulence: Helicobacter pylori in the Americas. PMID:32879462
First Report of Pathogenic Bacterium Kalamiella piersonii Isolated from Urine of a Kidney Stone Patient: Draft Genome and Evidence for Role in Struvite Crystallization. PMID:32872396
Bacteriophage-Induced Lipopolysaccharide Mutations in Escherichia coli Lead to Hypersensitivity to Food Grade Surfactant Sodium Dodecyl Sulfate. PMID:32872188
Characterization of the ϕCTX-like Pseudomonas aeruginosa phage Dobby isolated from the kidney stone microbiota. PMID:32864566
Characterization of methicillin-resistant Staphylococcus aureus through genomics approach. PMID:32864286
Endosymbionts of Metazoans Dwelling in the PACManus Hydrothermal Vent: Diversity and Potential Adaptive Features Revealed by Genome Analysis. PMID:32859597
Atypical Non-H2S-Producing Monophasic Salmonella Typhimurium ST3478 Strains from Chicken Meat at Processing Stage Are Adapted to Diverse Stresses. PMID:32859122
Production of Lipopeptide Biosurfactant by a Hydrocarbon-Degrading Antarctic Rhodococcus. PMID:32858859
Draft Genome Sequence of Vibrio ostreicida Strain PP-203, the Type Strain of a Pathogen That Infects Bivalve Larvae. PMID:32855258
The Impact of Mercury Selection and Conjugative Genetic Elements on Community Structure and Resistance Gene Transfer. PMID:32849443
Antimicrobial Resistance and Virulence-Associated Markers in Campylobacter Strains From Diarrheic and Non-diarrheic Humans in Poland. PMID:32849410
Exposure of the Opportunistic Marine Pathogen Photobacterium damselae subsp. damselae to Human Body Temperature Is a Stressful Condition That Shapes the Transcriptome, Viability, Cell Morphology, and Virulence. PMID:32849395
Genomic Surveillance of Ceftriaxone-Resistant Escherichia coli in Western New York Suggests the Extended-Spectrum β-Lactamase bla CTX-M-27 Is Emerging on Distinct Plasmids in ST38. PMID:32849376
Virulence genes and previously unexplored gene clusters in four commensal Neisseria spp. isolated from the human throat expand the neisserial gene repertoire. PMID:32845827
First Steps in the Analysis of Prokaryotic Pan-Genomes. PMID:32843837
First Genomic Characterization of blaVIM-1 and mcr-9-Coharbouring Enterobacter hormaechei Isolated from Food of Animal Origin. PMID:32842587
Novel IncFII plasmid harbouring blaNDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy. PMID:32835381
Emergence of Transferable mcr-9 Gene-Carrying Colistin-Resistant Salmonella enterica Dessau ST14 Isolated from Retail Chicken Meat in Korea. PMID:32830987
Living the Sweet Life: How Liquorilactobacillus hordei TMW 1.1822 Changes Its Behavior in the Presence of Sucrose in Comparison to Glucose. PMID:32825547
Characterization of vB_StuS_MMDA13, a Newly Discovered Bacteriophage Infecting the Agar-Degrading Species Sphingomonas turrisvirgatae. PMID:32824138
Streptomyces harenosi sp. nov., a home for a gifted strain isolated from Indonesian sand dune soil. PMID:32821037
Draft genome sequence of multi-resistant Salmonella enterica subsp. enterica serovar Rissen strain 19CS0416 isolated from Vietnam reveals mcr-1 plasmid mediated resistance to colistin already in 2013. PMID:32817764
Genome Sequences of Allochromatium palmeri and Allochromatium humboldtianum Expand the Allochromatium Family Tree of Purple Sulfur Photosynthetic Bacteria within the Gammaproteobacteria and Further Refine the Genus. PMID:32817156
Draft Genome Sequences of Pseudomonas koreensis Strain UASWS1668, Bacillus megaterium Strain UASWS1667, and Paenibacillus sp. Strain UASWS1643, Considered Potential Plant Growth-Promoting Rhizobacteria. PMID:32817155
Draft Genome Sequence of Aeromonas sobria Strain CHT-30, Isolated from a Diseased Rainbow Trout (Oncorhynchus mykiss) in Peru. PMID:32817145
Phenotypic Parallelism during Experimental Adaptation of a Free-Living Bacterium to the Zebrafish Gut. PMID:32817106
Draft Genome Sequence of Ligilactobacillus salivarius FFIG58, Isolated from the Intestinal Tract of Wakame-Fed Pig. PMID:32816987
Comparative genomic analysis of a Shiga toxin-producing Escherichia coli (STEC) O145:H25 associated with a severe pediatric case of hemolytic uremic syndrome in Davidson County, Tennessee, US. PMID:32807093
Chronological set of E. coli O157:H7 bovine strains establishes a role for repeat sequences and mobile genetic elements in genome diversification. PMID:32807088
Insights into Mobile Genetic Elements of the Biocide-Degrading Bacterium Pseudomonas nitroreducens HBP-1. PMID:32806781
In silico analyses of the genomes of three new bacteriocin-producing bacteria isolated from animal's faeces. PMID:32803347
Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides. PMID:32802923
Complete Genomic Analysis of Enterococcus faecium Heat-Resistant Strain Developed by Two-Step Adaptation Laboratory Evolution Method. PMID:32793575
Utilization of Clustered Regularly Interspaced Short Palindromic Repeats to Genotype Escherichia coli Serogroup O80. PMID:32793166
Isolation and Characterization of Novel Lytic Bacteriophages Infecting Epidemic Carbapenem-Resistant Klebsiella pneumoniae Strains. PMID:32793133
Gut microbiome of endangered Tor putitora (Ham.) as a reservoir of antibiotic resistance genes and pathogens associated with fish health. PMID:32787773
Cloning and functional expression of a food-grade circular bacteriocin, plantacyclin B21AG, in probiotic Lactobacillus plantarum WCFS1. PMID:32785265
Genomic Analysis of Three Cheese-Borne Pseudomonas lactis with Biofilm and Spoilage-Associated Behavior. PMID:32784363
A new plasmid carrying mphA causes prevalence of azithromycin resistance in enterotoxigenic Escherichia coli serogroup O6. PMID:32782021
Real-Time PCR Assays for the Specific Identification of Probiotic Strains Lactobacillus gasseri BNR17 and Lactobacillus reuteri LRC (NCIMB 30242). PMID:32780278
Genome reconstruction of white spot syndrome virus (WSSV) from archival Davidson's-fixed paraffin embedded shrimp (Penaeus vannamei) tissue. PMID:32778727
Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon. PMID:32776937
Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient. PMID:32775579
DRAM for distilling microbial metabolism to automate the curation of microbiome function. PMID:32766782
Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish (Ictalurus punctatus). PMID:32766165
Impact of spatial proximity on territoriality among human skin bacteria. PMID:32764612
Draft Genome Sequence of Ligilactobacillus salivarius TUCO-L2, Isolated from Lama glama Milk. PMID:32763947
Complete Genome Sequence of Cellulase-Producing Microbulbifer sp. Strain GL-2, Isolated from Marine Fish Intestine. PMID:32763942
Draft Genome Sequence of Stenotrophomonas maltophilia MDMC339, Isolated from Soil of Merzouga Desert in Morocco. PMID:32763932
Comparative Genome Analysis of Bacillus sporothermodurans with Its Closest Phylogenetic Neighbor, Bacillus oleronius, and Bacillus cereus and Bacillus subtilis Groups. PMID:32759699
Antimicrobial Resistance in Wildlife in Guadeloupe (French West Indies): Distribution of a Single bla CTX-M-1/IncI1/ST3 Plasmid Among Humans and Wild Animals. PMID:32754130
Mechanisms of Linezolid Resistance Among Enterococci of Clinical Origin in Spain-Detection of optrA- and cfr(D)-Carrying E. faecalis. PMID:32751552
Phylogenomic Classification and Biosynthetic Potential of the Fossil Fuel-Biodesulfurizing Rhodococcus Strain IGTS8. PMID:32733398
High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. PMID:32732238
Candidatus Anthektikosiphon siderophilum OHK22, a New Member of the Chloroflexi Family Herpetosiphonaceae from Oku-okuhachikurou Onsen. PMID:32727976
The Challenges of Using Oropharyngeal Samples To Measure Pneumococcal Carriage in Adults. PMID:32727860
An Enteric Pathogen Subverts Colonization Resistance by Evading Competition for Amino Acids in the Gut. PMID:32726577
Genome Analysis of Two Novel Synechococcus Phages That Lack Common Auxiliary Metabolic Genes: Possible Reasons and Ecological Insights by Comparative Analysis of Cyanomyoviruses. PMID:32722486
New Plant Growth-Promoting, Chromium-Detoxifying Microbacterium Species Isolated From a Tannery Wastewater: Performance and Genomic Insights. PMID:32719777
Characterization of pTS14, an IncF2:A1:B1 Plasmid Carrying tet(M) in a Salmonella enterica Isolate. PMID:32719670
Potential evolutionary impact of integrative and conjugative elements (ICEs) and genomic islands in the Ralstonia solanacearum species complex. PMID:32719415
Selection of Exopolysaccharide-Producing Lactobacillus Plantarum (Lactiplantibacillus Plantarum) Isolated from Algerian Fermented Foods for the Manufacture of Skim-Milk Fermented Products. PMID:32717902
Lysin LysMK34 of Acinetobacter baumannii Bacteriophage PMK34 Has a Turgor Pressure-Dependent Intrinsic Antibacterial Activity and Reverts Colistin Resistance. PMID:32709718
New Insight into Antimicrobial Compounds from Food and Marine-Sourced Carnobacterium Species through Phenotype and Genome Analyses. PMID:32708353
Complete Genome Sequence of Broad-Host-Range Staphylococcus aureus Myophage ESa1. PMID:32703841
Complete genome sequence and comparative analysis of two potential probiotics Bacillus subtilis isolated from honey and honeybee microbiomes. PMID:32700263
Antibiotic Resistance-Susceptibility Profiles of Enterococcus faecalis and Streptococcus spp. From the Human Vagina, and Genome Analysis of the Genetic Basis of Intrinsic and Acquired Resistances. PMID:32695087
Identification of the Pseudomonas aeruginosa O17 and O15 O-Specific Antigen Biosynthesis Loci Reveals an ABC Transporter-Dependent Synthesis Pathway and Mechanisms of Genetic Diversity. PMID:32690555
Conserved Pigment Profiles in Phylogenetically Diverse Symbiotic Bacteria Associated with the Corals Montastraea cavernosa and Mussismilia braziliensis. PMID:32681284
Characterization of the genes responsible for rubber degradation in Actinoplanes sp. strain OR16. PMID:32681242
Two novel bacteriophage genera from a groundwater reservoir highlight subsurface environments as underexplored biotopes in bacteriophage ecology. PMID:32681144
Complete Genome Sequences of 10 Phages Lytic against Multidrug-Resistant Pseudomonas aeruginosa. PMID:32675185
Multiple Plasmid Vectors Mediate the Spread of fosA3 in Extended-Spectrum-β-Lactamase-Producing Enterobacterales Isolates from Retail Vegetables in China. PMID:32669475
Impact of Facultative Bacteria on the Metabolic Function of an Obligate Insect-Bacterial Symbiosis. PMID:32665268
Identification of 5-Fluoro-5-Deoxy-Ribulose as a Shunt Fluorometabolite in Streptomyces sp. MA37. PMID:32664266
Novel xylanase producing Bacillus strain X2: molecular phylogenetic analysis and its application for production of xylooligosaccharides. PMID:32656061
Molecular and Genomic Characterization of PFAB2: A Non-virulent Bacillus anthracis Strain Isolated from an Indian Hot Spring. PMID:32655288
Porin from Marine Bacterium Marinomonas primoryensis KMM 3633T: Isolation, Physico-Chemical Properties, and Functional Activity. PMID:32650591
Isolation and Characterization of Bacteriophages That Infect Citrobacter rodentium, a Model Pathogen for Intestinal Diseases. PMID:32650458
Draft Genome Sequence of Stenotrophomonas pavanii Strain MHSD12, a Bacterial Endophyte Associated with Dicoma anomala. PMID:32646904
Impact of insertion sequences on convergent evolution of Shigella species. PMID:32644999
The genome insights of Streptomyces lannensis T1317-0309 reveals actinomycin D production. PMID:32641781
Draft genome sequence data of two Salmonella bacteria from serogroup C type. PMID:32637513
Draft-genome sequence data and phylogenomic comparison of two marine-sourced bacterial strains Pseudoalteromonas sp. MIP2626 and Psychrobacter sp. BI730. PMID:32637502
Abundant and Diverse RNA Viruses in Insects Revealed by RNA-Seq Analysis: Ecological and Evolutionary Implications. PMID:32636338
A Genome-Scale Metabolic Model of 2,3-Butanediol Production by Thermophilic Bacteria Geobacillus icigianus. PMID:32635563
Impact of Different Trace Elements on the Growth and Proteome of Two Strains of Granulicella, Class "Acidobacteriia". PMID:32625179
Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways. PMID:32620774
Draft Genome Sequence of Bacillus cereus TN10, a Chromium-Resistant and -Reducing Strain Isolated from Tannery Effluent. PMID:32616645
Rapid spread of OXA-244-producing Escherichia coli ST38 in Germany: insights from an integrated molecular surveillance approach; 2017 to January 2020. PMID:32613940
Borderline resistance to oxacillin in Staphylococcus aureus after treatment with sub-lethal sodium hypochlorite concentrations. PMID:32613099
Hawaiian Bobtail Squid Symbionts Inhibit Marine Bacteria via Production of Specialized Metabolites, Including New Bromoalterochromides BAC-D/D'. PMID:32611694
Is Lactobacillus Gram-Positive? A Case Study of Lactobacillus iners. PMID:32610432
Structural Genomics of repA, repB 1-Carrying IncFIB Family pA1705-qnrS, P911021-tetA, and P1642-tetA, Multidrug-Resistant Plasmids from Klebsiella pneumoniae. PMID:32606838
Pseudoscorpion Wolbachia symbionts: diversity and evidence for a new supergroup S. PMID:32605600
Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel. PMID:32601485
Comparative genomics of the genus Roseburia reveals divergent biosynthetic pathways that may influence colonic competition among species. PMID:32589566
Draft Genome Sequence of Bifidobacterium pseudocatenulatum Bif4, Isolated from Healthy Infant Feces. PMID:32586871
First report of plasmid-mediated colistin resistance mcr-8.1 gene from a clinical Klebsiella pneumoniae isolate from Lebanon. PMID:32586402
Characterization of the Phenanthrene-Degrading Sphingobium yanoikuyae SJTF8 in Heavy Metal Co-Existing Liquid Medium and Analysis of Its Metabolic Pathway. PMID:32586023
Dissemination of Linezolid Resistance Through Sex Pheromone Plasmid Transfer in Enterococcus faecalis. PMID:32582110
Bioprospecting Microbial Diversity for Lignin Valorization: Dry and Wet Screening Methods. PMID:32582068
Comparative Genomics and Antimicrobial Resistance Profiling of Elizabethkingia Isolates Reveal Nosocomial Transmission and In Vitro Susceptibility to Fluoroquinolones, Tetracyclines, and Trimethoprim-Sulfamethoxazole. PMID:32580952
Genome Analysis of Endobacterium cerealis, a Novel Genus and Species Isolated from Zea mays Roots in North Spain. PMID:32580505
An amphipathic peptide with antibiotic activity against multidrug-resistant Gram-negative bacteria. PMID:32576824
A Unique Isolation of a Lytic Bacteriophage Infected Bacillus anthracis Isolate from Pafuri, South Africa. PMID:32575780
The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa. PMID:32570896
Streptomyces Endophytes Promote Host Health and Enhance Growth across Plant Species. PMID:32561579
A chromosome-level assembly of the cat flea genome uncovers rampant gene duplication and genome size plasticity. PMID:32560686
Vibrios from the Norwegian marine environment: Characterization of associated antibiotic resistance and virulence genes. PMID:32558371
Genomic sequence analysis of Dissulfurirhabdus thermomarina SH388 and proposed reassignment to Dissulfurirhabdaceae fam. nov. PMID:32553052
Strain-Level Diversity Impacts Cheese Rind Microbiome Assembly and Function. PMID:32546667
Genome re-sequencing and reannotation of the Escherichia coli ER2566 strain and transcriptome sequencing under overexpression conditions. PMID:32546194
A Vibrio cholerae Core Genome Multilocus Sequence Typing Scheme To Facilitate the Epidemiological Study of Cholera. PMID:32540931
Campylobacter bacteriophage DA10: an excised temperate bacteriophage targeted by CRISPR-cas. PMID:32532247
Characterization of the IncHI2 plasmid pTW4 harboring tet(M) from an isolate of Escherichia coli ST162. PMID:32528162
Bacterial symbionts support larval sap feeding and adult folivory in (semi-)aquatic reed beetles. PMID:32528063
Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract. PMID:32525961
YerA41, a Yersinia ruckeri Bacteriophage: Determination of a Non-Sequencable DNA Bacteriophage Genome via RNA-Sequencing. PMID:32517038
Modulation of bacterial multicellularity via spatio-specific polysaccharide secretion. PMID:32516311
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment. PMID:32514171
Bifidobacterium β-Glucosidase Activity and Fermentation of Dietary Plant Glucosides Is Species and Strain Specific. PMID:32503148
Parapseudoflavitalea muciniphila gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a human peritoneal tumour and reclassification of Pseudobacter ginsenosidimutans as Pseudoflavitalea ginsenosidimutans comb. nov. PMID:32501783
The Role of the Salmonella spvB IncF Plasmid and Its Resident Entry Exclusion Gene traS on Plasmid Exclusion. PMID:32499773
Draft Genome Sequence of an Escherichia coli Sequence Type 420 Isolate from a Patient with Urinary Tract Infection in Northern California. PMID:32499367
Genome Sequences of Five Streptomyces Strains Isolated at Microscale. PMID:32499350
Characterization of Endolysin LyJH307 with Antimicrobial Activity Against Streptococcus Bovis. PMID:32492966
Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity. PMID:32492369
Chlorpromazine and Amitriptyline Are Substrates and Inhibitors of the AcrB Multidrug Efflux Pump. PMID:32487753
Identification and Functional Analysis of Temperate Siphoviridae Bacteriophages of Acinetobacter baumannii. PMID:32486497
Novel insights into the Thaumarchaeota in the deepest oceans: their metabolism and potential adaptation mechanisms. PMID:32482169
The Genome Structure of Ciprofloxacin-Resistant Mycoplasma Hominis Clinical Isolates. PMID:32477599
Mobile Genetic Elements Harboring Antibiotic Resistance Determinants in Acinetobacter baumannii Isolates From Bolivia. PMID:32477313
Emerging Threat of Antimicrobial Resistance in β-Hemolytic Streptococci. PMID:32477287
Impact of Electron Acceptor Availability on Methane-Influenced Microorganisms in an Enrichment Culture Obtained From a Stratified Lake. PMID:32477281
Effect of oxygen limitation on the enrichment of bacteria degrading either benzene or toluene and the identification of Malikia spinosa (Comamonadaceae) as prominent aerobic benzene-, toluene-, and ethylbenzene-degrading bacterium: enrichment, isolation and whole-genome analysis. PMID:32474783
Complete Genome Sequence of Acinetobacter baumannii Phage BS46. PMID:32467276
Complete and Draft Genome Sequences of 12 Plant-Associated Rathayibacter Strains of Known and Putative New Species. PMID:32467269
Complete Genome Sequences of Five Salmonella enterica Phages, NBSal001, NBSal002, NBSal003, NBSal004, and NBSal005. PMID:32467267
Characterization of a potential probiotic bacterium Lactococcus raffinolactis WiKim0068 isolated from fermented vegetable using genomic and in vitro analyses. PMID:32460704
A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria. PMID:32457360
Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants. PMID:32457320
Complete genome sequence of a methicillin-resistant Staphylococcus lugdunensis strain and characteristics of its staphylococcal cassette chromosome mec. PMID:32457307
Isolation, nucleotide sequencing and genomic comparison of a Novel SXT/R391 ICE mobile genetic element isolated from a municipal wastewater environment. PMID:32457296
Simultaneous Nasal Carriage by Methicillin-Resistant and Methicillin Susceptible Staphylococcus aureus of Lineage ST398 in a Live Pig Transporter. PMID:32455801
No evidence for Wolbachia as a nutritional co-obligate endosymbiont in the aphid Pentalonia nigronervosa. PMID:32443976
In Vitro Activity of a Novel Siderophore-Cephalosporin, GT-1 and Serine-Type β-Lactamase Inhibitor, GT-055, against Escherichia coli, Klebsiella pneumoniae and Acinetobacter spp. Panel Strains. PMID:32443875
Emergence of New Non-Clonal Group 258 High-Risk Clones among Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae Isolates, France. PMID:32441629
Comparative genomics of Streptococcus parauberis: new target for molecular identification of serotype III. PMID:32440705
Draft Genome Sequences of Three Pseudomonas fluorescens Strains Isolated from Marine Sponges Harvested off the West Coast of Ireland. PMID:32439679
Draft Genome Sequence of a Novel Species of Halococcus (Strain IIIV-5B), an Endophytic Archaeon Isolated from the Leaf Tissue of Avicennia germinans. PMID:32439678
Reduced Genome of the Gut Symbiotic Bacterium "Candidatus Benitsuchiphilus tojoi" Provides Insight Into Its Possible Roles in Ecology and Adaptation of the Host Insect. PMID:32435239
UvrY is required for the full virulence of Aeromonas dhakensis. PMID:32434424
Emergence of Enteroaggregative Escherichia coli within the ST131 Lineage as a Cause of Extraintestinal Infections. PMID:32430467
The functional capacity of plantaricin-producing Lactobacillus plantarum SF9C and S-layer-carrying Lactobacillus brevis SF9B to withstand gastrointestinal transit. PMID:32430020
Genome Comparison Identifies Different Bacillus Species in a Bast Fibre-Retting Bacterial Consortium and Provides Insights into Pectin Degrading Genes. PMID:32424209
Sorghum Growth Promotion by Paraburkholderia tropica and Herbaspirillum frisingense: Putative Mechanisms Revealed by Genomics and Metagenomics. PMID:32414048
Biochemical and Genomic Characterization of the Cypermethrin-Degrading and Biosurfactant-Producing Bacterial Strains Isolated from Marine Sediments of the Chilean Northern Patagonia. PMID:32414006
Whole Genome Sequencing and Comparative Genomic Analyses of Lysinibacillus pakistanensis LZH-9, a Halotolerant Strain with Excellent COD Removal Capability. PMID:32408484
Whole genome sequence analysis of Cupriavidus campinensis S14E4C, a heavy metal resistant bacterium. PMID:32406019
The complete genome sequence of Bacillus velezensis LPL061, an exopolysaccharide-producing bacterium. PMID:32405447
Newly sequenced genomes of four Bacillus Calmette Guerin vaccines. PMID:32401897
The draft genome of Staphylococcus warneri TRPF4, a bacteriocin producer with potent activity against the causative agent of Legionnaires' Disease. PMID:32399382
Isolation and characterization of a novel Escherichia coli O157:H7-specific phage as a biocontrol agent. PMID:32399231
High Synteny and Sequence Identity between Genomes of Nitrosococcus oceani Strains Isolated from Different Oceanic Gyres Reveals Genome Economization and Autochthonous Clonal Evolution. PMID:32397339
An Intranuclear Sodalis-Like Symbiont and Spiroplasma Coinfect the Carrot Psyllid, Bactericera trigonica (Hemiptera, Psylloidea). PMID:32397333
Benzylsuccinate Synthase is Post-Transcriptionally Regulated in the Toluene-Degrading Denitrifier Magnetospirillum sp. Strain 15-1. PMID:32392861
Telomeric and sub-telomeric regions undergo rapid turnover within a Streptomyces population. PMID:32382084
Draft Genome Sequence of an Isolate of Nontypeable Haemophilus influenzae from an Acute Exacerbation of Chronic Obstructive Pulmonary Disease in Tasmania. PMID:32381620
Comparative genomics of whole-cell pertussis vaccine strains from India. PMID:32381023
Pseudoalteromonas rhizosphaerae sp. nov., a novel plant growth-promoting bacterium with potential use in phytoremediation. PMID:32375987
Characterization of Clostridium novyi isolated from a sow in a sudden death case in Korea. PMID:32375805
Microbiome and Functional Analysis of a Traditional Food Process: Isolation of a Novel Species (Vibrio hibernica) With Industrial Potential. PMID:32373093
Metagenomic- and Cultivation-Based Exploration of Anaerobic Chloroform Biotransformation in Hypersaline Sediments as Natural Source of Chloromethanes. PMID:32370295
Complete genome sequence of a boxwood endophyte Burkholderia sp. SSG with broad biotechnological application potential. PMID:32368513
An NDM-1-Producing Acinetobacter towneri Isolate from Hospital Sewage in China. PMID:32368101
Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni. PMID:32366649
Bridging genomics and field research: draft genome sequence of Bacillus thuringiensis CR71, an endophytic bacterium that promotes plant growth and fruit yield in Cucumis sativus L. PMID:32355594
Whole-Genome Sequence of a Plant Growth-Promoting Strain, Serratia marcescens BTL07, Isolated from the Rhizoplane of Capsicum annuum L. PMID:32354984
Genome Sequence of the Alphaproteobacterium Blastochloris sulfoviridis DSM 729, Which Requires Reduced Sulfur as a Growth Supplement and Contains Bacteriochlorophyll b. PMID:32354981
Genome Sequence of Resistant Serratia sp. Strain HRI, Isolated from a Bottle of Didecyldimethylammonium Chloride-Based Disinfectant. PMID:32354966
Whole-Genome Sequencing of Mexican Strains of Anaplasma marginale: An Approach to the Causal Agent of Bovine Anaplasmosis. PMID:32351981
Proposal for Unification of the Genus Metakosakonia and the Genus Phytobacter to a Single Genus Phytobacter and Reclassification of Metakosakonia massiliensis as Phytobacter massiliensis comb. nov. PMID:32350604
Genomic characterization of Lactobacillus fermentum DSM 20052. PMID:32349666
Description of Three Novel Members in the Family Geobacteraceae, Oryzomonas japonicum gen. nov., sp. nov., Oryzomonas sagensis sp. nov., and Oryzomonas ruber sp. nov. PMID:32349406
Siccibacter turicensis from Kangaroo Scats: Possible Implication in Cellulose Digestion. PMID:32349400
Genomic and Metabolomic Analysis of Antarctic Bacteria Revealed Culture and Elicitation Conditions for the Production of Antimicrobial Compounds. PMID:32349314
Dataset on phenotypic characterization, on protein and genome analysis of three fluorescent Pseudomonas strains from mid-mountain water. PMID:32322618
Effects of Halophyte Root Exudates and Their Components on Chemotaxis, Biofilm Formation and Colonization of the Halophilic Bacterium Halomonas Anticariensis FP35T. PMID:32316222
Complete Genome Sequence of Chlamydia avium PV 4360/2, Isolated from a Feral Pigeon in Italy. PMID:32299890
Complete Genome Sequence of Athalassotoga saccharophila Strain NAS-01, a Deep-Branching Thermophilic Lineage in the Phylum Thermotogae. PMID:32299888
High-Quality Draft Genome Sequences of Two Deltaproteobacterial Endosymbionts, Delta1a and Delta1b, from the Uncultured Sva0081 Clade, Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. PMID:32299882
Draft Genome Sequences of Three Amino Acid-Secreting Lactococcus lactis Strains. PMID:32299876
Complete Genome Sequence of Staphylococcus aureus Phage SA75, Isolated from Goat Feces. PMID:32299871
Comparative Genomics and Transcriptomics Analyses Reveal a Unique Environmental Adaptability of Vibrio fujianensis. PMID:32294952
Toward Biorecycling: Isolation of a Soil Bacterium That Grows on a Polyurethane Oligomer and Monomer. PMID:32292389
Draft Genome Sequence of Pseudarthrobacter phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated From the Medicinal Plant Pellaea calomelanos. PMID:32284671
Aerococcus urinae Isolated from Women with Lower Urinary Tract Symptoms: In Vitro Aggregation and Genome Analysis. PMID:32284319
Genome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1. PMID:32273358
Draft Genome Sequence of Mercury-Resistant Serratia sp. Strain SRS-8-S-2018. PMID:32273355
RhlR-Regulated Acyl-Homoserine Lactone Quorum Sensing in a Cystic Fibrosis Isolate of Pseudomonas aeruginosa. PMID:32265330
Draft Genome Sequence of the Urinary Catheter Isolate Enterobacter ludwigii CEB04 with High Biofilm Forming Capacity. PMID:32260576
Whole-genome analysis of bacillus velezensis ZF2, a biocontrol agent that protects cucumis sativus against corynespora leaf spot diseases. PMID:32257742
Plant Growth-Promoting Methylobacteria Selectively Increase the Biomass of Biotechnologically Relevant Microalgae. PMID:32256478
Crucial Role of the Accessory Genome in the Evolutionary Trajectory of Acinetobacter baumannii Global Clone 1. PMID:32256462
Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination. PMID:32252626
SspABCD-SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities. PMID:32251370
Taxogenomic assessment and genomic characterisation of Weissella cibaria strain 92 able to metabolise oligosaccharides derived from dietary fibres. PMID:32246087
Whole-Genome Comparisons of Staphylococcus agnetis Isolates from Cattle and Chickens. PMID:32245765
Draft Genome Sequence of Desulfobacter hydrogenophilus DSM 3380, a Psychrotolerant Sulfate-Reducing Bacterium. PMID:32241859
Draft Genome Sequences of Thiorhodococcus mannitoliphagus and Thiorhodococcus minor, Purple Sulfur Photosynthetic Bacteria in the Gammaproteobacterial Family Chromatiaceae. PMID:32241858
Genetic and molecular characterization of multicomponent resistance of Pseudomonas against allicin. PMID:32234751
Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese tertiary-care hospital. PMID:32234124
Lysinibacillus cavernae sp. nov., isolated from cave soil. PMID:32232517
Analysis of the Extracellular Proteome of Colistin-Resistant Korean Acinetobacter baumannii Strains. PMID:32226849
Draft genome sequence of Kocuria indica DP-K7, a methyl red degrading actinobacterium. PMID:32226704
Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment. PMID:32221328
Milk microbial composition of Brazilian dairy cows entering the dry period and genomic comparison between Staphylococcus aureus strains susceptible to the bacteriophage vB_SauM-UFV_DC4. PMID:32218514
Fodinicola acaciae sp. nov., an Endophytic Actinomycete Isolated from the Roots of Acacia mangium Willd. and Its Genome Analysis. PMID:32218319
Characterization of the Enterobacter Phage vB_EclM_CIP9. PMID:32217684
Draft Genome Sequence of Desulfovibrio sulfodismutans ThAc01, a Heterotrophic Sulfur-Disproportionating Member of the Desulfobacterota. PMID:32217682
Complete Genome Sequences of Clinical Pandoraea fibrosis Isolates. PMID:32217674
Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes. PMID:32213257
Rhizosphere assisted biodegradation of benzo(a)pyrene by cadmium resistant plant-probiotic Serratia marcescens S2I7, and its genomic traits. PMID:32210346
Genome-based species-specific primers for rapid identification of six species of Lactobacillus acidophilus group using multiplex PCR. PMID:32196527
Reconstruction and Validation of a Genome-Scale Metabolic Model of Streptococcus oralis (iCJ415), a Human Commensal and Opportunistic Pathogen. PMID:32194617
Haloterrigena sp. Strain SGH1, a Bacterioruberin-Rich, Perchlorate-Tolerant Halophilic Archaeon Isolated From Halite Microbial Communities, Atacama Desert, Chile. PMID:32194531
Comparative Genome Analysis of the Lignocellulose Degrading Bacteria Citrobacter freundii so4 and Sphingobacterium multivorum w15. PMID:32194522
Draft Genome Sequence of Vibrio sp. Strain OCN044, Isolated from Palmyra Atoll, Northern Line Islands. PMID:32193232
Genomic Analysis of Bacillus megaterium NCT-2 Reveals Its Genetic Basis for the Bioremediation of Secondary Salinization Soil. PMID:32190639
Draft Genome Analysis of Christensenella minuta DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function. PMID:32190126
New molecular target for the phylogenetic identification of Leptospira species directly from clinical samples: an alternative gene to 16S rRNA. PMID:32187337
Genomic and Transcriptomic Evidence Supports Methane Metabolism in Archaeoglobi. PMID:32184369
Horizontal Plasmid Transfer Promotes the Dissemination of Asian Acute Hepatopancreatic Necrosis Disease and Provides a Novel Mechanism for Genetic Exchange and Environmental Adaptation. PMID:32184363
Complete Genome Sequence of Pseudomonas psychrotolerans CS51, a Plant Growth-Promoting Bacterium, Under Heavy Metal Stress Conditions. PMID:32182882
Complete Genome Sequence of Kosakonia radicincitans GXGL-4A, a Nitrogen-Fixing Bacterium with Capability to Degrade TEX. PMID:32170407
Draft genome sequence of Bacillus sp. EE-W1 isolated from a biogas reactor. PMID:32169122
The whole-genome sequence analysis of Enterobacter cloacae strain Ghats1: insights into endophytic lifestyle-associated genomic adaptations. PMID:32166358
A novel Asfarvirus-like virus identified as a potential cause of mass mortality of abalone. PMID:32165658
Complete Genome Sequences of Two Strains of Streptococcus pyogenes Belonging to an Emergent Clade of the Genotype emm89 in Brittany, France. PMID:32165385
Virome diversity analysis reveals novel enteroviruses and a human picobirnavirus in stool samples from African green monkeys with diarrhea. PMID:32165243
Comparative Genomic Analysis Confirms Five Genetic Populations of the Select Agent, Rathayibacter toxicus. PMID:32150860
Streptococcus halichoeri: Comparative Genomics of an Emerging Pathogen. PMID:32149071
Complete Genome Sequences for Two Myoviridae Strains Infecting Cyanobacteria in a Subarctic Lake. PMID:32139574
WhatsGNU: a tool for identifying proteomic novelty. PMID:32138767
Lactococcus Ceduovirus Phages Isolated from Industrial Dairy Plants-from Physiological to Genomic Analyses. PMID:32138347
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. PMID:32134915
Methylobacterium sp. 2A Is a Plant Growth-Promoting Rhizobacteria That Has the Potential to Improve Potato Crop Yield Under Adverse Conditions. PMID:32127795
Isoprene Oxidation by the Gram-Negative Model bacterium Variovorax sp. WS11. PMID:32121431
Specific Integration of Temperate Phage Decreases the Pathogenicity of Host Bacteria. PMID:32117795
Coexistence of Two bla NDM- 5 Genes Carried on IncX3 and IncFII Plasmids in an Escherichia coli Isolate Revealed by Illumina and Nanopore Sequencing. PMID:32117184
Genomic Stability of Composite SCCmec ACME and COMER-Like Genetic Elements in Staphylococcus epidermidis Correlates With Rate of Excision. PMID:32117176
Isolation, Characterization, and Complete Genome Sequence of a Bradyrhizobium Strain Lb8 From Nodules of Peanut Utilizing Crack Entry Infection. PMID:32117123
Comparative Insights Into the Complete Genome Sequence of Highly Metal Resistant Cupriavidus metallidurans Strain BS1 Isolated From a Gold-Copper Mine. PMID:32117100
A Glacier Bacterium Produces High Yield of Cryoprotective Exopolysaccharide. PMID:32117080
Whole-chromosome hitchhiking driven by a male-killing endosymbiont. PMID:32108180
Genomic insight into the origins and evolution of symbiosis genes in Phaseolus vulgaris microsymbionts. PMID:32106817
Genomic and Metabolomic Analyses of Natural Products in Nodularia spumigena Isolated from a Shrimp Culture Pond. PMID:32106513
Two New Alginate Lyases of PL7 and PL6 Families from Polysaccharide-Degrading Bacterium Formosa algae KMM 3553T: Structure, Properties, and Products Analysis. PMID:32102373
Sequencing and Analysis of the Genome of Propionibacterium Freudenreichii T82 Strain: Importance for Industry. PMID:32102319
Genomic characterization of the non-O1/non-O139 Vibrio cholerae strain that caused a gastroenteritis outbreak in Santiago, Chile, 2018. PMID:32100707
Draft genome sequence of Actinocorallia populi A251T, an actinomycetes producing polyketides and nonribosomal polypeptides. PMID:32099730
Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads. PMID:32093762
Bacterial Populations in Subgingival Plaque Under Healthy and Diseased Conditions: Genomic Insights into Oral Adaptation Strategies by Lactobacillus sp. Strain DISK7. PMID:32089577
Comparative Genomic Analysis of a Novel Strain of Taiwan Hot-Spring Cyanobacterium Thermosynechococcus sp. CL-1. PMID:32082292
Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic Acetobacterium wieringae Strain JM. PMID:32082285
Whole-Genome Sequence of Lachnospiraceae Bacterium NBRC 112778, Isolated from a Mesophilic Methanogenic Bioreactor. PMID:32079631
Abundance of mobile genetic elements in an Acinetobacter lwoffii strain isolated from Transylvanian honey sample. PMID:32076091
Genomic and Metabolic Insights into Denitrification, Sulfur Oxidation, and Multidrug Efflux Pump Mechanisms in the Bacterium Rhodoferax sediminis sp. nov. PMID:32075304
Comparative Analysis of Structural Variations Due to Genome Shuffling of Bacillus Subtilis VS15 for Improved Cellulase Production. PMID:32075107
Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. PMID:32071394
Draft whole-genome sequence of Brevibacterium casei strain isolated from a bloodstream infection. PMID:32067212
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii. PMID:32066773
Isolation and genomic analysis of 11-aminoundecanoic acid-degrading bacterium Pseudomonas sp. JG-B from nylon 11 enrichment culture. PMID:32064005
Identification of Genes Required for Glucan Exopolysaccharide Production in Lactobacillus johnsonii Suggests a Novel Biosynthesis Mechanism. PMID:32060027
"Candidatus Desulfobulbus rimicarensis," an Uncultivated Deltaproteobacterial Epibiont from the Deep-Sea Hydrothermal Vent Shrimp Rimicaris exoculata. PMID:32060020
Responses of Acidobacteria Granulicella sp. WH15 to High Carbon Revealed by Integrated Omics Analyses. PMID:32059463
Comparative genomics: Dominant coral-bacterium Endozoicomonas acroporae metabolizes dimethylsulfoniopropionate (DMSP). PMID:32055028
GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms. PMID:32052832
Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection. PMID:32038580
Genome analysis of a wild rumen bacterium Enterobacter aerogenes LU2 - a novel bio-based succinic acid producer. PMID:32029880
Genome Sequence of the Acidophilic Nonsulfur Purple Photosynthetic Alphaproteobacterium Rhodovastum atsumiense, a Divergent Member of the Acetobacteraceae Family. PMID:32029562
Draft Genome Sequence of a New Staphylococcal Species Isolated from Human Skin. PMID:32029556
Pathogenomic Analysis of a Novel Extensively Drug-Resistant Citrobacter freundii Isolate Carrying a blaNDM-1 Carbapenemase in South Africa. PMID:32024012
Characterization of blaNDM-1- and blaSHV-12-Positive IncX3 Plasmid in an Enterobacter Hormaechei New Sequence Type 1000 from China. PMID:32021329
Wound infection with Vibrio harveyi following a traumatic leg amputation after a motorboat propeller injury in Mallorca, Spain: a case report and review of literature. PMID:32019500
Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing. PMID:32016399
Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium. PMID:32013859
Genomic Characterization of a Mercury Resistant Arthrobacter sp. H-02-3 Reveals the Presence of Heavy Metal and Antibiotic Resistance Determinants. PMID:32010097
Community-intrinsic properties enhance keratin degradation from bacterial consortia. PMID:32004342
Dysregulated FXR-FGF19 signaling and choline metabolism are associated with gut dysbiosis and hyperplasia in a novel pig model of pediatric NASH. PMID:32003601
Complete Genome Sequence of Lignin-Degrading Streptomyces sp. Strain S6, Isolated from an Oil Palm Plantation in Malaysia. PMID:32001560
Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253. PMID:31992772
Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes. PMID:31980727
Signalling and Bioactive Metabolites from Streptomyces sp. RK44. PMID:31979050
Genome Sequencing of Pantoea agglomerans C1 Provides Insights into Molecular and Genetic Mechanisms of Plant Growth-Promotion and Tolerance to Heavy Metals. PMID:31979031
Investigating Nutrient Limitation Role on Improvement of Growth and Poly(3-Hydroxybutyrate) Accumulation by Burkholderia sacchari LMG 19450 From Xylose as the Sole Carbon Source. PMID:31970153
Identifying determinants of bacterial fitness in a model of human gut microbial succession. PMID:31969452
Genomic Analysis of Carbapenemase-Producing Extensively Drug-Resistant Klebsiella pneumoniae Isolates Reveals the Horizontal Spread of p18-43_01 Plasmid Encoding blaNDM-1 in South Africa. PMID:31963608
Twitching motility of Stenotrophomonas maltophilia under iron limitation: In-silico, phenotypic and proteomic approaches. PMID:31957553
Draft genome sequence and nomenclature adjustment of Rhodococcus qingshengii CS98, a cesium-accumulating strain isolated in Japan. PMID:31956519
Comparative Genomics of Streptococcus thermophilus Support Important Traits Concerning the Evolution, Biology and Technological Properties of the Species. PMID:31956321
Complete Genome Sequence of Collection Strain Acinetobacter baumannii ATCC BAA-1790, Used as a Model To Study the Antibiotic Resistance Reversion Induced by Iodine-Containing Complexes. PMID:31948971
Draft Genome Sequence of Desulfofundulus thermobenzoicus subsp. thermosyntrophicus DSM 14055, a Moderately Thermophilic Sulfate Reducer. PMID:31948969
Draft Genome Sequence of Acidianus ambivalens DSM 3772, an Aerobic Thermoacidophilic Sulfur Disproportionator. PMID:31948968
Draft Genome Sequence of Yersinia ruckeri Strain FMV-22, Isolated from Diseased Rainbow Trout (Oncorhynchus mykiss) in Peru. PMID:31948963
Draft Genome Sequence of Rhodococcus aetherivorans JCM 14343T, a Bacterium Capable of Degrading Recalcitrant Noncyclic and Cyclic Ethers. PMID:31948959
Genome Sequence Analysis of Enterobacter sp. C6, Found in the Pitcher Fluids of Sarracenia rosea. PMID:31948957
Complete Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis SD96. PMID:31948956
Carotenoids are used as regulators for membrane fluidity by Staphylococcus xylosus. PMID:31941915
Complete genome sequence of a methicillin-resistant Staphylococcus schleiferi strain from canine otitis externa in Korea. PMID:31940690
A Novel Cyanobacterium Synechococcus elongatus PCC 11802 has Distinct Genomic and Metabolomic Characteristics Compared to its Neighbor PCC 11801. PMID:31932622
Comparative Genomics and Phylogenetic Analyses Suggest Several Novel Species within the Genus Clavibacter, Including Nonpathogenic Tomato-Associated Strains. PMID:31924620
Campylobacter portucalensis sp. nov., a new species of Campylobacter isolated from the preputial mucosa of bulls. PMID:31923228
Beneficial Endophytic Bacteria-Serendipita indica Interaction for Crop Enhancement and Resistance to Phytopathogens. PMID:31921065
The Novel Enterococcus Phage vB_EfaS_HEf13 Has Broad Lytic Activity Against Clinical Isolates of Enterococcus faecalis. PMID:31921055
Actinobacteria as Promising Candidate for Polylactic Acid Type Bioplastic Degradation. PMID:31921021
The Complete Genome of Emcibacter congregatus ZYLT, a Marine Bacterium Encoding a CRISPR-Cas 9 Immune System. PMID:31919672
Draft Genome Sequence of Sideroxydans sp. Strain CL21, an Fe(II)-Oxidizing Bacterium. PMID:31919186
Draft Genome Sequences of 12 Leuconostoc carnosum Strains Isolated from Cooked Ham Packaged in a Modified Atmosphere and from Fresh Sausages. PMID:31919169
Draft Genome Sequence of a Serratia marcescens Strain Isolated from the Pitcher Fluids of a Sarracenia Pitcher Plant. PMID:31919167
Complete Genome Sequence of Lactobacillus plantarum Strain JDARSH, Isolated from Sheep Milk. PMID:31919166
Draft Genome Sequence of Bacillus thuringiensis Strain UNMSM10RA, Isolated from Potato Crop Soil in Peru. PMID:31919164
A Multifunctional Polysaccharide Utilization Gene Cluster in Colwellia echini Encodes Enzymes for the Complete Degradation of κ-Carrageenan, ι-Carrageenan, and Hybrid β/κ-Carrageenan. PMID:31915221
Meta-analysis of Pandemic Escherichia coli ST131 Plasmidome Proves Restricted Plasmid-clade Associations. PMID:31913346
Isolation and Characterization of a Novel Bacteriophage Infecting Carbapenem-Resistant Klebsiella pneumoniae. PMID:31912220
CAMITAX: Taxon labels for microbial genomes. PMID:31909794
PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing. PMID:31899493
The complete genome sequence of the nitrile biocatalyst Rhodocccus rhodochrous ATCC BAA-870. PMID:31898479
Draft Genome Sequences of Lactobacillus helveticus, Lactobacillus fermentum, and Lactobacillus delbrueckii Strains from African Fermented Nono. PMID:31896647
Complete Genome Sequence of Pandoraea pnomenusa TF-18, a Multidrug-Resistant Organism Isolated from the Rhizosphere of Rice (Oryza sativa L. subsp. japonica). PMID:31896624
Draft Genome Sequence of Plant Growth-Promoting Streptomyces sp. Strain SA51, Isolated from Olive Trees. PMID:31896622
High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains. PMID:31896243
Draft genome sequences of Salmonella Oslo isolated from seafood and its laboratory generated auxotrophic mutant. PMID:31892994
Characterization of a new podovirus infecting Paenibacillus larvae. PMID:31889094
Composite genome sequence of Bacillus clausii, a probiotic commercially available as Enterogermina®, and insights into its probiotic properties. PMID:31888501
Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens). PMID:31888476
A Novel Arsenate-Resistant Determinant Associated with ICEpMERPH, a Member of the SXT/R391 Group of Mobile Genetic Elements. PMID:31888308
Genomic insights on heterogeneous resistance to vancomycin and teicoplanin in Methicillin-resistant Staphylococcus aureus: A first report from South India. PMID:31887179
Identification and detection of iha subtypes in LEE-negative Shiga toxin-producing Escherichia coli (STEC) strains isolated from humans, cattle and food. PMID:31879713
Genomic dissection of the most prevalent Listeria monocytogenes clone, sequence type ST87, in China. PMID:31870294
Genetic Determinants of Hydroxycinnamic Acid Metabolism in Heterofermentative Lactobacilli. PMID:31862715
Complete Genome Sequence of Acidithiobacillus Ferrooxidans YNTRS-40, a Strain of the Ferrous Iron- and Sulfur-Oxidizing Acidophile. PMID:31861345
Genomic information on Stenotrophomonas maltophilia ST264 isolated from a cystic fibrosis pediatric patient in Brazil. PMID:31858443
Co-occurrence of Variants of mcr-3 and mcr-8 Genes in a Klebsiella pneumoniae Isolate From Laos. PMID:31849875
Insight into the biology of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members. PMID:31848383
Diverse, Abundant, and Novel Viruses Infecting the Marine Roseobacter RCA Lineage. PMID:31848303
Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust. PMID:31848272
Complete genome sequence of Bacillus velezensis LPL-K103, an antifungal cyclic lipopeptide bacillomycin L producer from the surface of lemon. PMID:31844600
Genome of Bacillus sp. strain QHF158 provides insights into its parasporal inclusions encoded by the S-layer gene. PMID:31836963
Complete Genome Sequence of a Multidrug-Resistant Strain, Escherichia coli ATCC BAA-196, as a Model for Studying Induced Antibiotic Resistance Reversion. PMID:31831610
The enemy from within: a prophage of Roseburia intestinalis systematically turns lytic in the mouse gut, driving bacterial adaptation by CRISPR spacer acquisition. PMID:31827247
Vesicles From Vibrio cholerae Contain AT-Rich DNA and Shorter mRNAs That Do Not Correlate With Their Protein Products. PMID:31824470
Comparative genomics analysis of Nitriliruptoria reveals the genomic differences and salt adaptation strategies. PMID:31820112
Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition. PMID:31814267
Lipopolysaccharide Stimulates the Growth of Bacteria That Contribute to Ruminal Acidosis. PMID:31811042
Isolation and Characterization of a Novel Klebsiella pneumoniae N4-like Bacteriophage KP8. PMID:31810319
Paenibacillus lutrae sp. nov., A Chitinolytic Species Isolated from A River Otter in Castril Natural Park, Granada, Spain. PMID:31810255
Draft Genome Sequence of a Wohlfahrtiimonas chitiniclastica Strain Isolated from Frozen Chicken in Rio De Janeiro, Brazil. PMID:31806738
Genetic, Epigenetic and Phenotypic Diversity of Four Bacillus velezensis Strains Used for Plant Protection or as Probiotics. PMID:31803155
Comparative Genomics Reveals Metabolic Specificity of Endozoicomonas Isolated from a Marine Sponge and the Genomic Repertoire for Host-Bacteria Symbioses. PMID:31801294
Limnoglobus roseus gen. nov., sp. nov., a novel freshwater planctomycete with a giant genome from the family Gemmataceae. PMID:31800383
Novel Multidrug-Resistant Enterococcal Mobile Linear Plasmid pELF1 Encoding vanA and vanM Gene Clusters From a Japanese Vancomycin-Resistant Enterococci Isolate. PMID:31798546
Complete genome sequence and comparative analysis of Streptomyces seoulensis, a pioneer strain of nickel superoxide dismutase. PMID:31797314
Escherichia coli and Salmonella Enteritidis dual-species biofilms: interspecies interactions and antibiofilm efficacy of phages. PMID:31796870
Genome of Labrenzia sp. PHM005 Reveals a Complete and Active Trans-AT PKS Gene Cluster for the Biosynthesis of Labrenzin. PMID:31787953
Transduction as a Potential Dissemination Mechanism of a Clonal qnrB19-Carrying Plasmid Isolated From Salmonella of Multiple Serotypes and Isolation Sources. PMID:31787939
Prevalence of Shigella boydii in Bangladesh: Isolation and Characterization of a Rare Phage MK-13 That Can Robustly Identify Shigellosis Caused by Shigella boydii Type 1. PMID:31787934
Constructing and Characterizing Bacteriophage Libraries for Phage Therapy of Human Infections. PMID:31781060
Draft Genome Sequence of Enterobacter hormaechei Strain MHSD6, a Plant Endophyte Isolated from Medicinal Plant Pellaea calomelanos. PMID:31776223
Complete Genome Sequence of the Carotenoid-Producing Deinococcus sp. Strain AJ005. PMID:31776222
Draft Genome Sequence of an Acinetobacter baumannii Isolate Recovered from a Horse with Conjunctivitis in Germany. PMID:31776218
Comparative genomics of eight Lactobacillus buchneri strains isolated from food spoilage. PMID:31775607
Genome Mining of Marine-Derived Streptomyces sp. SCSIO 40010 Leads to Cytotoxic New Polycyclic Tetramate Macrolactams. PMID:31775228
Analysis of virulence potential of Escherichia coli O145 isolated from cattle feces and hide samples based on whole genome sequencing. PMID:31774847
Comparative Genomics and CAZyme Genome Repertoires of Marine Zobellia amurskyensis KMM 3526T and Zobellia laminariae KMM 3676T. PMID:31771309
Scytodecamide from the Cultured Scytonema sp. UIC 10036 Expands the Chemical and Genetic Diversity of Cyanobactins. PMID:31769581
Comparative analysis of differential proteome-wide protein-protein interaction network of Methanobrevibacter ruminantium M1. PMID:31763465
Draft Genome Sequence of a Bombella apis Strain Isolated from Honey Bees. PMID:31753958
Draft Genome Sequence of the Panton-Valentine Leucocidin-Producing Staphylococcus aureus Sequence Type 154 Strain NRL 08/001, Isolated from a Fatal Case of Necrotizing Pneumonia. PMID:31753953
Phylogeny of Anoxygenic Photosynthesis Based on Sequences of Photosynthetic Reaction Center Proteins and a Key Enzyme in Bacteriochlorophyll Biosynthesis, the Chlorophyllide Reductase. PMID:31752268
Novel Sulfolobus Fuselloviruses with Extensive Genomic Variations. PMID:31748395
Structural Identity of Galactooligosaccharide Molecules Selectively Utilized by Single Cultures of Probiotic Bacterial Strains. PMID:31747272
Pseudomonas sp. COW3 Produces New Bananamide-Type Cyclic Lipopeptides with Antimicrobial Activity against Pythium myriotylum and Pyricularia oryzae. PMID:31744250
Taxogenomics and Systematics of the Genus Pantoea. PMID:31736906
Lysobacter segetis sp. nov., Isolated from Soil. PMID:31728699
Draft Genome Sequence of the Halophilic Pararhodobacter-Like Strain CCB-MM2, Which Has Polyhydroxyalkanoate-Synthesizing Potential. PMID:31727719
Whole-Genome Sequencing of Xanthomonadaceae Strain Alg18-2.2, Isolated from the Saline Lake Gudzhirganskoe in the Republic of Buryatia, Russia. PMID:31727708
Genome Sequence of Pseudomonas sp. Strain ST1, Isolated from Olive (Olea europaea L.) Knot Galls in Croatia. PMID:31727702
Genomic characterization of a pectinolytic isolate of Serratia oryzae isolated from lake water. PMID:31719848
Marine Archaeon Methanosarcina acetivorans Enhances Polyphosphate Metabolism Under Persistent Cadmium Stress. PMID:31708902
Virulence characteristics and antimicrobial resistance of Aeromonas veronii biovar sobria 312M, a clinical isolate. PMID:31707718
Rheinheimera pleomorphica sp. nov., a Novel Alkali-Tolerant Bacteria Isolated from Chilika Lake, India. PMID:31705390
Exfoliative toxin E, a new Staphylococcus aureus virulence factor with host-specific activity. PMID:31704997
Long-distance transmission of pathogenic Vibrio species by migratory waterbirds: a potential threat to the public health. PMID:31704994
Draft Genome Sequences of Anaplasma marginale Strains MEX-15-099-01 and MEX-31-096-01, Two Mexican Isolates with Different Degrees of Virulence. PMID:31699769
The Whole-Genome Sequence of Plasmid-Bearing Staphylococcus argenteus Strain B3-25B from Retail Beef Liver Encodes the Type VII Secretion System and Several Virulence Factors. PMID:31699758
Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages. PMID:31698849
Draft genome sequence of Bacillus paralicheniformis TRQ65, a biological control agent and plant growth-promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) rhizosphere in the Yaqui Valley, Mexico. PMID:31696041
Isolation and Characterization of a Novel Pathogenic Strain of Ehrlichia minasensis. PMID:31694172
Resistome Profiles, Plasmid Typing, and Whole-Genome Phylogenetic Tree Analyses of BlaNDM-9 and Mcr-1 Co-Harboring Escherichia coli ST617 from a Patient without a History of Farm Exposure in Korea. PMID:31683614
Testosterone Degradative Pathway of Novosphingobium tardaugens. PMID:31683600
Capsular Polysaccharide Is a Receptor of a Clostridium perfringens Bacteriophage CPS1. PMID:31683584
Metabolic Overlap in Environmentally Diverse Microbial Communities. PMID:31681424
Whole-Genome Sequence of a Unique Elioraea Species Strain Isolated from a Yellowstone National Park Hot Spring. PMID:31672742
Comparative Study on A Novel Pathogen of European Seabass. Diversity of Aeromonas veronii in the Aegean Sea. PMID:31671797
Complete Genome of the Chitin-Degrading Bacterium, Paenibacillus xylanilyticus W4. PMID:31670768
Identification of the symbiosis island of Bradyrhizobium paxllaeri LMTR 21T. PMID:31667798
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. PMID:31667520
Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi. PMID:31659686
Brevibacillus antibioticus sp. nov., with a broad range of antibacterial activity, isolated from soil in the Nakdong River. PMID:31659685
Degradation Mechanism of 4-Chlorobiphenyl by Consortium of Pseudomonas sp. Strain CB-3 and Comamonas sp. Strain CD-2. PMID:31650227
Draft Genome Sequence of Kosakonia radicincitans UYSO10, an Endophytic Plant Growth-Promoting Bacterium of Sugarcane (Saccharum officinarum). PMID:31649079
Complete Genome Sequence of Sphingobacterium psychroaquaticum Strain SJ-25, an Aerobic Bacterium Capable of Suppressing Fungal Pathogens. PMID:31646352
The ant Lasius niger is a new source of bacterial enzymes with biotechnological potential for bleaching dye. PMID:31645628
Functional screening of a soil metagenome for DNA endonucleases by acquired resistance to bacteriophage infection. PMID:31643043
A mutualistic interaction between Streptomyces bacteria, strawberry plants and pollinating bees. PMID:31641114
Characterization of Antibacterial Strains against Kiwifruit Bacterial Canker Pathogen. PMID:31632222
Effect of Quorum Sensing on the Ability of Desulfovibrio vulgaris To Form Biofilms and To Biocorrode Carbon Steel in Saline Conditions. PMID:31628147
Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp. PMID:31626703
Isolation of Legionella pneumophila by Co-culture with Local Ameba, Canada. PMID:31625866
Draft Genome Sequence of Geobacillus sp. Strain LEMMJ02, a Thermophile Isolated from Deception Island, an Active Volcano in Antarctica. PMID:31624166
Genomic Insights Into Five Strains of Lactobacillus plantarum With Biotechnological Potential Isolated From chicha, a Traditional Maize-Based Fermented Beverage From Northwestern Argentina. PMID:31611862
Geomonas oryzae gen. nov., sp. nov., Geomonas edaphica sp. nov., Geomonas ferrireducens sp. nov., Geomonas terrae sp. nov., Four Ferric-Reducing Bacteria Isolated From Paddy Soil, and Reclassification of Three Species of the Genus Geobacter as Members of the Genus Geomonas gen. nov. PMID:31608033
Bacterial Metabolites Produced Under Iron Limitation Kill Pinewood Nematode and Attract Caenorhabditis elegans. PMID:31608025
Disruption of hmgA by DNA Duplication is Responsible for Hyperpigmentation in a Vibrio anguillarum Strain. PMID:31601906
Draft Whole-Genome Sequence of a Novel Chryseobacterium viscerum Strain Isolated from Fresh Water at Dripping Springs, New Mexico. PMID:31601674
Draft Genome Sequence of Janthinobacterium sp. Strain PC23-8, Isolated from a Freshwater Stream Impacted by Acid Mine Drainage. PMID:31601663
Complete Genome Sequence of Micrococcus luteus Strain SGAir0127, Isolated from Indoor Air Samples from Singapore. PMID:31601656
Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100. PMID:31592759
Draft genome analysis of the endophyte, Bacillus toyonensis COPE52, a blueberry (Vaccinium spp. var. Biloxi) growth-promoting bacterium. PMID:31588394
Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru. PMID:31585991
Characterizing species interactions that contribute to biofilm formation in a multispecies model of a potable water bacterial community. PMID:31585061
Draft Genome Sequence of Brevibacillus sp. Strain LEMMJ03, Isolated from an Antarctic Volcano. PMID:31582458
Coproduction Of MCR-9 And NDM-1 By Colistin-Resistant Enterobacter hormaechei Isolated From Bloodstream Infection. PMID:31571950
Genome Mining and Comparative Pathogenomic Analysis of An Endemic Methicillin-Resistant Staphylococcus Aureus (MRSA) Clone, ST612-CC8-t1257-SCCmec_IVd(2B), Isolated in South Africa. PMID:31569754
Genetic characterization of a novel sequence type of multidrug-resistant Citrobacter freundii strain recovered from wastewater treatment plant. PMID:31564927
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). PMID:31562384
ICEKp2: description of an integrative and conjugative element in Klebsiella pneumoniae, co-occurring and interacting with ICEKp1. PMID:31554924
The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity. PMID:31550268
Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates. PMID:31548686
Emergence of a non-sporulating secondary phenotype in Clostridium (Clostridioides) difficile ribotype 078 isolated from humans and animals. PMID:31548637
Molecular Characterization of Equine Staphylococcus aureus Isolates Exhibiting Reduced Oxacillin Susceptibility. PMID:31540335
Diversity and Host Specificity Revealed by Biological Characterization and Whole Genome Sequencing of Bacteriophages Infecting Salmonella enterica. PMID:31540091
Genome Insights into the Novel Species Microvirga brassicacearum, a Rapeseed Endophyte with Biotechnological Potential. PMID:31540065
Complete Genome Sequence of Lysinibacillus sp. Strain SGAir0095, Isolated from Tropical Air Samples Collected in Singapore. PMID:31537660
Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds. PMID:31534997
Draft Genome Sequence of Ciprofloxacin and Ceftriaxone Resistant Campylobacter jejuni MM26-781 Assigned to Novel ST Isolated From Common Pigeon in Lithuania. PMID:31523125
Complete Genome Sequence of Phreatobacter sp. Strain NMCR1094, a Formate-Utilizing Bacterium Isolated from a Freshwater Stream. PMID:31515346
Genome Sequence of the Tropical Atmosphere Bacterium Pontibacter sp. Strain SGAir0037. PMID:31515337
Characteristics and Complete Genome Analysis of Bacillus asahii OM18, a Bacterium in Relation to Soil Fertility in Alkaline Soils Under Long-Term Organic Manure Amendment. PMID:31511964
Chlamydia pan-genomic analysis reveals balance between host adaptation and selective pressure to genome reduction. PMID:31510914
Functional and Proteomic Analysis of Streptococcus pyogenes Virulence Upon Loss of Its Native Cas9 Nuclease. PMID:31507572
New Halonotius Species Provide Genomics-Based Insights Into Cobalamin Synthesis in Haloarchaea. PMID:31507553
Whole genome sequence analysis reveals high genetic variation of newly isolated Acidithiobacillus ferrooxidans IO-2C. PMID:31506467
Evaluation of in vitro activity of ceftazidime/avibactam and ceftolozane/tazobactam against MDR Pseudomonas aeruginosa isolates from Qatar. PMID:31504587
The complete genome sequence of Bifidobacterium animalis subsp. lactis 01 and its integral components of antioxidant defense system. PMID:31501753
Complete Genome Sequence of a Shiga Toxin-Converting Bacteriophage, Escherichia Phage Lys12581Vzw, Induced from an Outbreak Shiga Toxin-Producing Escherichia coli Strain. PMID:31488531
Whole genome sequencing and identification of host-interactive genes in the rice endophytic Leifsonia sp. ku-ls. PMID:31482368
Complete Nucleotide Sequence of a Novel Plasmid Bearing the High-Level Tigecycline Resistance Gene tet(X4). PMID:31481444
Conjugative IncX1 Plasmid Harboring Colistin Resistance Gene mcr-5.1 in Escherichia coli Isolated from Chicken Rice Retailed in Singapore. PMID:31481439
Sex-Specific Linkages Between Taxonomic and Functional Profiles of Tick Gut Microbiomes. PMID:31475121
Cadmium and Selenate Exposure Affects the Honey Bee Microbiome and Metabolome, and Bee-Associated Bacteria Show Potential for Bioaccumulation. PMID:31471302
Streptococcus pyogenes Transcriptome Changes in the Inflammatory Environment of Necrotizing Fasciitis. PMID:31471300
Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment. PMID:31467863
Complete Genome Sequence of Streptomyces sp. Strain SGAir0924, an Actinobacterium Isolated from Outdoor Air in Singapore. PMID:31467108
Complete Genome Sequence of Subcluster 5.2 Synechococcus sp. Strain CB0101, Isolated from the Chesapeake Bay. PMID:31467092
Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally. PMID:31465454
Mucilaginibacter limnophilus sp. nov., isolated from a lake. PMID:31463791
Methylobacterium terrae sp. nov., a radiation-resistant bacterium isolated from gamma ray-irradiated soil. PMID:31463788
Genetic and Biochemical Evidence That Enterococcus faecalis Gr17 Produces a Novel and Sec-Dependent Bacteriocin, Enterocin Gr17. PMID:31456764
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms. PMID:31455806
Extensive Thioautotrophic Gill Endosymbiont Diversity within a Single Ctena orbiculata (Bivalvia: Lucinidae) Population and Implications for Defining Host-Symbiont Specificity and Species Recognition. PMID:31455638
bla NDM-5 carried by a hypervirulent Klebsiella pneumoniae with sequence type 29. PMID:31452874
Characterization and Comparative Analysis of the Staphylococcus aureus Genomic Island vSaβ: an In Silico Approach. PMID:31451542
Validation of Genetic Markers Associated to Oxygen Availability in Low-Grade Copper Bioleaching Systems: An Industrial Application. PMID:31447825
Culture-Dependent Bioprospecting of Bacterial Isolates From the Canadian High Arctic Displaying Antibacterial Activity. PMID:31447822
In silico Analysis Reveals Distribution of Quorum Sensing Genes and Consistent Presence of LuxR Solos in the Pandoraea Species. PMID:31447806
Whole-genome sequence analysis of multidrug-resistant uropathogenic strains of Escherichia coli from Mexico. PMID:31447566
Complete Genome Sequence of Pseudomonas sp. Strain SGAir0191, Isolated from Tropical Air Collected in Singapore. PMID:31439709
Complete Genome Sequence of Microbacterium sp. Strain SGAir0570, Isolated from Tropical Air Collected in Singapore. PMID:31439708
Virgicin, a novel lanthipeptide from Virgibacillus sp. strain AK90 exhibits inhibitory activity against Gram-positive bacteria. PMID:31432254
Anaerobic Degradation of Non-Methane Alkanes by "Candidatus Methanoliparia" in Hydrocarbon Seeps of the Gulf of Mexico. PMID:31431553
Emergence of mobile tigecycline resistance mechanism in Escherichia coli strains from migratory birds in China. PMID:31429665
Draft genome sequence data and analysis of Shinella sp. strain JR1-6 isolated from nitrate- and radionuclide-contaminated groundwater in Russia. PMID:31428667
Whole Genome Sequencing of Extended-Spectrum Beta-Lactamase (ESBL)-Producing Escherichia coli Isolated From a Wastewater Treatment Plant in China. PMID:31428078
Genome Sequence of Pseudomonas Phage UMP151, Isolated from the Female Bladder Microbiota. PMID:31416880
Whole-Genome Sequences of Eight Clinical Isolates of Burkholderia pseudomallei from Melioidosis Patients in Eastern Sri Lanka. PMID:31416870
Draft Genome Sequence of Bacillus thuringiensis DPC6431, Producer of the Bacteriocin Thuricin CD. PMID:31416857
Large Plasmid Complement Resolved: Complete Genome Sequencing of Lactobacillus plantarum MF1298, a Candidate Probiotic Strain Associated with Unfavorable Effect. PMID:31416278
Complete genome and plasmid sequence of a novel Bacillus sp. BD59S, a parasporal protein synthesizing bacterium. PMID:31406640
Antimicrobial properties of the novel bacterial isolate Paenibacilllus sp. SMB1 from a halo-alkaline lake in India. PMID:31399607
Complementary Antibacterial Effects of Bacteriocins and Organic Acids as Revealed by Comparative Analysis of Carnobacterium spp. from Meat. PMID:31399404
Complete Genome Sequence of Brachybacterium sp. Strain SGAir0954, Isolated from Singapore Air. PMID:31395638
Complete Genome Sequence of Agrococcus sp. Strain SGAir0287, Isolated from Tropical Air Collected in Singapore. PMID:31395637
Complete Genome Sequence of Nissabacter sp. Strain SGAir0207, Isolated from an Air Sample Collected in Singapore. PMID:31395634
Draft Genome Sequence of Massilia sp. Strain ONC3, a Novel Bacterial Species of the Oxalobacteraceae Family Isolated from Garden Soil. PMID:31395627
Draft Genome Sequence of Brevundimonas sp. Strain T2.26MG-97, Isolated from a Rock Core Sample from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt. PMID:31395626
Whole-genome sequence data and analysis of Lactobacillus delbrueckii subsp. lactis ACA-DC 178 isolated from Greek Kasseri cheese. PMID:31388525
Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning. PMID:31387929
Comparative Genomics and Phenotypic Investigations Into Antibiotic, Heavy Metal, and Disinfectant Susceptibilities of Salmonella enterica Strains Isolated in Australia. PMID:31379776
De novo genome assembly and comparative annotation reveals metabolic versatility in cellulolytic bacteria from cropland and forest soils. PMID:31378834
Valinomycin, produced by Streptomyces sp. S8, a key antifungal metabolite in large patch disease suppressiveness. PMID:31375920
The population structure of Clostridium tetani deduced from its pan-genome. PMID:31375706
Draft Genome Sequence of the Necrotrophic Plant-Pathogenic Bacterium Pectobacterium carotovorum subsp. carotovorum Strain LMG 2410. PMID:31371540
Retrospective Analysis of Archived Pyrazinamide Resistant Mycobacterium tuberculosis Complex Isolates from Uganda-Evidence of Interspecies Transmission. PMID:31362370
Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli. PMID:31361781
Whole-genome comparison between reference sequences and oyster Vibrio vulnificus C-genotype strains. PMID:31361763
Proteomics and Docking Study Targeting Penicillin-Binding Protein and Penicillin-Binding Protein2a of Methicillin-Resistant Staphylococcus aureus Strain SO-1977 Isolated from Sudan. PMID:31360059
Comparative genomics and functional analysis of a highly adhesive dairy Lactobacillus paracasei subsp. paracasei IBB3423 strain. PMID:31359102
Pseudomonas Cyclic Lipopeptides Suppress the Rice Blast Fungus Magnaporthe oryzae by Induced Resistance and Direct Antagonism. PMID:31354771
Mucilaginibacter terrigena sp. nov. sp., A Novel Member of the Family Sphingobacteriaceae. PMID:31350573
Plantibacter flavus, Curtobacterium herbarum, Paenibacillus taichungensis, and Rhizobium selenitireducens Endophytes Provide Host-Specific Growth Promotion of Arabidopsis thaliana, Basil, Lettuce, and Bok Choy Plants. PMID:31350315
Synergistic Action of Phage and Antibiotics: Parameters to Enhance the Killing Efficacy Against Mono and Dual-Species Biofilms. PMID:31349628
Draft Whole-Genome Sequences of Haemophilus influenzae Biogroup aegyptius Strains Isolated from Five Brazilian Purpuric Fever Cases and One Conjunctivitis Case. PMID:31346025
Assembly of Complete Genome Sequences of Negative-Control and Experimental Strain Variants of Staphylococcus aureus ATCC BAA-39 Selected under the Effect of the Drug FS-1, Which Induces Antibiotic Resistance Reversion. PMID:31346020
Isolation, Characterisation and Complete Genome Sequence of a Tequatrovirus Phage, Escherichia phage KIT03, Which Simultaneously Infects Escherichia coli O157:H7 and Salmonella enterica. PMID:31342082
Bacteremia and Skin Infections in Four Patients Caused by Helicobacter-Like Organisms. PMID:31338379
oqxAB-Positive IncHI2 Plasmid pHXY0908 Increase Salmonella enterica Serotype Typhimurium Strains Tolerance to Ciprofloxacin. PMID:31334135
Whole Genome Sequencing-Based Comparison of Food Isolates of Cronobacter sakazakii. PMID:31333604
Genomic Insights Into Plant-Growth-Promoting Potentialities of the Genus Frankia. PMID:31333602
Pan-Genomic and Polymorphic Driven Prediction of Antibiotic Resistance in Elizabethkingia. PMID:31333599
Comparative genomic analysis revealed great plasticity and environmental adaptation of the genomes of Enterococcus faecium. PMID:31331270
Comparative Analysis of Listeria monocytogenes Plasmids and Expression Levels of Plasmid-Encoded Genes during Growth under Salt and Acid Stress Conditions. PMID:31330827
Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341. PMID:31324626
Draft Genome Sequences of Six Bacteria Isolated from the Benham Bank, Philippine Rise, Philippines. PMID:31320444
Draft Genome Sequence of Geotoga petraea Strain HO-Geo1, Isolated from a Petroleum Reservoir in Russia. PMID:31320436
Draft Genome Sequence of Methylocystis heyeri H2T, a Methanotroph with Habitat-Specific Adaptations, Isolated from a Peatland Ecosystem. PMID:31320431
Draft Genome Sequence of a Fermenting Bacterium, Soehngenia sp. Strain 1933P, Isolated from a Petroleum Reservoir in Azerbaijan. PMID:31320421
Identification of a Novel Plasmid Lineage Associated With the Dissemination of Metallo-β-Lactamase Genes Among Pseudomonads. PMID:31312195
Whole genome analysis reveals new insights into the molecular characteristics of Clostridioides difficile NAP1/BI/027/ST1 clinical isolates in the People's Republic of China. PMID:31308704
Genome data of Stenotrophomonas maltophilia DF07 collected from polluted river sediment reveals an opportunistic pathogen and a potential antibiotic reservoir. PMID:31304216
Draft genome sequence data of Bifidobacterium longum strain VKPM Ac-1636, a prospective probiotic isolated from human gut. PMID:31304205
Genomic analysis of a novel Rhodococcus (Prescottella) equi isolate from a bovine host. PMID:31302711
Comparative Analysis of Draft Genome Sequence of Rhodococcus sp. Eu-32 with Other Rhodococcus Species for Its Taxonomic Status and Sulfur Metabolism Potential. PMID:31300840
Genome Sequence of Lipopeptide- and Antioxidant-Producing Strain Bacillus velezensis NWUMFkBS10.5. PMID:31296686
Draft Genome Sequence of Bradyrhizobium elkanii Strain SEMIA 938, Used in Commercial Inoculants for Lupinus spp. in Brazil. PMID:31296682
Finished Genome Sequence of the Indole-3-Acetic Acid-Catabolizing Bacterium Pseudomonas putida 1290. PMID:31296680
Genomic insights into plant growth promoting rhizobia capable of enhancing soybean germination under drought stress. PMID:31296165
Detection of Mycoplasma anatis, M. anseris, M. cloacale and Mycoplasma sp. 1220 in waterfowl using species-specific PCR assays. PMID:31295269
Genome sequencing and analysis of Salmonella enterica subsp. enterica serovar Stanley UPM 517: Insights on its virulence-associated elements and their potentials as vaccine candidates. PMID:31293824
Bap and Cell Surface Hydrophobicity Are Important Factors in Staphylococcus xylosus Biofilm Formation. PMID:31293539
Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles. PMID:31287781
Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum-A Novel Lineage of Lactobacillus Phages Comprising Five New Members. PMID:31277436
Genetic and Phenotypic Features of a Novel Acinetobacter Species, Strain A47, Isolated From the Clinical Setting. PMID:31275288
Investigating Host Microbiota Relationships Through Functional Metagenomics. PMID:31275257
Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL341. PMID:31270938
Complete Genome Sequences of 10 Xanthomonas oryzae pv. oryzae Bacteriophages. PMID:31270189
Carotenoids from UV-resistant Antarctic Microbacterium sp. LEMMJ01. PMID:31266976
Generation of a Prophage-Free Variant of the Fast-Growing Bacterium Vibrio natriegens. PMID:31253674
Antibiotic resistance genes in the Actinobacteria phylum. PMID:31250336
Draft Whole-Genome Sequences of 16 Campylobacter jejuni Isolates Obtained from Wild Birds. PMID:31248999
Draft Genome Sequences of Flavobacterium columnare Strains ARS1 and BGFS27, Isolated from Channel Catfish (Ictalurus punctatus). PMID:31248995
Draft Genome Sequences of Three Rhizospheric Plant Growth-Promoting Bacteria. PMID:31248993
Phenomics and Genomics Reveal Adaptation of Virgibacillus dokdonensis Strain 21D to Its Origin of Isolation, the Seawater-Brine Interface of the Mediterranean Sea Deep Hypersaline Anoxic Basin Discovery. PMID:31244812
Comparative Genomics of Wild Bee and Flower Isolated Lactobacillus Reveals Potential Adaptation to the Bee Host. PMID:31243442
Diverse hydrogen production and consumption pathways influence methane production in ruminants. PMID:31243332
Plasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli. PMID:31235960
Comparative Genome Analysis of Uropathogenic Morganella morganii Strains. PMID:31231616
Phylogenetic determinants of toxin gene distribution in genomes of Brevibacillus laterosporus. PMID:31226484
Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium. PMID:31221646
Screening methods for detection of ancient Mycobacterium tuberculosis complex fingerprints in next-generation sequencing data derived from skeletal samples. PMID:31220249
Comparative genomics of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members emphasizing tRNA and non-coding RNA. PMID:31215393
Nationwide Stepwise Emergence and Evolution of Multidrug-Resistant Campylobacter jejuni Sequence Type 5136, United Kingdom. PMID:31211671
Metagenomic Insights into the Bacterial Functions of a Diesel-Degrading Consortium for the Rhizoremediation of Diesel-Polluted Soil. PMID:31207997
Metabolic engineering of Corynebacterium glutamicum S9114 based on whole-genome sequencing for efficient N-acetylglucosamine synthesis. PMID:31198861
Whole-Genome Shotgun Sequence of Drug-Resistant Staphylococcus aureus Strain SA9, Isolated from a Slaughterhouse Chicken Carcass in South Africa. PMID:31196926
Draft Genome Sequence of Mesosutterella multiformis JCM 32464T, a Member of the Family Sutterellaceae, Isolated from Human Feces. PMID:31196925
Whole-Genome Sequence of Brucella melitensis Strain B7, Isolated from a Blood Sample of a Brucellosis Patient from Hulunbuir, Inner Mongolia, China. PMID:31196914
Comparative genomic analysis of Pectobacterium carotovorum subsp. brasiliense SX309 provides novel insights into its genetic and phenotypic features. PMID:31195968
Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome. PMID:31194675
Draft genome sequence of a cold-adapted phosphorous-solubilizing Pseudomonas koreensis P2 isolated from Sela Lake, India. PMID:31192081
Detection and Genomic Characterization of a Morganella morganii Isolate From China That Produces NDM-5. PMID:31191484
Identification of Proteins and Genes Expressed by Methylophaga thiooxydans During Growth on Dimethylsulfide and Their Presence in Other Members of the Genus. PMID:31191477
Genomic analysis of methicillin-resistant Staphylococcus aureus strain SO-1977 from Sudan. PMID:31185900
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2. PMID:31182796
Isolation and Characterization T4- and T7-Like Phages that Infect the Bacterial Plant Pathogen Agrobacterium tumefaciens. PMID:31181591
Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment. PMID:31181071
The nematicide Serratia plymuthica M24T3 colonizes Arabidopsis thaliana, stimulates plant growth, and presents plant beneficial potential. PMID:31177380
Complete genome sequence and phylogenetic analysis of nosocomial pathogen Acinetobacter nosocomialis strain NCTC 8102. PMID:31177378
Anaerobic hydrocarbon degradation in candidate phylum 'Atribacteria' (JS1) inferred from genomics. PMID:31171858
Vibrio sp. dhg as a platform for the biorefinery of brown macroalgae. PMID:31171782
Draft Genome Sequence of Bacillus coagulans MA-13, a Thermophilic Lactic Acid Producer from Lignocellulose. PMID:31171617
Complete Genome Sequence of Hospital-Acquired Methicillin-Resistant Staphylococcus aureus Strain WCUH29. PMID:31171611
Draft Genome Sequences of Novel Sequence Type 3559 Carbapenem-Resistant Klebsiella pneumoniae Isolates Recovered from the Environment. PMID:31171609
Effect of ethanol supplementation on the transcriptional landscape of bionanocellulose producer Komagataeibacter xylinus E25. PMID:31168651
Temperate Bacteriophages from Chronic Pseudomonas aeruginosa Lung Infections Show Disease-Specific Changes in Host Range and Modulate Antimicrobial Susceptibility. PMID:31164451
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes. PMID:31163637
Secondary Metabolites of Onygenales Fungi Exemplified by Aioliomyces pyridodomos. PMID:31155876
Carbohydrate Hydrolytic Potential and Redundancy of an Anaerobic Digestion Microbiome Exposed to Acidosis, as Uncovered by Metagenomics. PMID:31152018
The Amipurimycin and Miharamycin Biosynthetic Gene Clusters: Unraveling the Origins of 2-Aminopurinyl Peptidyl Nucleoside Antibiotics. PMID:31150226
Genome Sequences of Bacillus sporothermodurans Strains Isolated from Ultra-High-Temperature Milk. PMID:31147427
Whole genome sequence of Vibrio cholerae directly from dried spotted filter paper. PMID:31145741
ICE SXT vs. ICESh95: Co-existence of Integrative and Conjugative Elements and Competition for a New Host. PMID:31142760
Novel Genes and Metabolite Trends in Bifidobacterium longum subsp. infantis Bi-26 Metabolism of Human Milk Oligosaccharide 2'-fucosyllactose. PMID:31138818
The Arginine Deiminase Operon Is Responsible for a Fitness Trade-Off in Extended-Spectrum-β-Lactamase-Producing Strains of Escherichia coli. PMID:31138573
Biphenyl/PCB Degrading bph Genes of Ten Bacterial Strains Isolated from Biphenyl-Contaminated Soil in Kitakyushu, Japan: Comparative and Dynamic Features as Integrative Conjugative Elements (ICEs). PMID:31137913
Genome Analysis of Entomopathogenic Bacillus sp. ABP14 Isolated from a Lignocellulosic Compost. PMID:31135033
Characterisation of a solvent-tolerant haloarchaeal (R)-selective transaminase isolated from a Triassic period salt mine. PMID:31123770
Complete Genome Sequence of the Plantaricin-Sensitive Strain Lactobacillus plantarum NCIMB 700965. PMID:31123021
Draft Genome Sequence of Nitrosomonas sp. Strain APG5, a Betaproteobacterial Ammonia-Oxidizing Bacterium Isolated from Beach Sand. PMID:31123020
The RstAB System Impacts Virulence, Motility, Cell Morphology, Penicillin Tolerance and Production of Type II Secretion System-Dependent Factors in the Fish and Human Pathogen Photobacterium damselae subsp. damselae. PMID:31105680
Draft Genome Sequence of Pseudomonas koreensis Strain AB36, Isolated from Gold Mining Soil. PMID:31097496
Genomic analysis of Indian strains of Salmonella enterica subsp. enterica serovar Typhi indicates novel genetic repertoire for pathogenicity and adaptations. PMID:31089918
Life at Home and on the Roam: Genomic Adaptions Reflect the Dual Lifestyle of an Intracellular, Facultative Symbiont. PMID:31086829
Revisiting the Evolution and Taxonomy of Clostridia, a Phylogenomic Update. PMID:31076745
Environmental Evidence for and Genomic Insight into the Preference of Iron-Oxidizing Bacteria for More-Corrosion-Resistant Stainless Steel at Higher Salinities. PMID:31076431
Draft Genome Sequence of a Cold-Adapted Pseudomonas sp. Strain, BGI-2, Isolated from the Ice of Batura Glacier, Pakistan. PMID:31072903
Genome Sequence of Marine-Derived Streptomyces sp. Strain F001, a Producer of Akashin A and Diazaquinomycins. PMID:31072893
Whole-Genome Sequence of Acinetobacter baumannii HUMV-3743, Isolated from a Human Wound Exudate. PMID:31072890
System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris. PMID:31072303
A genome-scale metabolic network reconstruction of extremely halophilic bacterium Salinibacter ruber. PMID:31071110
In silico Identification of Serovar-Specific Genes for Salmonella Serotyping. PMID:31068916
Draft genome sequence of Bacillus megaterium TRQ8, a plant growth-promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) rhizosphere in the Yaqui Valley, Mexico. PMID:31065501
New Bacteriophages against Emerging Lineages ST23 and ST258 of Klebsiella pneumoniae and Efficacy Assessment in Galleria mellonella Larvae. PMID:31058805
Genomic Characterization of Arcobacter butzleri Isolated From Shellfish: Novel Insight Into Antibiotic Resistance and Virulence Determinants. PMID:31057492
Exploring the piezotolerant/piezophilic microbial community and genomic basis of piezotolerance within the deep subsurface Deccan traps. PMID:31049708
Genome Sequence of Streptomyces cavourensis 1AS2a, a Rhizobacterium Isolated from the Brazilian Cerrado Biome. PMID:31048389
First Complete Genome Sequence of Haematobacter massiliensis OT1 (Chromosome and Multiple Plasmids), Isolated from Human Skin. PMID:31048379
New insights into the genome of Rhodococcus ruber strain Chol-4. PMID:31046661
Efficacy and safety assessment of two enterococci phages in an in vitro biofilm wound model. PMID:31040333
Plasmids of Shigella flexneri serotype 1c strain Y394 provide advantages to bacteria in the host. PMID:31035948
Evolutionary Relatedness and Classification of Tumor-Inducing and Opine-Catabolic Plasmids in Three Rhizobium rhizogenes Strains Isolated from the Same Crown Gall Tumor. PMID:31028704
Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes. PMID:31028022
Prevalence and Diversity Analysis of Candidate Prophages to Provide An Understanding on Their Roles in Bacillus Thuringiensis. PMID:31027262
Gene Determinants for Mercury Bioremediation as Revealed by Draft Genome Sequence Analysis of Stenotrophomonas sp. Strain MA5. PMID:31023812
Genome Sequence of a Facklamia hominis Isolate from a Patient with Urosepsis. PMID:31023809
Genome Sequences of a Staphylococcus aureus Clinical Isolate, Strain SMA0034-04 (UGA22), from Siaya County Referral Hospital in Siaya, Kenya. PMID:31023806
Genome Sequence of Staphylococcus pettenkoferi Strain SMA0010-04 (UGA20), a Clinical Isolate from Siaya County Referral Hospital in Siaya, Kenya. PMID:31023805
Systematic Affiliation and Genome Analysis of Subtercola vilae DB165T with Particular Emphasis on Cold Adaptation of an Isolate from a High-Altitude Cold Volcano Lake. PMID:31018526
Draft genome sequence and analysis of Klebsiella oxytoca strain NK-1 isolated from ureteral stent. PMID:31011596
Complete genome sequence of natural rubber-degrading, gram-negative bacterium, Rhizobacter gummiphilus strain NS21T. PMID:31011550
Taxono-genomics description of 'Lactobacillus raoultii sp. nov.', strain Marseille-P4006T, a new Lactobacillus species isolated from the female genital tract of a patient with bacterial vaginosis. PMID:31011428
Genomic Features, Comparative Genomic Analysis, and Antimicrobial Susceptibility Patterns of Chryseobacterium arthrosphaerae Strain ED882-96 Isolated in Taiwan. PMID:31010035
A Forward Chemical Genetic Screen Reveals Gut Microbiota Metabolites That Modulate Host Physiology. PMID:31006530
Characterization and genome analysis of a novel bacteriophage vB_SpuP_Spp16 that infects Salmonella enterica serovar pullorum. PMID:31004278
Genome sequencing of Burkholderia contaminans LTEB11 reveals a lipolytic arsenal of biotechnological interest. PMID:31001795
Isolation and characterisation of pVa-21, a giant bacteriophage with anti-biofilm potential against Vibrio alginolyticus. PMID:31000791
Whole Genome Sequencing of Extended Spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae Isolated from Hospitalized Patients in KwaZulu-Natal, South Africa. PMID:31000772
Genome Sequence of a Staphylococcus xylosus Clinical Isolate, Strain SMA0341-04 (UGA5), from Siaya County Referral Hospital in Siaya, Kenya. PMID:31000562
Draft Genome Sequence of Pediococcus acidilactici Strain LPBC161, Isolated from Mature Coffee Cherries during Natural Fermentation. PMID:31000559
Whole-Genome Sequence of the Novel Rubrobacter taiwanensis Strain Yellowstone, Isolated from Yellowstone National Park. PMID:31000556
Draft Genome Sequence of Paraburkholderia sp. UYCP14C, a Rhizobium Strain Isolated from Root Nodules of Calliandra parvifolia. PMID:31000547
Genome Sequence of Bordetella pertussis Vaccine Strain BP 165. PMID:31000545
Complete Genome Sequences of Escherichia coli Phages vB_EcoM-EP75 and vB_EcoP-EP335. PMID:31000539
Draft Genome Sequence of Rhodoplanes sp. Strain T2.26MG-98, Isolated from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt. PMID:31000538
virMine: automated detection of viral sequences from complex metagenomic samples. PMID:30993039
Biomimetic hydroxyapatite nanocrystals are an active carrier for Salmonella bacteriophages. PMID:30992664
Genome analysis of Paenibacillus polymyxa A18 gives insights into the features associated with its adaptation to the termite gut environment. PMID:30988376
Marine Bacterium Vibrio sp. CB1-14 Produces Guanidine Alkaloid 6-epi-Monanchorin, Previously Isolated from Marine Polychaete and Sponges. PMID:30987405
Impacts of indoor surface finishes on bacterial viability. PMID:30980566
Community Ecology of Deinococcus in Irradiated Soil. PMID:30980101
Data on draft genome sequence of Bacillus sp. strain VKPM B-3276 isolated from Culex pipiens larvae. PMID:30976634
Large Enriched Fragment Targeted Sequencing (LEFT-SEQ) Applied to Capture of Wolbachia Genomes. PMID:30976027
Draft Genome Sequence of Lactobacillus plantarum CRL681, Isolated from Argentinean Artisanal Fermented Sausages. PMID:30975815
Draft Genome Sequences of Two Staphylococcus warneri Clinical Isolates, Strains SMA0023-04 (UGA3) and SMA0670-05 (UGA28), from Siaya County Referral Hospital, Siaya, Kenya. PMID:30975813
Complete Genome Sequence of Vibrio anguillarum Nontailed Bacteriophage NO16. PMID:30975794
Phenotypic and Genotypic Characterization of Acinetobacter spp. Panel Strains: A Cornerstone to Facilitate Antimicrobial Development. PMID:30972044
Genomic and Functional Characterization of Enterococcus mundtii QAUEM2808, Isolated From Artisanal Fermented Milk Product Dahi. PMID:30972030
Comparative genomic analysis unravels the transmission pattern and intra-species divergence of acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio parahaemolyticus strains. PMID:30968246
Characterization and Transcriptome Studies of Autoinducer Synthase Gene from Multidrug Resistant Acinetobacter baumannii Strain 863. PMID:30965610
Comparative genome sequencing and analyses of Mycobacterium cosmeticum reveal potential for biodesulfization of gasoline. PMID:30964891
Comparative genomics reveals a lack of evidence for pigeons as a main source of stx2f-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes. PMID:30953471
A Phage-Like Plasmid Carrying bla KPC-2 Gene in Carbapenem-Resistant Pseudomonas aeruginosa. PMID:30949157
Enterococcus faecalis Bacteriophage 156 Is an Effective Biotechnological Tool for Reducing the Presence of Tyramine and Putrescine in an Experimental Cheese Model. PMID:30949154
Insertion sequences drive the emergence of a highly adapted human pathogen. PMID:30946644
Horizontal Transfer of Antimicrobial Resistance Determinants Among Enteric Pathogens Through Bacterial Conjugation. PMID:30941540
Characterization of Two Pseudomonas aeruginosa Viruses vB_PaeM_SCUT-S1 and vB_PaeM_SCUT-S2. PMID:30939832
Draft Genome Sequences of 27 Salmonella enterica Serovar Schwarzengrund Isolates from Clinical Sources. PMID:30938709
Draft Whole-Genome Sequence of the Green Sulfur Photosynthetic Bacterium Chlorobaculum sp. Strain 24CR, Isolated from the Carmel River. PMID:30938700
Draft Genome Sequences of 10 Paenibacillus and Bacillus sp. Strains Isolated from Healthy Tomato Plants and Rhizosphere Soil. PMID:30938696
High-Quality Whole-Genome Sequence of an Estradiol-Degrading Strain, Novosphingobium tardaugens NBRC 16725. PMID:30938330
Draft Genome Sequence of Weissella viridescens UCO-SMC3, Isolated from the Slime of Helix aspersa Müller Snails. PMID:30938328
Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface. PMID:30938322
Identification of a lytic Pseudomonas aeruginosa phage depolymerase and its anti-biofilm effect and bactericidal contribution to serum. PMID:30937696
Prediction of Host-Specific Genes by Pan-Genome Analyses of the Korean Ralstonia solanacearum Species Complex. PMID:30930881
Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing Escherichia coli strains. PMID:30924410
Draft Genome Sequence of Bacillus lehensis M136, Isolated from the Manleluag Hyperalkaline Spring in Pangasinan, Philippines. PMID:30923238
Assessing the Pathogenicity of Two Bacteria Isolated from the Entomopathogenic Nematode Heterorhabditis indica against Galleria mellonella and Some Pest Insects. PMID:30917525
Staphylococcus saccharolyticus Isolated From Blood Cultures and Prosthetic Joint Infections Exhibits Excessive Genome Decay. PMID:30915059
Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns. PMID:30908517
Phylogenetic Diversity and Antimicrobial Resistance of Campylobacter coli from Humans and Animals in Japan. PMID:30905895
Genotoxic Escherichia coli Strains Encoding Colibactin, Cytolethal Distending Toxin, and Cytotoxic Necrotizing Factor in Laboratory Rats. PMID:30902120
Diazaquinomycin Biosynthetic Gene Clusters from Marine and Freshwater Actinomycetes. PMID:30896942
Whole Genome Analysis of Lactobacillus plantarum Strains Isolated From Kimchi and Determination of Probiotic Properties to Treat Mucosal Infections by Candida albicans and Gardnerella vaginalis. PMID:30894844
Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315. PMID:30894564
A genomic analysis of Mycobacterium immunogenum strain CD11_6 and its potential role in the activation of T cells against Mycobacterium tuberculosis. PMID:30894125
Sensitivity to the two peptide bacteriocin plantaricin EF is dependent on CorC, a membrane-bound, magnesium/cobalt efflux protein. PMID:30891921
The antibiotic resistance and pathogenicity of a multidrug-resistant Elizabethkingia anophelis isolate. PMID:30891912
Proteomic Analysis of Lactobacillus nagelii in the Presence of Saccharomyces cerevisiae Isolated From Water Kefir and Comparison With Lactobacillus hordei. PMID:30891008
Polyclonal symbiont populations in hydrothermal vent tubeworms and the environment. PMID:30887877
Adaptation of metal and antibiotic resistant traits in novel β-Proteobacterium Achromobacter xylosoxidans BHW-15. PMID:30886770
An automated Raman-based platform for the sorting of live cells by functional properties. PMID:30886359
Uncovering the potential of novel micromonosporae isolated from an extreme hyper-arid Atacama Desert soil. PMID:30886188
Antibacterial and anticancer activities of orphan biosynthetic gene clusters from Atlantis II Red Sea brine pool. PMID:30885206
Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae. PMID:30877285
Extended Spectrum Beta-Lactamase-Producing Gram-Negative Bacteria Recovered From an Amazonian Lake Near the City of Belém, Brazil. PMID:30873145
Extended insight into the Mycobacterium chelonae-abscessus complex through whole genome sequencing of Mycobacterium salmoniphilum outbreak and Mycobacterium salmoniphilum-like strains. PMID:30872669
Draft Genome Sequence of Agrobacterium deltaense Strain CNPSo 3391, Isolated from a Soybean Nodule in Mozambique. PMID:30863827
ICESsuHN105, a Novel Multiple Antibiotic Resistant ICE in Streptococcus suis Serotype 5 Strain HN105. PMID:30863372
Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production. PMID:30862945
Pathogenic potential of non-typhoidal Salmonella serovars isolated from aquatic environments in Mexico. PMID:30859492
Genomes of Neutrophilic Sulfur-Oxidizing Chemolithoautotrophs Representing 9 Proteobacterial Species From 8 Genera. PMID:30858836
Aztreonam plus Clavulanate, Tazobactam, or Avibactam for Treatment of Infections Caused by Metallo-β-Lactamase-Producing Gram-Negative Bacteria. PMID:30858212
Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction. PMID:30856245
Occurrence and characterization of quinolone resistant Escherichia coli from Norwegian turkey meat and complete sequence of an IncX1 plasmid encoding qnrS1. PMID:30856202
Metabolite-based mutualism enhances hydrogen production in a two-species microbial consortium. PMID:30854474
Complete genome sequencing of Lactobacillus plantarum CAUH2 reveals a novel plasmid pCAUH203 associated with oxidative stress tolerance. PMID:30854276
Uncovering the Mechanisms of Halotolerance in the Extremely Acidophilic Members of the Acidihalobacter Genus Through Comparative Genome Analysis. PMID:30853944
In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. PMID:30850614
The plasmid-borne quinolone resistance protein QnrB, a novel DnaA-binding protein, increases the bacterial mutation rate by triggering DNA replication stress. PMID:30838726
Colanic Acid Is a Novel Phage Receptor of Pectobacterium carotovorum subsp. carotovorum Phage POP72. PMID:30837957
CRISPR/CAS9 targeted CAPTURE of mammalian genomic regions for characterization by NGS. PMID:30837529
Draft Genome Sequences of Three Porcine Streptococcus suis Isolates Which Differ in Their Susceptibility to Penicillin. PMID:30834392
Draft Genome Sequence of a Marine Photoferrotrophic Bacterium, Rhodovulum robiginosum DSM 12329T. PMID:30834373
Genome Sequence Announcement of Lactobacillus vaginalis LMG S-26419, Isolated from a Healthy Woman. PMID:30834369
Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. PMID:30833729
Genomic analysis of Leptospira interrogans serovar Paidjan and Dadas isolates from carrier dogs and comparative genomic analysis to detect genes under positive selection. PMID:30832578
Comparative genomic analysis of enterotoxigenic Escherichia coli O159 strains isolated from diarrheal patients in Korea. PMID:30828387
Pseudomonas Diversity Within Urban Freshwaters. PMID:30828321
May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot Pectobacteriaceae: Pectobacterium spp. and Dickeya spp. PMID:30828320
Genome Sequencing and Annotation of Bacillus subtilis UBBS-14 to Ensure Probiotic Safety. PMID:30820257
Identification and Characterization of a Dominant Sulfolane-Degrading Rhodoferax sp. via Stable Isotope Probing Combined with Metagenomics. PMID:30816276
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia. PMID:30816235
Vgas: A Viral Genome Annotation System. PMID:30814982
Man-made microbial resistances in built environments. PMID:30814504
Genomic Analysis of Shewanella sp. O23S-The Natural Host of the pSheB Plasmid Carrying Genes for Arsenic Resistance and Dissimilatory Reduction. PMID:30813619
The Isolation and Characterization of Kronos, a Novel Caulobacter Rhizosphere Phage that is Similar to Lambdoid Phages. PMID:30810780
Genome analysis of Rubritalea profundi SAORIC-165T, the first deep-sea verrucomicrobial isolate, from the northwestern Pacific Ocean. PMID:30806980
Survival Mechanisms of Campylobacter hepaticus Identified by Genomic Analysis and Comparative Transcriptomic Analysis of in vivo and in vitro Derived Bacteria. PMID:30804905
Draft Genome Sequence of Heavy Metal-Resistant Bacillus cereus NWUAB01. PMID:30801070
Draft Genome Sequence of the UV-Resistant Antarctic Bacterium Sphingomonas sp. Strain UV9. PMID:30801068
Draft Genome Sequence of Vancomycin-Resistant Enterococcus faecium UEL170 (Sequence Type 412), Isolated from a Patient with Urinary Tract Infection in a Tertiary Hospital in Southern Brazil. PMID:30801059
Whole-Genome Sequencing of Two Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from India. PMID:30801057
Genome organisation and comparative genomics of four novel Wolbachia genome assemblies from Indian Drosophila host. PMID:30798391
Draft genome sequence of Enterococcus faecium SP15, a potential probiotic strain isolated from spring water. PMID:30795795
Genome sequence and characterization of the bcs clusters for the production of nanocellulose from the low pH resistant strain Komagataeibacter medellinensis ID13488. PMID:30793484
Data on the genome analysis of the probiotic strain Bacillus subtilis GM5. PMID:30793016
Phenotypic and molecular characterisations of carbapenem-resistant Acinetobacter baumannii strains isolated in Madagascar. PMID:30792853
Characterization of a Highly Virulent Edwardsiella anguillarum Strain Isolated From Greek Aquaculture, and a Spontaneously Induced Prophage Therein. PMID:30787917
Comparative Genomic Analyses Reveal Core-Genome-Wide Genes Under Positive Selection and Major Regulatory Hubs in Outlier Strains of Pseudomonas aeruginosa. PMID:30787911
Whole Genome Sequence Analysis of Burkholderia contaminans FFH2055 Strain Reveals the Presence of Putative β-Lactamases. PMID:30783798
Genomic Features, Comparative Genomics, and Antimicrobial Susceptibility Patterns of Elizabethkingia bruuniana. PMID:30783197
Phylogenomic Analyses of Bradyrhizobium Reveal Uneven Distribution of the Lateral and Subpolar Flagellar Systems, Which Extends to Rhizobiales. PMID:30781830
Genome Mining and Comparative Analysis of Streptococcus intermedius Causing Brain Abscess in a Child. PMID:30781742
Genome Analyses of a New Mycoplasma Species from the Scorpion Centruroides vittatus. PMID:30765418
Draft genome sequence data and analysis of Brachybacterium sp. strain EE-P12 isolated from a laboratory-scale anaerobic reactor. PMID:30761339
Draft genome sequence data of Lysinibacillus fusiformis strain GM, isolated from potato phyllosphere as a potential probiotic. PMID:30761330
Domestication of Local Microbial Consortia for Efficient Recovery of Gold Through Top-Down Selection in Airlift Bioreactors. PMID:30761108
Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria. PMID:30760820
Classification of the inoculant strain of cowpea UFLA03-84 and of other strains from soils of the Amazon region as Bradyrhizobium viridifuturi (symbiovar tropici). PMID:30759310
Draft Genome Sequence of the Putative Marine Pathogen Thalassobius sp. I31.1. PMID:30746516
Draft Genome Sequence of Enterococcus plantarum Strain TRW2, Isolated from Lettuce. PMID:30746515
Characterization of Hypermutator Pseudomonas aeruginosa Isolates from Patients with Cystic Fibrosis in Australia. PMID:30745381
Draft genome sequence data of Lactobacillus paracasei strain DTA83 isolated from infant stools. PMID:30740494
Genome sequencing and traits analysis of Burkholderia strains reveal a promising biocontrol effect against grey mould disease in grapevine (Vitis vinifera L.). PMID:30739227
Genome analysis of a thermophilic exopolysaccharide-producing bacterium - Geobacillus sp. WSUCF1. PMID:30733471
Extensive drug resistant Salmonella enterica serovar Senftenberg carrying blaNDM encoding plasmid p5558 (IncA/C) from India. PMID:30722761
2,3-Dihydroxybenzoate meta-Cleavage Pathway is Involved in o-Phthalate Utilization in Pseudomonas sp. strain PTH10. PMID:30718753
Bioinformatics research at BGRS-2018. PMID:30717672
In silico genome analysis reveals the metabolic versatility and biotechnology potential of a halotorelant phthalic acid esters degrading Gordonia alkanivorans strain YC-RL2. PMID:30715639
Whole-Genome Shotgun Sequencing and Characterization of Probiotic Strain Clostridium butyricum UBCB 70 To Assess Its Safety. PMID:30714044
Genome Analysis of Carbaryl-Degrading Strain Pseudomonas putida XWY-1. PMID:30710152
In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification. PMID:30709819
Lytic KFS-SE2 phage as a novel bio-receptor for Salmonella Enteritidis detection. PMID:30706346
Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256. PMID:30704413
Complete Genome Sequence of Microbacterium sp. Strain 10M-3C3, Isolated from an Extremely Phosphorus-Poor Lake. PMID:30701259
Draft Genome Sequences of Six Bacillus Strains and One Brevibacillus Strain Isolated from the Rhizosphere of Perennial Ryegrass (Lolium perenne). PMID:30701254
Complete Genome Sequences of Two Isolates of Fusobacterium necrophorum subsp. funduliforme, Obtained from Blood from Patients with Lemierre's Syndrome. PMID:30701252
Draft Genome Sequence of Staphylococcus sciuri Strain LCHXa, a Lithium-Tolerant Bacterium Isolated from Laguna Chaxa, Salar de Atacama, Chile. PMID:30701248
Complete Genome Sequence of Humibacter aquilariae BT305, Isolated from the Small Intestine of Castrated Beef Cattle. PMID:30701243
The flagellin of candidate live biotherapeutic Enterococcus gallinarum MRx0518 is a potent immunostimulant. PMID:30692549
Rational construction of genome-reduced and high-efficient industrial Streptomyces chassis based on multiple comparative genomic approaches. PMID:30691531
Motility, Biofilm Formation and Antimicrobial Efflux of Sessile and Planktonic Cells of Achromobacter xylosoxidans. PMID:30691200
The Characteristics and Genome Analysis of vB_AviM_AVP, the First Phage Infecting Aerococcus viridans. PMID:30691182
Draft Genome Sequence of Lactobacillus reuteri Strain LR CGMCC 11154, Isolated from the Feces of Healthy Weaned Piglets. PMID:30687840
Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces. PMID:30687834
Draft Genome Sequences of Eight Vibrio sp. Clinical Isolates from across the United States That Form a Basal Sister Clade to Vibrio cholerae. PMID:30687832
Complete Genome Sequences of Two Megasphaera elsdenii Strains, NCIMB 702410 and ATCC 25940. PMID:30687829
Draft Genome Sequence of Bacillus velezensis CE2, Which Genetically Encodes a Novel Multicomponent Lantibiotic. PMID:30687828
Draft Whole-Genome Sequence of a "Candidatus Liberibacter asiaticus" Strain from Yunnan, China. PMID:30687827
Complete Genome Sequence of Escherichia coli O157:H7 Phage PhiG17. PMID:30687820
Draft Genome Sequence of Bacillus coagulans ZB29, a Commercial Probiotic Strain. PMID:30687815
Quorum Sensing System of Ruegeria mobilis Rm01 Controls Lipase and Biofilm Formation. PMID:30687283
Host Specificity of the Dickeya Bacteriophage PP35 Is Directed by a Tail Spike Interaction With Bacterial O-Antigen, Enabling the Infection of Alternative Non-pathogenic Bacterial Host. PMID:30687274
"Candidatus Thermonerobacter thiotrophicus," A Non-phototrophic Member of the Bacteroidetes/Chlorobi With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities. PMID:30687241
A crash course in sequencing for a microbiologist. PMID:30684135
Molecular Characterization of Carbapenem Resistant Klebsiella pneumoniae and Klebsiella quasipneumoniae Isolated from Lebanon. PMID:30679463
Complete genome sequence of Caulobacter flavus RHGG3T, a type species of the genus Caulobacter with plant growth-promoting traits and heavy metal resistance. PMID:30675452
The Complete Genome and Physiological Analysis of the Eurythermal Firmicute Exiguobacterium chiriqhucha Strain RW2 Isolated From a Freshwater Microbialite, Widely Adaptable to Broad Thermal, pH, and Salinity Ranges. PMID:30671032
Genomic resources for the Neotropical tree genus Cedrela (Meliaceae) and its relatives. PMID:30658593
Aquella oligotrophica gen. nov. sp. nov.: A new member of the family Neisseriaceae isolated from laboratory tap water. PMID:30656855
Diversity and distribution of the bmp gene cluster and its Polybrominated products in the genus Pseudoalteromonas. PMID:30652406
Putative antibiotic resistance genes present in extant Bacillus licheniformis and Bacillus paralicheniformis strains are probably intrinsic and part of the ancient resistome. PMID:30645638
Draft Genome Sequence of Clostridium sp. Strain E02, Isolated from an Estuarine Environment. PMID:30643903
Draft Genome Sequences of Two Closely Related Marichromatium Isolates, Photosynthetic Gammaproteobacteria from Marine Ecosystems. PMID:30643899
Genome Sequence of Paracoccus sp. JM45, a Bacterial Strain Isolated from a Marine Sponge with a Dual Quorum Sensing Inhibition Activity. PMID:30643895
Whole-Genome Sequence of the Endophytic Streptomyces sp. Strain CBMAI 2042, Isolated from Citrus sinensis. PMID:30643884
Draft Genome Sequence of "Candidatus Sulcia muelleri" Strain KPTW1 from Kolla paulula, a Vector of Xylella fastidiosa Causing Pierce's Disease of Grapevine in Taiwan. PMID:30643878
Draft Genome Sequence of KCTC 12630, the Type Strain of the Novel Species Sphingomonas ginsengisoli. PMID:30643871
High-Quality Draft Genome Sequence of Pseudomonas aeruginosa 268 Isolated from a Patient with a Left Ventricular Assist Device. PMID:30637391
Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire. PMID:30637387
Draft Genome Sequence of the Cyanotroph Pseudomonas monteilii BCN3. PMID:30637384
Draft Genome Sequence of Halomonas elongata MH25661 Isolated from a Saline Creek in the Andes of Peru. PMID:30637380
Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates. PMID:30634913
Production of a Novel Tetrahydroxynaphthalene (THN) Derivative from Nocardia sp. CS682 by Metabolic Engineering and Its Bioactivities. PMID:30634706
Enterococcus faecalis Countermeasures Defeat a Virulent Picovirinae Bacteriophage. PMID:30634666
Co-culture of a Novel Fermentative Bacterium, Lucifera butyrica gen. nov. sp. nov., With the Sulfur Reducer Desulfurella amilsii for Enhanced Sulfidogenesis. PMID:30631314
Campylobacter coli From Retail Liver and Meat Products Is More Aerotolerant Than Campylobacter jejuni. PMID:30631306
Prophage induction, but not production of phage particles, is required for lethal disease in a microbiome-replete murine model of enterohemorrhagic E. coli infection. PMID:30629725
Genomic and biological characterization of the Vibrio alginolyticus-infecting "Podoviridae" bacteriophage, vB_ValP_IME271. PMID:30627984
Analysis of the complete genome sequence of a marine-derived strain Streptomyces sp. S063 CGMCC 14582 reveals its biosynthetic potential to produce novel anti-complement agents and peptides. PMID:30627488
Regional outbreak of community-associated methicillin-resistant Staphylococcus aureus ST834 in Japanese children. PMID:30626342
Proteogenomic Analysis of Epibacterium Mobile BBCC367, a Relevant Marine Bacterium Isolated From the South Pacific Ocean. PMID:30622520
The use of next generation sequencing for improving food safety: Translation into practice. PMID:30621881
Genome Sequencing and Pan-Genome Analysis of 23 Corallococcus spp. Strains Reveal Unexpected Diversity, With Particular Plasticity of Predatory Gene Sets. PMID:30619233
Antimicrobial Susceptibility and Genomic Structure of Arcobacter skirrowii Isolates. PMID:30619152
Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments. PMID:30619130
Characterization and Genomic Analysis of SFPH2, a Novel T7virus Infecting Shigella. PMID:30619123
Genome Sequences and Comparative Analysis of Two Extended-Spectrum Extensively-Drug Resistant Mycobacterium tuberculosis Strains. PMID:30618776
Interspecies DNA acquisition by a naturally competent Acinetobacter baumannii strain. PMID:30611868
Niche-directed evolution modulates genome architecture in freshwater Planctomycetes. PMID:30610231
The Ribosome as a Missing Link in Prebiotic Evolution III: Over-Representation of tRNA- and rRNA-Like Sequences and Plieofunctionality of Ribosome-Related Molecules Argues for the Evolution of Primitive Genomes from Ribosomal RNA Modules. PMID:30609737
Emergence of a Multidrug-Resistant Hypervirulent Klebsiella pneumoniae Sequence Type 23 Strain with a Rare bla CTX-M-24-Harboring Virulence Plasmid. PMID:30602516
Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. PMID:30585382
Niche Differentiation among Three Closely Related Competibacteraceae Clades at a Full-Scale Activated Sludge Wastewater Treatment Plant and Putative Linkages to Process Performance. PMID:30578268
Draft Genome Sequence of Lactococcus lactis subsp. lactis W8, a Potential Nisin-Producing Starter Culture for Indian Traditional Fermented Milk (Dahi). PMID:30574584
Genomic Study of a Clostridium difficile Multidrug Resistant Outbreak-Related Clone Reveals Novel Determinants of Resistance. PMID:30574133
Clonal Spread of Escherichia coli ST93 Carrying mcr-1-Harboring IncN1-IncHI2/ST3 Plasmid Among Companion Animals, China. PMID:30564223
Whole-genome of Mexican-crAssphage isolated from the human gut microbiome. PMID:30558657
Endogenous endophthalmitis caused by a multidrug-resistant hypervirulent Klebsiella pneumoniae strain belonging to a novel single locus variant of ST23: first case report in China. PMID:30558549
Genomic Insight Into the Predominance of Candidate Phylum Atribacteria JS1 Lineage in Marine Sediments. PMID:30555444
Population Genetics and Characterization of Campylobacter jejuni Isolates from Western Jackdaws and Game Birds in Finland. PMID:30552190
Clinical, immunological and bacteriological characteristics of H7N9 patients nosocomially co-infected by Acinetobacter Baumannii: a case control study. PMID:30551738
Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa. PMID:30547746
Enrichment and Genomic Characterization of a N2O-Reducing Chemolithoautotroph From a Deep-Sea Hydrothermal Vent. PMID:30547029
Comparative genome analysis of marine purple sulfur bacterium Marichromatium gracile YL28 reveals the diverse nitrogen cycle mechanisms and habitat-specific traits. PMID:30546119
Proteogenomic Analysis of Burkholderia Species Strains 25 and 46 Isolated from Uraniferous Soils Reveals Multiple Mechanisms to Cope with Uranium Stress. PMID:30545132
Genomic Analysis of Consecutive Acinetobacter baumannii Strains From a Single Patient. PMID:30542330
Cycad Coralloid Roots Contain Bacterial Communities Including Cyanobacteria and Caulobacter spp. That Encode Niche-Specific Biosynthetic Gene Clusters. PMID:30534962
Complete genome of Rhizobium leguminosarum Norway, an ineffective Lotus micro-symbiont. PMID:30534351
First Genome Sequence of Pasteurella multocida Type B Strain BAUTB2, a Major Pathogen Responsible for Mortality of Bovines in Bangladesh. PMID:30533939
Draft Genome Sequence of Mycoplasma wenyonii, a Second Hemotropic Mycoplasma Species Identified in Mexican Bovine Cattle. PMID:30533934
Draft Genome Sequences of Obligate Methylotrophs Methylovorus sp. Strain MM2 and Methylobacillus sp. Strain MM3, Isolated from Grassland Soil. PMID:30533926
Draft Genome Sequence and Brief History of Rhodovulum sp. Strain BSW8. PMID:30533907
Draft Genome Sequence of Enterobacter cloacae 3F11 (Phylum Proteobacteria). PMID:30533901
Draft Genome Sequence of Salinisphaera sp. Strain KSM-18, an Obligately Halophilic Bacterium Isolated from a Triassic Salt Mine. PMID:30533900
Draft Genome Sequences of Isolates from Sediments of the River Elbe That Are Highly Tolerant to Diclofenac. PMID:30533899
Genome Sequence of a Moderately Halophilic Bacillus cereus Strain, TS2, Isolated from Saltern Sediments. PMID:30533897
Complete Genome Sequence of Lytic Oenococcus oeni Bacteriophage OE33PA. PMID:30533896
Draft Genome Sequence of Deinococcus koreensis SJW1-2T, a Gamma Radiation-Resistant Bacterium Isolated from River Water. PMID:30533895
Draft Genome Sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, Novel Potential Probiotic Strains for Honeybees (Apis mellifera L.). PMID:30533893
Complete Genome Sequence of Acinetobacter radioresistens Strain LH6, a Multidrug-Resistant Bacteriophage-Propagating Strain. PMID:30533885
Draft Genome Sequences of Two Multidrug-Resistant Salmonella enterica Serovar Typhimurium Clinical Isolates from Uruguay. PMID:30533879
Draft Whole-Genome Sequence of the Purple Photosynthetic Bacterium Rhodopseudomonas palustris XCP. PMID:30533875
Draft Genome Sequence of Halomonas sp. CSM-2, a Moderately Halophilic Bacterium Isolated from a Triassic Salt Mine. PMID:30533871
Draft Genome Sequence of Bacillus cereus Strain UAEU-H3K6M1, a Bacterium with Potential Bioremediation Abilities, Isolated from Petroleum Sludge. PMID:30533869
Complete Genome Sequences of Erwinia amylovora Phages vB_EamP-S2 and vB_EamM-Bue1. PMID:30533868
Complete Genome Sequence of Enterobacter xiangfangensis Pb204, a South African Strain Capable of Synthesizing Gold Nanoparticles. PMID:30533853
Draft Genome Sequences of Nine Vibrio sp. Isolates from across the United States Closely Related to Vibrio cholerae. PMID:30533846
Complete Genome Sequence of Mycoplasma gallopavonis Type Strain WR1. PMID:30533837
Draft Genome Sequence of a Tetracycline-Resistant Plesiomonas shigelloides Strain Isolated from Aquaculture-Reared Tilapia. PMID:30533804
Draft Genome Sequence of Bacillus subtilis Strain FB6-3, Isolated from Fermented Bamboo Shoot. PMID:30533791
Draft Genome Sequence of Probiotic Lactobacillus brevis TUCO-5E, Isolated from Porcine Milk. PMID:30533786
Draft Genome Sequence of the Phenol-Degrading Bacterium Cupriavidus sp. Strain P-10, Isolated from Trichloroethene-Contaminated Aquifer Soil. PMID:30533775
Draft Genome Sequence of Pseudarthrobacter sp. Strain AG30, Isolated from a Gold and Copper Mine in China. PMID:30533765
Draft Genome Sequence of Anaplasma marginale Strain Mex-01-001-01, a Mexican Strain That Causes Bovine Anaplasmosis. PMID:30533750
Draft Genome Sequence of Enterobacter cloacae 3D9 (Phylum Proteobacteria). PMID:30533747
Draft Genome Sequence of Rhizobium sp. Strain T2.30D-1.1, Isolated from 538.5 Meters Deep on the Subsurface of the Iberian Pyrite Belt. PMID:30533741
Draft Genome Sequence of Citrobacter gillenii MBT-C3, Isolated from Lamb's Lettuce. PMID:30533725
Draft Whole-Genome Sequence of the Purple Nonsulfur Photosynthetic Bacterium Rhodopseudomonas rutila R1. PMID:30533724
Complete Genome Sequence of the Endophytic Bacterium Chryseobacterium indologenes PgBE177, Isolated from Panax quinquefolius. PMID:30533712
Complete Sequence and Annotation of the Mycoplasma phocidae Strain 105T Genome. PMID:30533705
Complete Genome Sequence of Salinisphaera sp. Strain LB1, a Moderately Halo-Acidophilic Bacterium Isolated from Lake Brown, Western Australia. PMID:30533691
Draft Genome Sequence of Burkholderia reimsis BE51, a Plant-Associated Bacterium Isolated from Agricultural Rhizosphere. PMID:30533687
Complete Genome Sequence of Ferriphaselus amnicola Strain OYT1, a Neutrophilic, Stalk-Forming, Iron-Oxidizing Bacterium. PMID:30533675
Draft Genome Sequence of Bacillus subtilis TLO3, Isolated from Olive Tree Rhizosphere Soil. PMID:30533650
Draft Genome Sequence of Achromobacter spanius Strain 6, a Soil Bacterium Isolated from a Hydrocarbon-Degrading Microcosm. PMID:30533632
Draft Genome Sequences of the 1,2-Dichloropropane-Respiring Dehalococcoides mccartyi Strains RC and KS. PMID:30533629
Whole-Genome Sequences of Two Arthrobacter sp. Strains, 4041 and 4042, Potentially Usable in Agriculture and Environmental Depollution. PMID:30533628
Whole-Genome Sequence of Pseudomonas sp. Strain 1239, Isolated from Soil in Western France. PMID:30533625
Draft Genome Sequences of the Nitrate-Dependent Iron-Oxidizing Proteobacteria Acidovorax sp. Strain BoFeN1 and Paracoccus pantotrophus Strain KS1. PMID:30533623
Whole-Genome Sequence of Pseudomonas aeruginosa Strain 4014, Isolated from Soil in France. PMID:30533620
Draft Genome Sequences of Nine Campylobacter hyointestinalis subsp. lawsonii Strains. PMID:30533618
Whole-Genome Sequence of Pseudomonas putida Strain 1312, a Potential Biostimulant Developed for Agriculture. PMID:30533614
Genome Sequence of Bacillus vallismortis TD3, a Salt-Tolerant Strain Isolated from the Sediments of a Solar Saltern in Tamil Nadu, India. PMID:30533605
Purification, Characterization and in vitro Evaluation of Polymyxin A From Paenibacillus dendritiformis: An Underexplored Member of the Polymyxin Family. PMID:30532748
Sucrose-Induced Proteomic Response and Carbohydrate Utilization of Lactobacillus sakei TMW 1.411 During Dextran Formation. PMID:30532743
GABA-modulating bacteria of the human gut microbiota. PMID:30531975
Role of phage ϕ1 in two strains of Salmonella Rissen, sensitive and resistant to phage ϕ1. PMID:30526475
Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains. PMID:30519380
Taxonomic and functional heterogeneity of the gill microbiome in a symbiotic coastal mangrove lucinid species. PMID:30518817
Insights Into Limnothrix sp. Metabolism Based on Comparative Genomics. PMID:30515147
Conjugative Transfer of a Novel Staphylococcal Plasmid Encoding the Biocide Resistance Gene, qacA. PMID:30510541
Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect. PMID:30509188
Complete genome sequence of Arcticibacterium luteifluviistationis SM1504T, a cytophagaceae bacterium isolated from Arctic surface seawater. PMID:30505389
High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples. PMID:30497396
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis. PMID:30487573
An Improved Genome-Scale Metabolic Model of Arthrospira platensis C1 (iAK888) and Its Application in Glycogen Overproduction. PMID:30486288
Tracking a serial killer: Integrating phylogenetic relationships, epidemiology, and geography for two invasive meningococcal disease outbreaks. PMID:30485280
Role of Temperate Bacteriophage ϕ20617 on Streptococcus thermophilus DSM 20617T Autolysis and Biology. PMID:30473689
Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains. PMID:30466389
Functional Analysis and Antivirulence Properties of a New Depolymerase from a Myovirus That Infects Acinetobacter baumannii Capsule K45. PMID:30463964
pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System. PMID:30460204
Virulent Epidemic Pneumonia in Sheep Caused by the Human Pathogen Acinetobacter baumannii. PMID:30459734
A Novel Alkaliphilic Streptomyces Inhibits ESKAPE Pathogens. PMID:30459722
Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants. PMID:30455841
Reconstructing the functions of endosymbiotic Mollicutes in fungus-growing ants. PMID:30454555
Hydrogen production by Sulfurospirillum species enables syntrophic interactions of Epsilonproteobacteria. PMID:30451902
Draft Genome Sequences of Proteus mirabilis K1609 and K670: A Model Strains for Territoriality Examination. PMID:30448962
Genome sequence analysis of an extensively drug-resistant Acinetobacter baumannii indigo-pigmented strain depicts evidence of increase genome plasticity. PMID:30446709
Octapeptin C4 and polymyxin resistance occur via distinct pathways in an epidemic XDR Klebsiella pneumoniae ST258 isolate. PMID:30445429
The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei. PMID:30427852
The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1. PMID:30426053
Whole-genome sequence data and analysis of type strains 'Pusillimonas nitritireducens' and 'Pusillimonas subterraneus' isolated from nitrate- and radionuclide-contaminated groundwater in Russia. PMID:30426040
Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient. PMID:30425690
Efficacy of Humanized Cefiderocol Exposures over 72 Hours against a Diverse Group of Gram-Negative Isolates in the Neutropenic Murine Thigh Infection Model. PMID:30420477
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs). PMID:30418481
Analysis of the Genome and Metabolome of Marine Myxobacteria Reveals High Potential for Biosynthesis of Novel Specialized Metabolites. PMID:30413766
Genome Features and Biochemical Characteristics of a Robust, Fast Growing and Naturally Transformable Cyanobacterium Synechococcus elongatus PCC 11801 Isolated from India. PMID:30413737
Characterization and Genomic Analyses of Pseudomonas aeruginosa Podovirus TC6: Establishment of Genus Pa11virus. PMID:30410478
Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen. PMID:30405564
Conjugative Transposons and Their Cargo Genes Vary across Natural Populations of Rickettsia buchneri Infecting the Tick Ixodes scapularis. PMID:30398619
Characterization of the First OXA-10 Natural Variant with Increased Carbapenemase Activity. PMID:30397053
Reviving Phage Therapy for the Treatment of Cholera. PMID:30395214
Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates. PMID:30383795
Evidence for diversifying selection of genetic regions of encoding putative collagen-like host-adhesive fibers in Pasteuria penetrans. PMID:30380051
Paenibacillus amylolyticus 27C64 has a diverse set of carbohydrate-active enzymes and complete pectin deconstruction system. PMID:30377865
Occurrence and significance of pathogenicity and fitness islands in environmental vibrios. PMID:30377851
The Complete Genome and Physiological Analysis of the Microbialite-Dwelling Agrococcus pavilionensis sp. nov; Reveals Genetic Promiscuity and Predicted Adaptations to Environmental Stress. PMID:30374333
Optimization of carbon and energy utilization through differential translational efficiency. PMID:30367068
ImproveAssembly - Tool for identifying new gene products and improving genome assembly. PMID:30365512
Comparative genomics of the Komagataeibacter strains-Efficient bionanocellulose producers. PMID:30365246
Draft genome sequence data of a tigecycline-resistant Enterobacter cloacae ST93 clinical strain isolated from bloodstream infection. PMID:30364805
Salicibibacter kimchii gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium in the family Bacillaceae, isolated from kimchi. PMID:30361979
Selecting lipopeptide-producing, Fusarium-suppressing Bacillus spp.: Metabolomic and genomic probing of Bacillus velezensis NWUMFkBS10.5. PMID:30358165
Molecular Characterization of Plasmids Harbored by Actinomycetes Isolated From the Great Salt Plains of Oklahoma Using PFGE and Next Generation Whole Genome Sequencing. PMID:30356833
Prophage-Driven Genomic Structural Changes Promote Bartonella Vertical Evolution. PMID:30346520
Whole-genome analysis and description of an outbreak due to carbapenem-resistant Ochrobactrum anthropi causing pseudo-bacteraemias. PMID:30345061
Draft genomes of "Pectobacterium peruviense" strains isolated from fresh water in France. PMID:30344890
Draft genome sequences of Cylindrospermopsis raciborskii strains CS-508 and MVCC14, isolated from freshwater bloom events in Australia and Uruguay. PMID:30344889
Insights into the draft genome sequence of bioactives-producing Bacillus thuringiensis DNG9 isolated from Algerian soil-oil slough. PMID:30344888
Comparative Genomics of Lactobacillus brevis Reveals a Significant Plasmidome Overlap of Brewery and Insect Isolates. PMID:30341451
In silico characterization of a novel putative aerotaxis chemosensory system in the myxobacterium, Corallococcus coralloides. PMID:30340510
Heteroresistance to the model antimicrobial peptide polymyxin B in the emerging Neisseria meningitidis lineage 11.2 urethritis clade: mutations in the pilMNOPQ operon. PMID:30338585
Draft genome sequences of 'Candidatus Chloroploca asiatica' and 'Candidatus Viridilinea mediisalina', candidate representatives of the Chloroflexales order: phylogenetic and taxonomic implications. PMID:30338027
First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico. PMID:30338024
Determination of virulence and fitness genes associated with the pheU, pheV and selC integration sites of LEE-negative food-borne Shiga toxin-producing Escherichia coli strains. PMID:30337962
Characterization and genome analysis of a butanol-isopropanol-producing Clostridium beijerinckii strain BGS1. PMID:30337959
Sulfur Respiration in a Group of Facultatively Anaerobic Natronoarchaea Ubiquitous in Hypersaline Soda Lakes. PMID:30333814
Genome-wide identification of geographical segregated genetic markers in Salmonella enterica serovar Typhimurium variant 4,[5],12:i: PMID:30323193
Identification and genome analysis of Deinococcus actinosclerus SJTR1, a novel 17β-estradiol degradation bacterium. PMID:30306002
Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus. PMID:30305867
BabA-mediated adherence of pediatric ulcerogenic H. pylori strains to gastric mucins at neutral and acidic pH. PMID:30298790
Cyclopropane-Containing Fatty Acids from the Marine Bacterium Labrenzia sp. 011 with Antimicrobial and GPR84 Activity. PMID:30297608
Hidden in plain sight-highly abundant and diverse planktonic freshwater Chloroflexi. PMID:30285851
Draft genome sequence of Staphylococcus sp. EZ-P03 isolated from a mesophilic anaerobic digester. PMID:30285843
In silico characterization of the global Geobacillus and Parageobacillus secretome. PMID:30285747
Molecular Epidemiology of Photobacterium damselae subsp. damselae Outbreaks in Marine Rainbow Trout Farms Reveals Extensive Horizontal Gene Transfer and High Genetic Diversity. PMID:30283411
Miniphocibacter massiliensis gen. nov., sp. nov., a new species isolated from the human gut and its taxono-genomics description. PMID:30280501
Complete genome sequence of Kocuria rhizophila BT304, isolated from the small intestine of castrated beef cattle. PMID:30275909
Acquisition of resistance to carbapenem and macrolide-mediated quorum sensing inhibition by Pseudomonas aeruginosa via ICETn4371 6385. PMID:30271939
Transcriptional and Functional Analysis of Bifidobacterium animalis subsp. lactis Exposure to Tetracycline. PMID:30266728
Genomics and Biochemistry of Metabolic Pathways for the C1 Compounds Utilization in Colorless Sulfur Bacterium Beggiatoa leptomitoformis D-402. PMID:30262951
Phylogenetic, comparative genomic and structural analyses of human Streptococcus agalactiae ST485 in China. PMID:30261834
Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community. PMID:30260956
Achieving Accurate Sequence and Annotation Data for Caulobacter vibrioides CB13. PMID:30259084
An Effective Pipeline Based on Relative Coverage for the Genome Assembly of Phytoplasmas and Other Fastidious Prokaryotes. PMID:30258279
The Cost of Metabolic Interactions in Symbioses between Insects and Bacteria with Reduced Genomes. PMID:30254121
Sialic Acid-Like Sugars in Archaea: Legionaminic Acid Biosynthesis in the Halophile Halorubrum sp. PV6. PMID:30245679
Spread of Carbapenem Resistance by Transposition and Conjugation Among Pseudomonas aeruginosa. PMID:30233535
Genome Sequencing and Analysis of Bacillus pumilus ICVB403 Isolated from Acartia tonsa Copepod Eggs Revealed Surfactin and Bacteriocin Production: Insights on Anti-Staphylococcus Activity. PMID:30229513
Draft genome sequence of Pantoea ananatis strain MHSD5 isolated from surface sterilized leaves of medicinal plant, Pellaea calomelanos obtained in South Africa. PMID:30229047
The first complete genomic structure of Butyrivibrio fibrisolvens and its chromid. PMID:30216146
Characterization of vB_Kpn_F48, a Newly Discovered Lytic Bacteriophage for Klebsiella pneumoniae of Sequence Type 101. PMID:30205588
Role of plasmid plasticity and mobile genetic elements in the entomopathogen Bacillus thuringiensis serovar israelensis. PMID:30203090
Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae. PMID:30202970
Advances in metabolic modeling of oleaginous microalgae. PMID:30202436
Conserved collateral antibiotic susceptibility networks in diverse clinical strains of Escherichia coli. PMID:30202004
Genome Analysis, Metabolic Potential, and Predatory Capabilities of Herpetosiphon llansteffanense sp. nov. PMID:30194103
Molecular characterization of Carbapenem resistant Escherichia coli recovered from a tertiary hospital in Lebanon. PMID:30188911
Pan-Genomic Study of Mycobacterium tuberculosis Reflecting the Primary/Secondary Genes, Generality/Individuality, and the Interconversion Through Copy Number Variations. PMID:30177918
Complete genome sequencing and analysis of endophytic Sphingomonas sp. LK11 and its potential in plant growth. PMID:30175026
Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic Propionibacterium freudenreichii CIRM-BIA 129. PMID:30174657
Evidence for Multidrug Resistance in Nonpathogenic Mycoplasma Species Isolated from South African Poultry. PMID:30171000
PirVP genes causing AHPND identified in a new Vibrio species (Vibrio punensis) within the commensal Orientalis clade. PMID:30166588
Shared Transcriptional Control and Disparate Gain and Loss of Aphid Parasitism Genes. PMID:30165560
Comparative Genomic Analysis of Vibrio diabolicus and Six Taxonomic Synonyms: A First Look at the Distribution and Diversity of the Expanded Species. PMID:30158916
Larger Than Life: Isolation and Genomic Characterization of a Jumbo Phage That Infects the Bacterial Plant Pathogen, Agrobacterium tumefaciens. PMID:30154772
Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex. PMID:30150974
Comparative Genomic Studies of Salmonella Heidelberg Isolated From Chicken- and Turkey-Associated Farm Environmental Samples. PMID:30147682
Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes. PMID:30134972
Comparative Transcriptomic Analysis of Streptococcus thermophilus TH1436 and TH1477 Showing Different Capability in the Use of Galactose. PMID:30131781
Dissemination of blaOXA-370 is mediated by IncX plasmids and the Tn6435 transposon. PMID:30128668
Metabolomics analysis of Pseudomonas chlororaphis JK12 algicidal activity under aerobic and micro-aerobic culture condition. PMID:30128639
Linking genotype and phenotype in an economically viable propionic acid biosynthesis process. PMID:30123322
Large plasmidome of dairy Lactococcus lactis subsp. lactis biovar diacetylactis FM03P encodes technological functions and appears highly unstable. PMID:30119641
Inter-Kingdom beach warfare: Microbial chemical communication activates natural chemical defences. PMID:30116041
Genetic diversity and phenotypic plasticity of AHL-mediated Quorum sensing in environmental strains of Vibrio mediterranei. PMID:30116040
Putative Iron Acquisition Systems in Stenotrophomonas maltophilia. PMID:30115820
Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans. PMID:30111868
Complete Genome of Micromonospora sp. Strain B006 Reveals Biosynthetic Potential of a Lake Michigan Actinomycete. PMID:30110167
Essential Gene Clusters Identified in Stenotrophomonas MB339 for Multiple Metal/Antibiotic Resistance and Xenobiotic Degradation. PMID:30109428
Kinetics of Targeted Phage Rescue in a Mouse Model of Systemic Escherichia coli K1. PMID:30105246
Extensive genomic diversity among Mycobacterium marinum strains revealed by whole genome sequencing. PMID:30104693
Extrachromosomal circular elements targeted by CRISPR-Cas in Dehalococcoides mccartyi are linked to mobilization of reductive dehalogenase genes. PMID:30104577
An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae. PMID:30101693
Tracing back multidrug-resistant bacteria in fresh herb production: from chive to source through the irrigation water chain. PMID:30101286
Characterization of candidate genes involved in halotolerance using high-throughput omics in the halotolerant bacterium Virgibacillus chiguensis. PMID:30091990
Genomics helps to decipher the resistance mechanisms present in a Pseudomonas chlororaphis strain recovered in an HIV patient. PMID:30090632
Genome Sequence and Antifungal Activity of Two Niche-Sharing Pseudomonas protegens Related Strains Isolated from Hydroponics. PMID:30088023
Comparative Genome Analysis of 2 Mycobacterium Tuberculosis Strains from Pakistan: Insights Globally Into Drug Resistance, Virulence, and Niche Adaptation. PMID:30083049
Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol. PMID:30081857
Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7. PMID:30081830
Gut microbiota dysbiosis is associated with malnutrition and reduced plasma amino acid levels: Lessons from genome-scale metabolic modeling. PMID:30075203
Diversity and Evolution of Myxobacterial Type IV Pilus Systems. PMID:30072980
Genomic Diversity of Listeria monocytogenes Isolated from Clinical and Non-Clinical Samples in Chile. PMID:30072604
Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae. PMID:30071618
Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size. PMID:30068938
Virulence-related comparative transcriptomics of infectious and non-infectious chlamydial particles. PMID:30068313
The Identification of DepB: An Enzyme Responsible for the Final Detoxification Step in the Deoxynivalenol Epimerization Pathway in Devosia mutans 17-2-E-8. PMID:30065709
The Endophytic Strain Klebsiella michiganensis Kd70 Lacks Pathogenic Island-Like Regions in Its Genome and Is Incapable of Infecting the Urinary Tract in Mice. PMID:30061870
Increased biofilm formation due to high-temperature adaptation in marine Roseobacter. PMID:30061756
Spread of MCR-3 Colistin Resistance in China: An Epidemiological, Genomic and Mechanistic Study. PMID:30061009
Community dynamics and functional characteristics of naphthalene-degrading populations in contaminated surface sediments and hypoxic/anoxic groundwater. PMID:30051558
Bacterial Production of Indole Related Compounds Reveals Their Role in Association Between Duckweeds and Endophytes. PMID:30050896
Low-Level Antimicrobials in the Medicinal Leech Select for Resistant Pathogens That Spread to Patients. PMID:30042201
Comparative Genomics of Escherichia coli Sequence Type 219 Clones From the Same Patient: Evolution of the IncI1 blaCMY-Carrying Plasmid in Vivo. PMID:30038606
Lateral Gene Transfer Between Protozoa-Related Giant Viruses of Family Mimiviridae and Chlamydiae. PMID:30038484
Genome-Scale Metabolic Model of Actinosynnema pretiosum ATCC 31280 and Its Application for Ansamitocin P-3 Production Improvement. PMID:30036981
Potential Survival and Pathogenesis of a Novel Strain, Vibrio parahaemolyticus FORC_022, Isolated From a Soy Sauce Marinated Crab by Genome and Transcriptome Analyses. PMID:30034383
The draft genomes of Elizabethkingia anophelis of equine origin are genetically similar to three isolates from human clinical specimens. PMID:30024943
Comparative Genomic Analysis of 130 Bacteriophages Infecting Bacteria in the Genus Pseudomonas. PMID:30022972
Evolution and Comparative Genomics of F33:A-:B- Plasmids Carrying blaCTX-M-55 or blaCTX-M-65 in Escherichia coli and Klebsiella pneumoniae Isolated from Animals, Food Products, and Humans in China. PMID:30021873
An Approach to In Silico Dissection of Bacterial Intelligence Through Selective Genomic Tools. PMID:30013271
Microscale ecology regulates particulate organic matter turnover in model marine microbial communities. PMID:30013041
Genome-Guided Characterization of Ochrobactrum sp. POC9 Enhancing Sewage Sludge Utilization-Biotechnological Potential and Biosafety Considerations. PMID:30013002
Molecular Insights into Antimicrobial Resistance Traits of Commensal Human Gut Microbiota. PMID:30009332
Multidrug-resistant Citrobacter freundii ST139 co-producing NDM-1 and CMY-152 from China. PMID:30006537
Comparative genomic analysis of Enterococcus faecalis: insights into their environmental adaptations. PMID:29996769
Noncontiguous finished genome sequences and descriptions of Actinomyces ihuae, Actinomyces bouchesdurhonensis, Actinomyces urinae, Actinomyces marseillensis, Actinomyces mediterranea and Actinomyces oralis sp. nov. identified by culturomics. PMID:29992027
Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium Pandoraea sp. ISTKB. PMID:29991962
Genome analysis of new Blattabacterium spp., obligatory endosymbionts of Periplaneta fuliginosa and P. japonica. PMID:29990378
Whole genome sequencing and identification of Bacillus endophyticus and B. anthracis isolated from anthrax outbreaks in South Africa. PMID:29986655
Cloning and characterization of short-chain N-acyl homoserine lactone-producing Enterobacter asburiae strain L1 from lettuce leaves. PMID:29982994
Anaerococcus jeddahensis sp. nov., a New Bacterial Species Isolated From Healthy Nomadic Bedouin Woman From Saudi Arabia. PMID:29982935
Comparative Genomics of Nonoutbreak Pseudomonas aeruginosa Strains Underlines Genome Plasticity and Geographic Relatedness of the Global Clone ST235. PMID:29982603
Enhanced bacterial mutualism through an evolved biofilm phenotype. PMID:29977009
FusoPortal: an Interactive Repository of Hybrid MinION-Sequenced Fusobacterium Genomes Improves Gene Identification and Characterization. PMID:29976644
Genome Sequence of Bacillus velezensis SGAir0473, Isolated from Tropical Air Collected in Singapore. PMID:29976613
Complete Genome Sequence of the Bacterium Serratia marcescens SGAir0764, Isolated from Singapore Air. PMID:29976612
Genome Sequence of Geobacillus thermoleovorans SGAir0734, Isolated from Singapore Air. PMID:29976611
Draft Genome Sequence of Bioactive Strain Streptomyces sp. SMS_SU21, Isolated from Soil Sediment of the Sundarbans Mangrove Ecosystem. PMID:29976609
Genome Sequences of Listeria Phages Induced from Lysogenic Isolates of Listeria monocytogenes from Seafood and a Seafood Processing Environment in Thailand. PMID:29976605
Draft Genome Sequence of Pectobacterium atrosepticum PB72 and Complete Genome Sequence of the Specific Bacteriophage PP90. PMID:29976602
Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System. PMID:29973550
Prevalence and Genetic Analysis of mcr-3-Positive Aeromonas Species from Humans, Retail Meat, and Environmental Water Samples. PMID:29967026
Whole genome sequencing reveals widespread distribution of typhoidal toxin genes and VirB/D4 plasmids in bovine-associated nontyphoidal Salmonella. PMID:29959369
Galacturonate Metabolism in Anaerobic Chemostat Enrichment Cultures: Combined Fermentation and Acetogenesis by the Dominant sp. nov. "Candidatus Galacturonibacter soehngenii". PMID:29959255
Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages. PMID:29954900
Draft Genome Sequence of Mycoplasma arginini Strain NGR_2017. PMID:29954897
Complete Genome Sequence of the Novel Virulent Phage PMBT28 with Lytic Activity against Thermotolerant Salmonella enterica subsp. enterica Serovar Senftenberg ATCC 43845. PMID:29954894
Complete Genome Sequence of Acinetobacter schindleri SGAir0122 Isolated from Singapore Air. PMID:29954893
Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain WG49 and Escherichia coli Strain WG5 Used in South Africa for Phage Detection in Water Samples. PMID:29954884
Characterization and genomic analysis of highly efficient thermotolerant oil-degrading bacterium Gordonia sp. 1D. PMID:29951843
Molecular Epidemiology of mcr-Encoded Colistin Resistance in Enterobacteriaceae From Food-Producing Animals in Italy Revealed Through the EU Harmonized Antimicrobial Resistance Monitoring. PMID:29951045
Description and Comparative Genomics of Macrococcus caseolyticus subsp. hominis subsp. nov., Macrococcus goetzii sp. nov., Macrococcus epidermidis sp. nov., and Macrococcus bohemicus sp. nov., Novel Macrococci From Human Clinical Material With Virulence Potential and Suspected Uptake of Foreign DNA by Natural Transformation. PMID:29951040
The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata. PMID:29948018
Whole genome sequence of Mycobacterium kansasii isolates of the genotype 1 from Brazilian patients with pulmonary disease demonstrates considerable heterogeneity. PMID:29947722
Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes. PMID:29942087
Comparative Genomics Provides Insights Into the Marine Adaptation in Sponge-Derived Kocuriaflava S43. PMID:29937765
Characterization of the pathogenicity of strains of Pseudomonas syringae towards cherry and plum. PMID:29937581
Comparative Genomics Reveals Evidence of Genome Reduction and High Extracellular Protein Degradation Potential in Kangiella. PMID:29930545
Draft Genome Sequence of a Divergent Anaerobic Member of the Chloroflexi Class Ardenticatenia from a Sulfidic Hot Spring. PMID:29930071
Draft Genome Sequences of Two Basal Members of the Anaerolineae Class of Chloroflexi from a Sulfidic Hot Spring. PMID:29930070
High-Quality Draft Single-Cell Genome Sequence of the NS5 Marine Group from the Coastal Red Sea. PMID:29930069
Draft Genome Sequence of Bifidobacterium longum UMA026, Isolated from Holstein Dairy Cow Feces. PMID:29930064
Draft Genome Sequence of a Dissimilatory U(VI)-Reducing Bacterium, Shewanella xiamenensis Strain DCB2-1, Isolated from Nitrate- and Radionuclide-Contaminated Groundwater in Russia. PMID:29930062
Draft Whole-Genome Sequence of "Candidatus Liberibacter asiaticus" Strain TX1712 from Citrus in Texas. PMID:29930061
Draft Genome Sequence of Serratia sp. Strain S1B, Isolated from Mercury-Contaminated Soil. PMID:29930048
Complete Genome Sequence of Bacillus subtilis Strain DKU_NT_03, Isolated from a Traditional Korean Food Using Soybean (Chung-gook-jang) for High-Quality Nattokinase Activity. PMID:29930044
Complete Genome Sequence of Bacillus subtilis Strain DKU_NT_02, Isolated from Traditional Korean Food Using Soybean (Chung-gook-jang) for High-Quality Poly-γ-Glutamic Acid Activity. PMID:29930043
Sequencing and Annotation of the Genome of Mycobacterium tuberculosis MYC004, a Strain Causing Meningitis in Mexico. PMID:29930042
Draft Genome Sequence of Pseudomonas sp. Strain B1, Isolated from a Contaminated Sediment. PMID:29930041
Complete Genome Sequence of Bacillus subtilis Strain MH1, Which Has a High Level of Bacteriocin-Like Activity, Isolated from Soil in Bangladesh. PMID:29930040
Molecular characterization of KPC-2-positive Klebsiella pneumoniae isolates from a neurosurgical centre in Argentina. PMID:29922473
Genome sequence and description of Clostridium niameyense sp. nov., isolated from a human with marasmus in Nigeria. PMID:29922472
A Novel mcr-1 Variant Carried by an IncI2-Type Plasmid Identified From a Multidrug Resistant Enterotoxigenic Escherichia coli. PMID:29922243
Comparative Genomics of the Herbivore Gut Symbiont Lactobacillus reuteri Reveals Genetic Diversity and Lifestyle Adaptation. PMID:29915568
Genome Rearrangement Shapes Prochlorococcus Ecological Adaptation. PMID:29915114
The comparative genomics of Bifidobacterium callitrichos reflects dietary carbohydrate utilization within the common marmoset gut. PMID:29906260
Draft Genome Sequences of Cloacibacterium normanense IMET F, a Microalgal Growth-Promoting Bacterium, and Aeromonas jandaei IMET J, a Microalgal Growth-Inhibiting Bacterium. PMID:29903817
Draft Genome Sequence of Lactococcus sp. Strain NtB2 (JCM 32569), Isolated from the Gut of the Higher Termite Nasutitermes takasagoensis. PMID:29903810
Complete genome sequence of uropathogenic Escherichia coli isolate UPEC 26-1. PMID:29892948
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes. PMID:29891866
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa. PMID:29890970
Blazing Signature Filter: a library for fast pairwise similarity comparisons. PMID:29890950
Whole genome sequence and comparative analysis of Borrelia burgdorferi MM1. PMID:29889842
Detecting viral genomes in the female urinary microbiome. PMID:29889019
Genomic Insights into Nematicidal Activity of a Bacterial Endophyte, Raoultella ornithinolytica MG against Pine Wilt Nematode. PMID:29887781
From the High Arctic to the Equator: Do Soil Metagenomes Differ According to Our Expectations? PMID:29882154
Characterization of a novel multidrug resistance plasmid pSGB23 isolated from Salmonella enterica subspecies enterica serovar Saintpaul. PMID:29881467
Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa. PMID:29880909
Genome Sequence of Lactobacillus plantarum JMCC0013, Isolated from Traditional Chinese Fermented Milk. PMID:29880588
Using genome-scale metabolic models to compare serovars of the foodborne pathogen Listeria monocytogenes. PMID:29879172
Arginine Catabolic Mobile Elements in Livestock-Associated Methicillin-Resistant Staphylococcal Isolates From Bovine Mastitic Milk in China. PMID:29867908
Distribution and Genetic Characteristics of SXT/R391 Integrative Conjugative Elements in Shewanella spp. From China. PMID:29867831
Discovery of Phloeophagus Beetles as a Source of Pseudomonas Strains That Produce Potentially New Bioactive Substances and Description of Pseudomonas bohemica sp. nov. PMID:29867824
Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS. PMID:29864113
Cloning and Expression of the Organophosphate Pesticide-Degrading α-β Hydrolase Gene in Plasmid pMK-07 to Confer Cross-Resistance to Antibiotics. PMID:29862253
Comparative genomic analysis of a naturally competent Elizabethkingia anophelis isolated from an eye infection. PMID:29855598
Draft Genome Sequence of the Novel Enterobacter cloacae Strain amazonensis, a Highly Heavy Metal-Resistant Bacterium from a Contaminated Stream in Amazonas, Brazil. PMID:29853502
Complete Genome Sequence of Pseudomonas stutzeri Type Strain SGAir0442, Isolated from Singapore Air Samples. PMID:29853498
Complete Genome Sequences of Two Escherichia Phages Isolated from Wastewater in Finland. PMID:29853497
Complete Genomic Sequence of Pseudoalteromonas sp. Strain SAO4-4, a Protease-Producing Bacterium Isolated from Seawater of the Atlantic Ocean. PMID:29853496
Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics. PMID:29850960
Whole-Genome Sequencing and Comparative Genome Analysis Provided Insight into the Predatory Features and Genetic Diversity of Two Bdellovibrio Species Isolated from Soil. PMID:29850478
Complete Genome Sequencing of the Mouse Intestinal Isolate Escherichia coli Mt1B1. PMID:29798919
Complete Genome Sequences of Two Salmonella Viruses, VSe11 and VSe102 (Family Myoviridae, Subfamily Ounavirinae), with a Very High Degree of Similarity. PMID:29798917
Draft Genome Sequence of Bacillus velezensis PEBA20, a Strain with a Plant Growth-Promoting Effect and Biocontrol Potential. PMID:29798912
Draft Genome Sequence of Rhizobium sophoriradicis H4, a Nitrogen-Fixing Bacterium Associated with the Leguminous Plant Phaseolus vulgaris on the Coast of Peru. PMID:29798911
Draft Genome Sequence of the Feruloyl Esterase-Producing Strain Lactobacillus fermentum CRL1446, a Probiotic for Malnutrition. PMID:29798910
Daily rhythmicity in coastal microbial mats. PMID:29796291
Genomic and ecological study of two distinctive freshwater bacteriophages infecting a Comamonadaceae bacterium. PMID:29789681
Isolation and characterization of Bacillus sp. GFP-2, a novel Bacillus strain with antimicrobial activities, from Whitespotted bamboo shark intestine. PMID:29785529
Molecular Analysis of a blaIMP-1-Harboring Class 3 Integron in Multidrug-Resistant Pseudomonas fulva. PMID:29784850
The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress. PMID:29782030
Establishing an innovative carbohydrate metabolic pathway for efficient production of 2-keto-L-gulonic acid in Ketogulonicigenium robustum initiated by intronic promoters. PMID:29778095
A Novel Enzyme Portfolio for Red Algal Polysaccharide Degradation in the Marine Bacterium Paraglaciecola hydrolytica S66T Encoded in a Sizeable Polysaccharide Utilization Locus. PMID:29774012
Complete Genome Sequence of Oyster Isolate Vibrio vulnificus Env1. PMID:29773632
Draft Genome Sequences of Azospirillum brasilense Strains Ab-V5 and Ab-V6, Commercially Used in Inoculants for Grasses and Legumes in Brazil. PMID:29773623
Mutant phenotypes for thousands of bacterial genes of unknown function. PMID:29769716
An epizootic of Chlamydia psittaci equine reproductive loss associated with suspected spillover from native Australian parrots. PMID:29765033
Short genome report of cellulose-producing commensal Escherichia coli 1094. PMID:29760866
A Polyphasic and Taxogenomic Evaluation Uncovers Arcobacter cryaerophilus as a Species Complex That Embraces Four Genomovars. PMID:29755434
Clostridium perfringens Virulent Bacteriophage CPS2 and Its Thermostable Endolysin LysCPS2. PMID:29751651
A Genomic and Proteomic Approach to Identify and Quantify the Expressed Bacillus thuringiensis Proteins in the Supernatant and Parasporal Crystal. PMID:29748494
High-Quality Draft Single-Cell Genome Sequence Belonging to the Archaeal Candidate Division SA1, Isolated from Nereus Deep in the Red Sea. PMID:29748404
Complete Genome Sequence of Staphylococcus haemolyticus Type Strain SGAir0252. PMID:29748397
Microbial Diversity and Toxin Risk in Tropical Freshwater Reservoirs of Cape Verde. PMID:29734762
Complete Nucleotide Sequence Analysis of a Novel Bacillus subtilis-Infecting Bacteriophage BSP10 and Its Effect on Poly-Gamma-Glutamic Acid Degradation. PMID:29734701
Insight into Energy Conservation via Alternative Carbon Monoxide Metabolism in Carboxydothermus pertinax Revealed by Comparative Genome Analysis. PMID:29728389
Complete Genome Sequence of Acinetobacter indicus Type Strain SGAir0564 Isolated from Tropical Air Collected in Singapore. PMID:29724855
Draft Genome Sequence of Mercury-Resistant Pseudomonas putida Strain DRA525. PMID:29724843
Draft Genome Sequence of Loktanella maritima Strain YPC211, a Commensal Bacterium of the American Lobster (Homarus americanus). PMID:29724832
Draft Genome Sequence of Bacillus pumilus SCAL1, an Endophytic Heat-Tolerant Plant Growth-Promoting Bacterium. PMID:29724830
Complete Genome Sequence of Lelliottia nimipressuralis Type Strain SGAir0187, Isolated from Tropical Air Collected in Singapore. PMID:29724826
Enterococcus faecalis AHG0090 is a Genetically Tractable Bacterium and Produces a Secreted Peptidic Bioactive that Suppresses Nuclear Factor Kappa B Activation in Human Gut Epithelial Cells. PMID:29720977
Identification and pathogenomic analysis of an Escherichia coli strain producing a novel Shiga toxin 2 subtype. PMID:29712985
Strain-level genetic diversity of Methylophaga nitratireducenticrescens confers plasticity to denitrification capacity in a methylotrophic marine denitrifying biofilm. PMID:29707436
Peptoniphilus lacydonensis sp. nov., a new human-associated species isolated from a patient with chronic refractory sinusitis. PMID:29707211
tuf Gene Sequence Variation in Bifidobacterium longum subsp. infantis Detected in the Fecal Microbiota of Chinese Infants. PMID:29703739
Draft Genome Sequence of the Putative Marine Pathogen Aquimarina sp. Strain I32.4. PMID:29700150
Draft Genome Sequence of Plant Growth-Promoting Burkholderia sp. Strain BE12, Isolated from the Rhizosphere of Maize. PMID:29700147
Draft Genome Sequence of the Extremely Desiccation-Tolerant Cyanobacterium Gloeocapsopsis sp. Strain AAB1. PMID:29700137
Draft Genome Sequence of Multidrug-Resistant Escherichia coli NIVEDI-P44, Isolated from a Chicken Fecal Sample in Northeast India. PMID:29700135
Draft Genome Sequence of Paucibacter aquatile CR182T, a Strain with Antimicrobial Activity Isolated from Freshwater of Nakdong River in South Korea. PMID:29700134
Complete Genome Sequences of Two Novel Staphylococcus aureus Podoviruses of Potential Therapeutic Use, vB_SauP_phiAGO1.3 and vB_SauP_phiAGO1.9. PMID:29700131
Genomic characterization of Nitrospirillum amazonense strain CBAmC, a nitrogen-fixing bacterium isolated from surface-sterilized sugarcane stems. PMID:29696375
Elucidation of the anti-hyperammonemic mechanism of Lactobacillus amylovorus JBD401 by comparative genomic analysis. PMID:29695242
Genome-Wide Comparison Reveals a Probiotic Strain Lactococcus Lactis WFLU12 Isolated from the Gastrointestinal Tract of Olive Flounder (Paralichthys Olivaceus) Harboring Genes Supporting Probiotic Action. PMID:29695124
Genome sequence and description of Paenibacillus ihuae strain GD6 sp. nov., isolated from the stool of a 62-year-old Frenchman. PMID:29692909
Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades. PMID:29688542
Whole-Genome Analysis of an Extensively Drug-Resistance Empedobacter falsenii Strain Reveals Distinct Features and the Presence of a Novel Metallo-ß-Lactamase (EBR-2). PMID:29687150
Multi-faceted immunomodulatory and tissue-tropic clinical bacterial isolate potentiates prostate cancer immunotherapy. PMID:29686284
Draft genome sequence of Bosea sp. WAO an arsenite and sulfide oxidizer isolated from a pyrite rock outcrop in New Jersey. PMID:29682167
Investigating the Central Metabolism of Clostridium thermosuccinogenes. PMID:29678919
Draft Genome Sequence of Pseudomonas sp. Strain LLC-1 (NBRC 111237), Capable of Metabolizing Lignin-Derived Low-Molecular-Weight Compounds. PMID:29674554
Draft Genome Sequence of Burkholderia gladioli Coa14, a Bacterium with Petroleum Bioremediation Potential Isolated from Coari Lake, Amazonas, Brazil. PMID:29674552
Draft Genome Sequence of a Shewanella halifaxensis Strain Isolated from the Intestine of Marine Red Seabream (Pagrus major), Which Includes an Integrative Conjugative Element with Macrolide Resistance Genes. PMID:29674550
Draft Genome Sequences of Pseudomonas sp. Strain 382 and Pantoea coffeiphila 342, Endophytic Bacteria Isolated from Brazilian Guarana [Paullinia cupana (Mart.) Ducke]. PMID:29674547
Identification of two different chemosensory pathways in representatives of the genus Halomonas. PMID:29669514
Inferring the Minimal Genome of Mesoplasma florum by Comparative Genomics and Transposon Mutagenesis. PMID:29657968
Stress-Adaptive Responses Associated with High-Level Carbapenem Resistance in KPC-Producing Klebsiella pneumoniae. PMID:29657865
Noncontiguous finished genome sequence and description of Intestinimonas massiliensis sp. nov strain GD2T , the second Intestinimonas species cultured from the human gut. PMID:29654664
The Potential of Isolation Source to Predict Colonization in Avian Hosts: A Case Study in Campylobacter jejuni Strains From Three Bird Species. PMID:29651281
A new way of producing pediocin in Pediococcus acidilactici through intracellular stimulation by internalized inulin nanoparticles. PMID:29650991
Draft Genome Sequence of the Mercury-Resistant Strain Acinetobacter baumannii I43. PMID:29650581
Whole-Genome Sequences of Cronobacter sakazakii Isolates Obtained from Foods of Plant Origin and Dried-Food Manufacturing Environments. PMID:29650569
Characterizing Phage Genomes for Therapeutic Applications. PMID:29642590
Characterization of a New Staphylococcus aureus Kayvirus Harboring a Lysin Active against Biofilms. PMID:29642449
Genomic analysis of oral Campylobacter concisus strains identified a potential bacterial molecular marker associated with active Crohn's disease. PMID:29636463
Genome Sequence of the Proteorhodopsin-Containing Bacterium Flavobacterium sp. Strain TH167, Isolated from Cyanobacterial Aggregates in a Eutrophic Lake. PMID:29622615
Draft Genome Sequence of Bowmanella denitrificans JL63, a Bacterium Isolated from Whiteleg Shrimp (Litopenaeus vannamei) That Can Inhibit the Growth of Vibrio parahaemolyticus. PMID:29622614
Draft Genome Sequences of Salmonella enterica Serovar Enteritidis and Kentucky Isolates from Retail Poultry Sources. PMID:29622609
In silico characterization of a cyanobacterial plant-type isoaspartyl aminopeptidase/asparaginase. PMID:29619654
Genome sequence and comparative analysis of Bacillus cereus BC04, reveals genetic diversity and alterations for antimicrobial resistance. PMID:29619642
Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa. PMID:29617986
Rapid Identification of Intact Staphylococcal Bacteriophages Using Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry. PMID:29617332
PCR-Based Analysis of ColE1 Plasmids in Clinical Isolates and Metagenomic Samples Reveals Their Importance as Gene Capture Platforms. PMID:29615998
Genomic Characterization of Sixteen Yersinia enterocolitica-Infecting Podoviruses of Pig Origin. PMID:29614052
Metatranscriptomics analysis of mangroves habitats around Mauritius. PMID:29611003
Comparative genome analysis of 24 bovine-associated Staphylococcus isolates with special focus on the putative virulence genes. PMID:29610707
Molecular basis for the structural diversity in serogroup O2-antigen polysaccharides in Klebsiella pneumoniae. PMID:29602878
Analyzing AbrB-Knockout Effects through Genome and Transcriptome Sequencing of Bacillus licheniformis DW2. PMID:29599755
Draft Genome Sequence of Bacillus paralicheniformis F47, Isolated from an Algerian Salty Lake. PMID:29599156
Draft Genome Sequences of Two Novel Salmonella enterica subsp. enterica Strains Isolated from Low-Moisture Foods with Applications in Food Safety Research. PMID:29599154
Revisiting Francisella tularensis subsp. holarctica, Causative Agent of Tularemia in Germany With Bioinformatics: New Insights in Genome Structure, DNA Methylation and Comparative Phylogenetic Analysis. PMID:29593661
Genetic Relationships among Multidrug-Resistant Salmonella enterica Serovar Typhimurium Strains from Humans and Animals. PMID:29581119
Molecular Characterization of OXA-198 Carbapenemase-Producing Pseudomonas aeruginosa Clinical Isolates. PMID:29581118
Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids. PMID:29580380
Genome-Scale, Constraint-Based Modeling of Nitrogen Oxide Fluxes during Coculture of Nitrosomonas europaea and Nitrobacter winogradskyi. PMID:29577088
Complete Genome Sequence of Microcystis aeruginosa NIES-2481 and Common Genomic Features of Group G M. aeruginosa. PMID:29576807
Genomic Analysis of Propane Metabolism in Methyl Tert-Butyl Ether-Degrading Mycobacterium Sp. Strain ENV421. PMID:29576806
Comparative genomic analysis of Lactobacillus plantarum GB-LP4 and identification of evolutionarily divergent genes in high-osmolarity environment. PMID:29568414
Draft Genome Sequence of Multidrug-Resistant Stenotrophomonas pavanii BWK1, Isolated from Mareca penelope Feces. PMID:29567744
Draft Genome Sequence of Carbapenem-Resistant Pseudomonas fluorescens Strain BWKM6, Isolated from Feces of Mareca penelope. PMID:29567743
Complete Genome Sequence of the Live Attenuated Vaccine Strain Brucella melitensis Rev.1. PMID:29567740
Genome Sequences of 15 Klebsiella sp. Isolates from Sugarcane Fields in Colombia's Cauca Valley. PMID:29567732
Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution. PMID:29559574
Dual infections of two carbapenemase-producing Acinetobacter baumannii clinical strains isolated from the same blood culture sample of a patient in Iran. PMID:29556378
Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples. PMID:29556252
Plasmid-Mediated Quinolone Resistance in Shigella flexneri Isolated From Macaques. PMID:29556221
Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection. PMID:29547094
Genetic Analysis of Virulence Potential of Escherichia coli O104 Serotypes Isolated From Cattle Feces Using Whole Genome Sequencing. PMID:29545780
Draft Genome Sequence of Vibrio penaeicida Strain TUMSAT-NU1, Isolated from Diseased Shrimp in Japan. PMID:29545299
Draft Genome Sequence of a Dictyoglomus sp. from an Enrichment Culture of a New Zealand Geothermal Spring. PMID:29545298
Draft Genome Sequences of Two Dickeya dianthicola Isolates from Potato. PMID:29545295
Phylogenomic Based Comparative Studies on Indian and American Commensal Staphylococcus epidermidis Isolates. PMID:29535698
Fitness Advantage of mcr-1-Bearing IncI2 and IncX4 Plasmids in Vitro. PMID:29535696
Genomic and Genotypic Characterization of Cylindrospermopsis raciborskii: Toward an Intraspecific Phylogenetic Evaluation by Comparative Genomics. PMID:29535689
Pseudomonas rhizophila S211, a New Plant Growth-Promoting Rhizobacterium with Potential in Pesticide-Bioremediation. PMID:29527191
In silico comparative analysis of GGDEF and EAL domain signaling proteins from the Azospirillum genomes. PMID:29523074
Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh. PMID:29519847
Draft Genome Sequence of Methylobacterium sp. Strain V23, Isolated from Accretion Ice of the Antarctic Subglacial Lake Vostok. PMID:29519839
Draft Genome Sequence of Lactobacillus helveticus Strain Lh 12 Isolated from Natural Whey Starter. PMID:29519838
Whole-Genome Sequence of Brucella melitensis CIIMS-BH-2, a Biovar 2 Strain Isolated from Human Blood. PMID:29519823
Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer. PMID:29515543
Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group. PMID:29509989
On Burkholderiales order microorganisms and cystic fibrosis in Russia. PMID:29504898
Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil. PMID:29503639
Metagenomic Analysis of a Biphenyl-Degrading Soil Bacterial Consortium Reveals the Metabolic Roles of Specific Populations. PMID:29497412
Draft Genome Sequence of Ezakiella peruensis Strain M6.X2, a Human Gut Gram-Positive Anaerobic Coccus. PMID:29496843
Draft Genome Sequence of Multidrug-Resistant Strain Citrobacter portucalensis MBTC-1222, Isolated from Uziza (Piper guineense) Leaves in Nigeria. PMID:29496838
Draft Genome Sequence of Plant Growth-Promoting and Drought-Tolerant Bacillus altitudinis FD48, Isolated from Rice Phylloplane. PMID:29496824
Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere. PMID:29492666
Exploring the arthritogenicity of Streptococcus dysgalactiae subspecies equisimilis. PMID:29482512
Genome Sequencing of Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella pneumoniae Isolated from Pigs and Abattoir Workers in Cameroon. PMID:29479347
Clinically Relevant ESBL-Producing K. pneumoniae ST307 and E. coli ST38 in an Urban West African Rat Population. PMID:29479341
New Aspects on Listeria monocytogenes ST5-ECVI Predominance in a Heavily Contaminated Cheese Processing Environment. PMID:29472901
Photosynthesis Is Widely Distributed among Proteobacteria as Demonstrated by the Phylogeny of PufLM Reaction Center Proteins. PMID:29472894
Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche. PMID:29472760
Complete Genome Sequence of EtG, the First Phage Sequenced from Erwinia tracheiphila. PMID:29472340
Genome Sequence of Azospirillum brasilense REC3, Isolated from Strawberry Plants. PMID:29472339
First Report of a Complete Genome Sequence of White spot syndrome virus from India. PMID:29472330
Draft Genome Sequence of a Propanotroph, Rhodococcus sp. Strain ENV425, Capable of Degrading Methyl tert-Butyl Ether and N-Nitrosodimethylamine. PMID:29472328
Genome analysis of two novel Pseudomonas strains exhibiting differential hypersensitivity reactions on tobacco seedlings reveals differences in nonflagellar T3SS organization and predicted effector proteins. PMID:29464939
Complete Sequence of the IncA/C1 Plasmid pCf587 Carrying blaPER-2 from Citrobacter freundii. PMID:29463531
Culture-Facilitated Comparative Genomics of the Facultative Symbiont Hamiltonella defensa. PMID:29452355
Draft Genome Sequence of Lactobacillus helveticus ATCC 12046. PMID:29449405
Draft Genome Sequence of Lactobacillus paracasei DUP 13076, Which Exhibits Potent Antipathogenic Effects against Salmonella enterica Serovars Enteritidis, Typhimurium, and Heidelberg. PMID:29449394
Draft Genome Sequence of Lactobacillus rhamnosus NRRL B-442, a Potential Probiotic Strain. PMID:29449386
Network Analyses in Plant Pathogens. PMID:29441045
Draft Genome Sequence of Cyanobacterium sp. Strain HL-69, Isolated from a Benthic Microbial Mat from a Magnesium Sulfate-Dominated Hypersaline Lake. PMID:29439050
Draft Genome Sequences of Acinetobacter and Bacillus Strains Isolated from Spacecraft-Associated Surfaces. PMID:29439046
Genomic Architecture of the Two Cold-Adapted Genera Exiguobacterium and Psychrobacter: Evidence of Functional Reduction in the Exiguobacterium antarcticum B7 Genome. PMID:29438502
Diversification of Secondary Metabolite Biosynthetic Gene Clusters Coincides with Lineage Divergence in Streptomyces. PMID:29438308
Expanding Primary Metabolism Helps Generate the Metabolic Robustness To Facilitate Antibiotic Biosynthesis in Streptomyces. PMID:29437921
Vibrio fischeri DarR Directs Responses to d-Aspartate and Represents a Group of Similar LysR-Type Transcriptional Regulators. PMID:29437849
High Genetic Plasticity in Multidrug-Resistant Sequence Type 3-IncHI2 Plasmids Revealed by Sequence Comparison and Phylogenetic Analysis. PMID:29437633
Complete Genome Sequence of Xanthomonas citri pv. anacardii Strain IBSBF2579 from Brazil. PMID:29437111
Draft Genome Sequence of a Trimethylamine-Producing Staphylococcus Isolate from Blood of a Coronary Atherosclerotic Heart Disease Patient. PMID:29437106
Draft Genome Sequence of Aeromonas hydrophila Strain Ae25, Isolated from a Septicemic Moribund Koi Carp (Cyprinus carpio) in Sri Lanka. PMID:29437097
Draft Genome Sequence of Escherichia coli Strain M15-4, a Typical Enteropathogenic E. coli Strain Isolated in Mexico. PMID:29437096
Draft Genome Sequences of Anaplasma phagocytophilum, A. marginale, and A. ovis Isolates from Different Hosts. PMID:29437094
Site-Specific Recombination at XerC/D Sites Mediates the Formation and Resolution of Plasmid Co-integrates Carrying a blaOXA-58- and TnaphA6-Resistance Module in Acinetobacter baumannii. PMID:29434581
Structural and Functional Properties of Exopolysaccharide Excreted by a Novel Bacillus anthracis (Strain PFAB2) of Hot Spring Origin. PMID:29434396
Genomic insights into Staphylococcus equorum KS1039 as a potential starter culture for the fermentation of high-salt foods. PMID:29433437
Genome sequence of Streptomyces gilvigriseus MUSC 26T isolated from mangrove forest. PMID:29428207
Characterization of Swedish Campylobacter coli clade 2 and clade 3 water isolates. PMID:29424055
Phylogenetic Diversity and Single-Cell Genome Analysis of "Melainabacteria", a Non-Photosynthetic Cyanobacterial Group, in the Termite Gut. PMID:29415909
Characterization of a novel lytic bacteriophage from an industrial Escherichia coli fermentation process and elimination of virulence using a heterologous CRISPR-Cas9 system. PMID:29411201
Evolution of the Quorum network and the mobilome (plasmids and bacteriophages) in clinical strains of Acinetobacter baumannii during a decade. PMID:29410443
Genome analysis of Mycoplasma synoviae strain MS-H, the most common M. synoviae strain with a worldwide distribution. PMID:29394882
Comparative genomics reveals differences in mobile virulence genes of Escherichia coli O103 pathotypes of bovine fecal origin. PMID:29389941
Genome sequence and comparative genomic analysis of a clinically important strain CD11-4 of Janibacter melonis isolated from celiac disease patient. PMID:29387173
Molecular epidemiology and comparative genomics of Campylobacter concisus strains from saliva, faeces and gut mucosal biopsies in inflammatory bowel disease. PMID:29382867
Planktonic microbial profiling in water samples from a Brazilian Amazonian reservoir. PMID:29380948
Complete genome sequence of Lactobacillus pentosus SLC13, isolated from mustard pickles, a potential probiotic strain with antimicrobial activity against foodborne pathogenic microorganisms. PMID:29375672
Comparative Genomics of Thalassobius Including the Description of Thalassobius activus sp. nov., and Thalassobius autumnalis sp. nov. PMID:29375512
Characterization of Antimicrobial-Producing Beneficial Bacteria Isolated from Huanglongbing Escape Citrus Trees. PMID:29375487
Metagenomic investigation of vestimentiferan tubeworm endosymbionts from Mid-Cayman Rise reveals new insights into metabolism and diversity. PMID:29374496
Draft Genome Sequence of Pantoea ananatis Strain 1.38, a Bacterium Isolated from the Rhizosphere of Oryza sativa var. Puntal That Shows Biotechnological Potential as an Inoculant. PMID:29371365
Genome Sequence of Rhizobium sullae HCNT1 Isolated from Hedysarum coronarium Nodules and Featuring Peculiar Denitrification Phenotypes. PMID:29371355
Complete Genome Sequences of the Plant Pathogens Dickeya solani RNS 08.23.3.1.A and Dickeya dianthicola RNS04.9. PMID:29371347
Genome Sequence of Pseudomonas plecoglossicida Strain NZBD9. PMID:29371345
Draft Genome Sequence of a Leptospira interrogans Strain Isolated from the Urine of an Asymptomatic Dog in Thailand. PMID:29371342
Fungal networks shape dynamics of bacterial dispersal and community assembly in cheese rind microbiomes. PMID:29362365
Magic Pools: Parallel Assessment of Transposon Delivery Vectors in Bacteria. PMID:29359196
Prey Range and Genome Evolution of Halobacteriovorax marinus Predatory Bacteria from an Estuary. PMID:29359184
Hybrid genome assembly and annotation of Paenibacillus pasadenensis strain R16 reveals insights on endophytic life style and antifungal activity. PMID:29351296
Seed Endophyte Microbiome of Crotalaria pumila Unpeeled: Identification of Plant-Beneficial Methylobacteria. PMID:29351192
Draft genome sequence of Brevibacterium epidermidis EZ-K02 isolated from nitrocellulose-contaminated wastewater environments. PMID:29349105
Taxonogenomic description of four new Clostridium species isolated from human gut: 'Clostridium amazonitimonense', 'Clostridium merdae', 'Clostridium massilidielmoense' and 'Clostridium nigeriense'. PMID:29348922
Complete Genome Sequence of Paracoccus yeei TT13, Isolated from Human Skin. PMID:29348361
Complete Genome Sequences of Three Moraxella osloensis Strains Isolated from Human Skin. PMID:29348360
Genome Sequence of Enterococcus mundtii EM01, Isolated from Bombyx mori Midgut and Responsible for Flacherie Disease in Silkworms Reared on an Artificial Diet. PMID:29348354
Draft Genome Sequence of Vibrio parahaemolyticus Strain M1-1, Which Causes Acute Hepatopancreatic Necrosis Disease in Shrimp in Vietnam. PMID:29348345
Environmental adaptation and vertical dissemination of ESBL-/pAmpC-producing Escherichia coli in an integrated broiler production chain in the absence of an antibiotic treatment. PMID:29345080
Genomic insights into Mycobacterium simiae human colonization. PMID:29340007
Challenges of Francisella classification exemplified by an atypical clinical isolate. PMID:29329757
Cyanobacterial photosynthesis under sulfidic conditions: insights from the isolate Leptolyngbya sp. strain hensonii. PMID:29328062
The Role for the Small Cryptic Plasmids As Moldable Vectors for Genetic Innovation in Aeromonas salmonicida subsp. salmonicida. PMID:29326751
Genome Sequence of Actinobacillus seminis Strain ATCC 15768, a Reference Strain of Ovine Pathogens That Causes Infections in Reproductive Organs. PMID:29326222
First Draft Genome Sequences of Two Bartonella tribocorum Strains from Laos and Cambodia. PMID:29326218
Draft Genome Sequence of Prochlorococcus marinus Strain XMU1401, Isolated from the Western Tropical North Pacific Ocean. PMID:29326216
Complete Genome Sequence of the Escherichia coli Phage Ayreon. PMID:29326205
Complete Genome Sequence of a Bacteriophage, pVco-5, That Infects Vibrio coralliilyticus, Which Causes Bacillary Necrosis in Pacific Oyster (Crassostrea gigas) Larvae. PMID:29326200
Physiological and Comparative Genomic Analysis of Arthrobacter sp. SRS-W-1-2016 Provides Insights on Niche Adaptation for Survival in Uraniferous Soils. PMID:29324691
Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential. PMID:29323202
Pan-genome analysis of the genus Finegoldia identifies two distinct clades, strain-specific heterogeneity, and putative virulence factors. PMID:29321635
Molecular processes underlying synergistic linuron mineralization in a triple-species bacterial consortium biofilm revealed by differential transcriptomics. PMID:29314727
Genome Characterization of the First Mimiviruses of Lineage C Isolated in Brazil. PMID:29312242
Sulfur Metabolism of Hydrogenovibrio thermophilus Strain S5 and Its Adaptations to Deep-Sea Hydrothermal Vent Environment. PMID:29312214
Phylogeny and putative virulence gene analysis of Bartonella bovis. PMID:29311425
Vibrio cholerae genomic diversity within and between patients. PMID:29306353
Metabolic capability and in situ activity of microorganisms in an oil reservoir. PMID:29304850
The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains. PMID:29304740
Draft Genome Sequence of the Predatory Marine Bacterium Halobacteriovorax sp. Strain JY17. PMID:29301887
Draft Genome Sequence of Marinobacter sp. Strain ANT_B65, Isolated from Antarctic Marine Sponge. PMID:29301884
Draft Genome Sequence of Streptomyces sp. Strain JV178, a Producer of Clifednamide-Type Polycyclic Tetramate Macrolactams. PMID:29301882
The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains. PMID:29299109
Complete genome sequence of esterase-producing bacterium Croceicoccus marinus E4A9T. PMID:29299108
Genomics of Clostridium taeniosporum, an organism which forms endospores with ribbon-like appendages. PMID:29293521
Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates. PMID:29291727
Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves. PMID:29284014
Strong Genomic and Phenotypic Heterogeneity in the Aeromonas sobria Species Complex. PMID:29276504
Synergistic Antimicrobial Interaction between Honey and Phage against Escherichia coli Biofilms. PMID:29276503
MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome. PMID:29273626
Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile. PMID:29270251
Complete genome sequencing and genomic characterization of two Escherichia coli strains co-producing MCR-1 and NDM-1 from bloodstream infection. PMID:29263349
Quinones are growth factors for the human gut microbiota. PMID:29262868
Homoacetogenesis in Deep-Sea Chloroflexi, as Inferred by Single-Cell Genomics, Provides a Link to Reductive Dehalogenation in Terrestrial Dehalococcoidetes. PMID:29259088
MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data. PMID:29258574
Study of mcr-1 Gene-Mediated Colistin Resistance in Enterobacteriaceae Isolated from Humans and Animals in Different Countries. PMID:29257080
The Emerging Fish Pathogen Flavobacterium spartansii Isolated from Chinook Salmon: Comparative Genome Analysis and Molecular Manipulation. PMID:29250046
A Coxiella mutualist symbiont is essential to the development of Rhipicephalus microplus. PMID:29242567
First Report of a Whole-Genome Shotgun Sequence of a Clinical Enterococcus faecalis Sequence Type 6 Strain from South Africa. PMID:29242225
Whole-Genome Sequences of Three Streptococcus macedonicus Strains Isolated from Italian Cheeses in the Veneto Region. PMID:29242223
Draft Genome Sequence of Loktanella cinnabarina Strain XM1 Isolated from Coastal Surface Water. PMID:29242219
Draft Genome Sequence of Immunobiotic Lactobacillus rhamnosus Strain IBL027, a Potential Adjuvant for Mucosal Vaccine Development. PMID:29242218
Draft Genome Sequence of Glycomyces fuscus TRM 49117, Isolated from a Hypersaline Soil Sample. PMID:29242217
Discovery of carbamate degrading enzymes by functional metagenomics. PMID:29240834
Genomic features of "Candidatus Venteria ishoeyi", a new sulfur-oxidizing macrobacterium from the Humboldt Sulfuretum off Chile. PMID:29236755
Delineating the Origins of Vibrio parahaemolyticus Isolated from Outbreaks of Acute Hepatopancreatic Necrosis Disease in Asia by the Use of Whole Genome Sequencing. PMID:29234316
Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla. PMID:29234309
Diversification of Type VI Secretion System Toxins Reveals Ancient Antagonism among Bee Gut Microbes. PMID:29233893
Draft genome sequence of Paenibacillus sp. EZ-K15 isolated from wastewater systems. PMID:29233178
From the wound to the bench: exoproteome interplay between wound-colonizing Staphylococcus aureus strains and co-existing bacteria. PMID:29233035
Comparative genome analysis of the vineyard weed endophyte Pseudomonas viridiflava CDRTc14 showing selective herbicidal activity. PMID:29229911
Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation. PMID:29227468
Diverse Cone-Snail Species Harbor Closely Related Streptomyces Species with Conserved Chemical and Genetic Profiles, Including Polycyclic Tetramic Acid Macrolactams. PMID:29225593
Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. PMID:29222443
CRISPR-Cas Systems in Bacteroides fragilis, an Important Pathobiont in the Human Gut Microbiome. PMID:29218031
Draft Genome Sequence of Pseudomonas stutzeri Strain 19, an Isolate Capable of Efficient Degradation of Aromatic Hydrocarbons. PMID:29217799
Draft Genome Sequence of Pseudomonas fragi Strain DBC, Which Has the Ability To Degrade High-Molecular-Weight Polyaromatic Hydrocarbons. PMID:29217795
Draft Genome Sequence of Polyaromatic Hydrocarbon-Degrading Bacterium Bacillus subtilis SR1, Which Has Plant Growth-Promoting Attributes. PMID:29217793
Genomic and phenotypic characteristics of Swedish C. jejuni water isolates. PMID:29216271
Insights into the genome and proteome of Sphingomonas paucimobilis strain 20006FA involved in the regulation of polycyclic aromatic hydrocarbon degradation. PMID:29214360
Comparative genomics reveals the presence of putative toxin-antitoxin system in Wolbachia genomes. PMID:29214346
From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen. PMID:29212448
Draft genome of the emerging pathogen, Kocuria marina, isolated from a wild urban rat. PMID:29211248
The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling. PMID:29208946
Novel large-scale chromosomal transfer in Bacteroides fragilis contributes to its pan-genome and rapid environmental adaptation. PMID:29208130
Mutations in Genes Encoding Penicillin-Binding Proteins and Efflux Pumps Play a Role in β-Lactam Resistance in Helicobacter cinaedi. PMID:29203490
Genomic characterization of a new endophytic Streptomyces kebangsaanensis identifies biosynthetic pathway gene clusters for novel phenazine antibiotic production. PMID:29201559
Prevalence of Flp Pili-Encoding Plasmids in Cutibacterium acnes Isolates Obtained from Prostatic Tissue. PMID:29201018
Functional sequencing read annotation for high precision microbiome analysis. PMID:29194524
Two Draft Genome Sequences of Sphingobacterium sp. Strains Isolated from Honey. PMID:29192084
Draft Genome Sequence of Alcaligenes faecalis BDB4, a Polyaromatic Hydrocarbon-Degrading Bacterium Isolated from Crude Oil-Contaminated Soil. PMID:29192081
Draft Genome Sequence of Heavy Metal-Resistant Soil Bacterium Serratia marcescens S2I7, Which Has the Ability To Degrade Polyaromatic Hydrocarbons. PMID:29192080
Identification and characterization of the Streptococcus pneumoniae type 3 capsule-specific glycoside hydrolase of Paenibacillus species 32352. PMID:29190349
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community. PMID:29184101
Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway. PMID:29183985
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes. PMID:29183281
Pool deconvolution approach for high-throughput gene mining from Bacillus thuringiensis. PMID:29177935
Double-Face Meets the Bacterial World: The Opportunistic Pathogen Stenotrophomonas maltophilia. PMID:29170656
Analysis of Fusobacterium persistence and antibiotic response in colorectal cancer. PMID:29170280
A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites. PMID:29168502
In Silico and Experimental Data Claiming Safety Aspects and Beneficial Attributes of the Bacteriocinogenic Strain Enterococcus faecalis B3A-B3B. PMID:29168155
Complete Genome Sequences of Two Strains of the Meat Spoilage Bacterium Brochothrix thermosphacta Isolated from Ground Chicken. PMID:29167264
Draft Genome Sequence of an Indian Marine Cyanobacterial Strain with Fast Growth and High Polyglucan Content. PMID:29167258
Draft Genome Sequence of Pseudomonas fluorescens Strain TR3, a Potential Biocontrol Agent against the Rice Blast Fungus Magnaporthe oryzae. PMID:29167257
Draft Genome Sequence of the Arsenic-Resistant Bacterium Brevundimonas denitrificans TAR-002T. PMID:29167254
Draft Genome Sequence of Sphingobium fuliginis OMI, a Bacterium That Degrades Alkylphenols and Bisphenols. PMID:29167253
Draft Genome Sequence of Tepidibacter mesophilus Strain JCM 16806T Isolated from Soil Polluted by Crude Oil in China. PMID:29167249
Complete Genome Sequences of Seven Vibrio cholerae Phages Isolated in China. PMID:29167238
Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches. PMID:29163426
Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs. PMID:29163388
Genome sequence and description of Mobilicoccus massiliensis sp. nov. isolated from the stool of a Nigerian boy with kwashiorkor. PMID:29158905
Whole-Genome Characterization of Bacillus cereus Associated with Specific Disease Manifestations. PMID:29158433
Comparative Genomics of Myxobacterial Chemosensory Systems. PMID:29158239
Whole genome and transcriptome analysis reveal MALDI-TOF MS and SDS-PAGE have limited performance for the detection of the key outer membrane protein in carbapenem-resistant Klebsiella pneumoniae isolates. PMID:29156685
Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme. PMID:29156585
Complete genome sequence of Pseudomonas corrugata strain RM1-1-4, a stress protecting agent from the rhizosphere of an oilseed rape bait plant. PMID:29152037
FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics. PMID:29150672
Assessing species biomass contributions in microbial communities via metaproteomics. PMID:29146960
Whole-Genome Shotgun Sequences of Three Multidrug-Resistant Mycobacterium tuberculosis Strains Isolated from Morocco. PMID:29146858
Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain UPM 260, Isolated from a Broiler Chicken in Perak, Malaysia. PMID:29146857
Draft Genome Sequence of Entomopathogenic Brevibacillus laterosporus Strain Lak 1210, an Alkaliphilic Chitin Degrader. PMID:29146855
Complete Genome Sequences of Vibrio cholerae-Specific Bacteriophages 24 and X29. PMID:29146843
Draft Genome Sequence of the Naturally Competent Bacillus simplex Strain WY10. PMID:29146837
An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics. PMID:29141959
Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. PMID:29138307
Isocitrate dehydrogenase mutation in Vibrio anguillarum results in virulence attenuation and immunoprotection in rainbow trout (Oncorhynchus mykiss). PMID:29137620
Detection of virulence-related genes in Lactococcus garvieae and their expression in response to different conditions. PMID:29134547
Complete Genome Sequence of Bacillus altitudinis Type Strain SGAir0031 Isolated from Tropical Air Collected in Singapore. PMID:29122878
Draft Genome Sequences of Ciprofloxacin-Resistant Salmonella enterica Strains with Multiple-Antibiotic Resistance, Isolated from Imported Foods. PMID:29122873
Draft Genome Sequences of Clinical and Nonclinical Isolates of Klebsiella spp. Exhibiting Nonheritable Tolerance toward Antimicrobial Compounds. PMID:29122870
Microaerophilic alkane degradation in Pseudomonas extremaustralis: a transcriptomic and physiological approach. PMID:29116430
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks. PMID:29112720
Origin of the plasmid-mediated fosfomycin resistance gene fosA3. PMID:29106538
Heat Resistance Mediated by pLM58 Plasmid-Borne ClpL in Listeria monocytogenes. PMID:29104933
Genome-level comparisons provide insight into the phylogeny and metabolic diversity of species within the genus Lactococcus. PMID:29100523
Metagenomic analysis reveals potential interactions in an artificial coculture. PMID:29098480
Draft Genome Sequence of Staphylococcus aureus 4185, a Strain That Produces Aureocyclicin 4185. PMID:29097478
Draft Genome Sequence of a Mexican Community-Associated Methicillin-Resistant Staphylococcus epidermidis Strain. PMID:29097472
Complete Genome Sequence of Delftia acidovorans RAY209, a Plant Growth-Promoting Rhizobacterium for Canola and Soybean. PMID:29097468
Genome Sequences of the Mycobacterium tuberculosis H37Rv-ptkA Deletion Mutant and Its Parental Strain. PMID:29097456
Analysis of the CRISPR-Cas system in bacteriophages active on epidemic strains of Vibrio cholerae in Bangladesh. PMID:29093571
In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina. PMID:29087375
The Pelagic Bacterium Paraphotobacterium marinum Has the Smallest Complete Genome Within the Family Vibrionaceae. PMID:29085348
Genomic features, phylogenetic relationships, and comparative genomics of Elizabethkingia anophelis strain EM361-97 isolated in Taiwan. PMID:29085032
Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify. PMID:29084347
Characterization of oqxAB in Escherichia coli Isolates from Animals, Retail Meat, and Human Patients in Guangzhou, China. PMID:29081769
Genomic Analysis of Bacillus licheniformis CBA7126 Isolated from a Human Fecal Sample. PMID:29081747
Staphylococcus edaphicus sp. nov., Isolated in Antarctica, Harbors the mecC Gene and Genomic Islands with a Suspected Role in Adaptation to Extreme Environments. PMID:29079617
Bacillus kwashiorkori sp. nov., a new bacterial species isolated from a malnourished child using culturomics. PMID:29076642
First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ. PMID:29075368
Draft Genome Sequences of Two Brazilian Cyanobacterial Strains of Cylindrospermopsis raciborskii: Differences in Membrane Transporters, Saxitoxin Production, and Antioxidant Activities. PMID:29074674
Draft Whole-Genome Sequence of Psychrotrophic Arthrobacter sp. Strain 7749, Isolated from Antarctic Marine Sediments with Applications in Enantioselective Alcohol Oxidation. PMID:29074668
Draft Genome Sequence of Arsenic-Resistant Microbacterium sp. Strain SZ1 Isolated from Arsenic-Bearing Gold Ores. PMID:29074663
Genome Sequence of Kocuria polaris Strain CD08_4, an Isolate from the Duodenal Mucosa of a Celiac Disease Patient. PMID:29074657
Legionella Becoming a Mutualist: Adaptive Processes Shaping the Genome of Symbiont in the Louse Polyplax serrata. PMID:29069349
Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents. PMID:29066755
Comparative Genomic Analysis of Globally Dominant ST131 Clone with Other Epidemiologically Successful Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages. PMID:29066550
Complete Genome Sequence and Comparative Analysis of Staphylococcus condimenti DSM 11674, a Potential Starter Culture Isolated from Soy Sauce Mash. PMID:29057223
Genomic Analysis of Bacillus sp. Strain B25, a Biocontrol Agent of Maize Pathogen Fusarium verticillioides. PMID:29051980
Draft Genome Sequence of a Novel Chitinophaga sp. Strain, MD30, Isolated from a Biofilm in an Air Conditioner Condensate Pipe. PMID:29051259
Draft Genome Sequence of Halophilic Hahella sp. Strain CCB-MM4, Isolated from Matang Mangrove Forest in Perak, Malaysia. PMID:29051257
Complete Genome Sequence of Serotype III Streptococcus agalactiae Sequence Type 17 Strain 874391. PMID:29051249
Draft Genome Sequence of a Sporulating and Motile Strain of Lachnotalea glycerini Isolated from Water in Québec City, Canada. PMID:29051240
Draft Genome Sequence of an Atypical Highly Virulent Rabbit Staphylococcus aureus Strain. PMID:29051238
High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community. PMID:29051233
Complete Genome Sequence of Rathayibacter toxicus Phage NCPPB3778. PMID:29051232
Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments. PMID:29039843
Extending SEQenv: a taxa-centric approach to environmental annotations of 16S rDNA sequences. PMID:29038749
Newly Isolated Bacteriophages from the Podoviridae, Siphoviridae, and Myoviridae Families Have Variable Effects on Putative Novel Dickeya spp. PMID:29033917
Influence of resistance breeding in common bean on rhizosphere microbiome composition and function. PMID:29028000
Revealing the Saline Adaptation Strategies of the Halophilic Bacterium Halomonas beimenensis through High-throughput Omics and Transposon Mutagenesis Approaches. PMID:29026163
Draft Genome Sequence of Brevibacillus laterosporus OSY-I1, a Strain That Produces Brevibacillin, Which Combats Drug-Resistant Gram-Positive Bacteria. PMID:29025947
Draft Genome Sequence of Bacillus aryabhattai Strain PHB10, a Poly(3-Hydroxybutyrate)-Accumulating Bacterium Isolated from Domestic Sewerage. PMID:29025943
Draft Genome Sequence of Romboutsia maritimum sp. nov. Strain CCRI-22766T, Isolated from Coastal Estuarine Mud. PMID:29025937
Draft Genome Sequence of Salmonella enterica Serovar Senftenberg 070885 and Its Linalool-Adapted Mutant. PMID:29025934
Complete Genome Sequence of a Porcine Epidemic Diarrhea Virus Isolated in Belgorod, Russia, in 2008. PMID:29025931
Draft Genome Sequence of Lactobacillus plantarum Strain A6, a Strong Acid Producer Isolated from a Vietnamese Fermented Sausage (Nem Chua). PMID:29025928
Transfer and Persistence of a Multi-Drug Resistance Plasmid in situ of the Infant Gut Microbiota in the Absence of Antibiotic Treatment. PMID:29018426
Draft Genome Sequence of Extended-Spectrum Beta-Lactamase-Producing Serratia fonticola BWK15 Isolated from Feces of Anas penelope. PMID:28983007
Draft Genome Sequence of Gordonia lacunae BS2T. PMID:28982989
Draft Genome Sequence of Romboutsia weinsteinii sp. nov. Strain CCRI-19649T Isolated from Surface Water. PMID:28982987
Draft Genome Sequence of Chloracidobacterium sp. CP2_5A, a Phototrophic Member of the Phylum Acidobacteria Recovered from a Japanese Hot Spring. PMID:28982986
New Insights into the Diversity of the Genus Faecalibacterium. PMID:28970823
Expression of a Peptidoglycan Hydrolase from Lytic Bacteriophages Atu_ph02 and Atu_ph03 Triggers Lysis of Agrobacterium tumefaciens. PMID:28970228
PATRIC as a unique resource for studying antimicrobial resistance. PMID:28968762
Draft Genome Sequences of Biofilm-Forming and Non-Biofilm-Forming Nontyphoidal Salmonella enterica Serovars. PMID:28963222
Draft Genome Sequences of Salmonella enterica Isolates Containing Incompatibility Group I1 Plasmids from Swine, Poultry, and Human Sources. PMID:28963220
Draft Genome Sequence of Methanobrevibacter smithii Isolate WWM1085, Obtained from a Human Stool Sample. PMID:28963219
Full Sequencing and Genomic Analysis of Three emm75 Group A Streptococcus Strains Recovered in the Course of an Epidemiological Shift in French Brittany. PMID:28963207
Galleria mellonella as an infection model to investigate virulence of Vibrio parahaemolyticus. PMID:28960137
Phylogenomic, Pan-genomic, Pathogenomic and Evolutionary Genomic Insights into the Agronomically Relevant Enterobacteria Pantoea ananatis and Pantoea stewartii. PMID:28959245
Population Structure and Local Adaptation of MAC Lung Disease Agent Mycobacterium avium subsp. hominissuis. PMID:28957464
Glimpse into the genome sequence of a multidrug-resistant Acinetobacter pittii ST950 clinical isolate carrying the blaOXA-72 and blaOXA-533 genes in China. PMID:28954001
A Novel Multifunctional β-N-Acetylhexosaminidase Revealed through Metagenomics of an Oil-Spilled Mangrove. PMID:28952541
Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome. PMID:28951866
Wholly Rickettsia! Reconstructed Metabolic Profile of the Quintessential Bacterial Parasite of Eukaryotic Cells. PMID:28951473
Comparative genomic analysis and characteristics of NCCP15740, the major type of enterotoxigenic Escherichia coli in Korea. PMID:28943892
A Lytic Providencia rettgeri Virus of Potential Therapeutic Value Is a Deep-Branching Member of the T5virus Genus. PMID:28939601
Draft Genome Sequence of Lactococcus sp. Strain Rs-Y01, Isolated from the Gut of the Lower Termite Reticulitermes speratus. PMID:28935745
Genome Sequences for Multiple Clavibacter Strains from Different Subspecies. PMID:28935724
The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen. PMID:28934377
Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia. PMID:28934361
The Gut Commensal Microbiome of Drosophila melanogaster Is Modified by the Endosymbiont Wolbachia. PMID:28932814
Insights from the draft genome into the pathogenicity of a clinical isolate of Elizabethkingia meningoseptica Em3. PMID:28932346
Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia. PMID:28932212
Genome characterization of two bile-isolated Vibrio fluvialis strains: an insight into pathogenicity and bile salt adaption. PMID:28928424
Genome sequence of Streptomyces mangrovisoli MUSC 149T isolated from intertidal sediments. PMID:28927873
Complete characterization of new isolates of Neptunomonas phycophila leads to emend its description and opens possibilities of biotechnological applications. PMID:28925024
Genome Organization of Sphingobium indicum B90A: An Archetypal Hexachlorocyclohexane (HCH) Degrading Genotype. PMID:28922869
Alterations of c-di-GMP turnover proteins modulate semi-constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli. PMID:28913868
Noncontiguous finished genome sequences and descriptions of 'Paenibacillus bouchesdurhonensis,' 'Paenibacillus rubinfantis,' 'Paenibacillus senegalimassiliensis' and 'Paenibacillus tuaregi' identified by culturomics. PMID:28912952
Draft Genome Sequence of Paenibacillus sp. XY044, a Potential Plant Growth Promoter Isolated from a Tea Plant. PMID:28912334
Draft Genome Sequence of Streptomyces sp. XY006, an Endophyte Isolated from Tea (Camellia sinensis). PMID:28912322
Draft Genome Sequence of Bacillus thuringiensis subsp. aizawai HD133. PMID:28912316
Complete Genome Sequence of a Shiga Toxin-Producing Enterobacter cloacae Clinical Isolate. PMID:28912313
Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits. PMID:28910965
Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium "Candidatus Nitrospira nitrosa". PMID:28905001
Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis. PMID:28904741
Finegoldia magna Isolated from Orthopedic Joint Implant-Associated Infections. PMID:28904182
Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome. PMID:28902868
Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton. PMID:28895945
Identification of Multiple Dehalogenase Genes Involved in Tetrachloroethene-to-Ethene Dechlorination in a Dehalococcoides-Dominated Enrichment Culture. PMID:28894752
Complete Genome Sequences of Seven Strains Composing a Model Bacterial Community of Maize Roots. PMID:28883152
Draft Genome Sequence of the Endophytic Bacterium Variovorax paradoxus KB5, Which Has Antagonistic Activity against a Phytopathogen, Pseudomonas syringae pv. tomato DC3000. PMID:28883145
Genome Sequence of Bradyrhizobium mercantei Strain SEMIA 6399T, Isolated from Nodules of Deguelia costata in Brazil. PMID:28883142
Metagenome-Assembled Genome Sequences of Acetobacterium sp. Strain MES1 and Desulfovibrio sp. Strain MES5 from a Cathode-Associated Acetogenic Microbial Community. PMID:28883141
Draft Genome Sequence of Comamonas testosteroni R2, Consisting of Aromatic Compound Degradation Genes for Phenol Hydroxylase. PMID:28883136
Insights into the Draft Genome Sequence of a Haitian Variant Vibrio cholerae Strain Isolated from a Clinical Setting in Kerala, South India. PMID:28883135
Draft Genome Sequence of a Pseudomonas aeruginosa NA04 Bacterium Isolated from an Entomopathogenic Nematode. PMID:28883130
Similar levels of gene content variation observed for Pseudomonas syringae populations extracted from single and multiple host species. PMID:28880925
Key features of mcr-1-bearing plasmids from Escherichia coli isolated from humans and food. PMID:28878890
Draft genome sequences of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from human patients. PMID:28878860
Culture-independent metagenomics supports discovery of uncultivable bacteria within the genus Chlamydia. PMID:28878306
Halotolerant aminopeptidase M29 from Mesorhizobium SEMIA 3007 with biotechnological potential and its impact on biofilm synthesis. PMID:28878230
Community-like genome in single cells of the sulfur bacterium Achromatium oxaliferum. PMID:28878209
The rapid in vivo evolution of Pseudomonas aeruginosa in ventilator-associated pneumonia patients leads to attenuated virulence. PMID:28878043
FunctionAnnotator, a versatile and efficient web tool for non-model organism annotation. PMID:28874813
Genome Analysis of Staphylococcus capitis TE8 Reveals Repertoire of Antimicrobial Peptides and Adaptation Strategies for Growth on Human Skin. PMID:28874737
Identification of Novel Conjugative Plasmids with Multiple Copies of fosB that Confer High-Level Fosfomycin Resistance to Vancomycin-Resistant Enterococci. PMID:28861056
Genomic Characteristics of Bifidobacterium thermacidophilum Pig Isolates and Wild Boar Isolates Reveal the Unique Presence of a Putative Mobile Genetic Element with tetW for Pig Farm Isolates. PMID:28861055
Genome Sequence of Rhizobium esperanzae Type Strain CNPSo 668, Isolated from Phaseolus vulgaris Nodules in Mexico. PMID:28860263
Complete Genome Sequence of Vibrio sp. Strain 2521-89, a Close Relative of Vibrio cholerae Isolated from Lake Water in New Mexico, USA. PMID:28860256
Whole-Genome Sequence and Methylome Analysis of the Freshwater Colorless Sulfur Bacterium Thioflexothrix psekupsii D3. PMID:28860255
Draft Genome Sequence of Photorhabdus luminescens HIM3 Isolated from an Entomopathogenic Nematode in Agricultural Soils. PMID:28860237
Genomic insights of Pannonibacter phragmitetus strain 31801 isolated from a patient with a liver abscess. PMID:28857514
Draft genome sequence of an endophytic bacterium, Paenibacillus tyrfis strain SUK123, isolated from Santiria apiculata stem. PMID:28856101
Genome of Pseudomonas nitroreducens DF05 from dioxin contaminated sediment downstream of the San Jacinto River waste pits reveals a broad array of aromatic degradation gene determinants. PMID:28856100
Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis. PMID:28855266
Comparative Genomics of the Dual-Obligate Symbionts from the Treehopper, Entylia carinata (Hemiptera: Membracidae), Provide Insight into the Origins and Evolution of an Ancient Symbiosis. PMID:28854637
Comparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles. PMID:28851865
Genome Reduction for Niche Association in Campylobacter Hepaticus, A Cause of Spotty Liver Disease in Poultry. PMID:28848714
The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder. PMID:28843021
Complete sequences of two novel bla NDM-1-harbouring plasmids from two Acinetobacter towneri isolates in China associated with the acquisition of Tn125. PMID:28839253
Genome Sequence of Clostridium botulinum Strain Adk2012 Associated with a Foodborne Botulinum Case in Tottori, Japan, in 2012. PMID:28839036
Complete Genome Sequence of the Yogurt Isolate Lactobacillus delbrueckii subsp. bulgaricus ACA-DC 87. PMID:28839034
Genome Sequence of Pantoea ananatis Strain AMG 501, a Plant Growth-Promoting Bacterium Isolated from Rice Leaves Grown in Paddies of Southern Spain. PMID:28839029
Draft Genome Sequence of Pacificimonas aurantium Type Strain JLT2012, Isolated from the Seawater of the Pacific Ocean. PMID:28839015
Investigation of potential targets of Porphyromonas CRISPRs among the genomes of Porphyromonas species. PMID:28837670
In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases. PMID:28837656
Genomic diversification of giant enteric symbionts reflects host dietary lifestyles. PMID:28835538
Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments. PMID:28835260
Microbial communities in the reef water at Kham Island, lower Gulf of Thailand. PMID:28828243
Metabolic Reconstruction and Modeling Microbial Electrosynthesis. PMID:28827682
Comparative Transcriptomics of Bacillus mycoides Strains in Response to Potato-Root Exudates Reveals Different Genetic Adaptation of Endophytic and Soil Isolates. PMID:28824604
Analysis and comparative genomics of R997, the first SXT/R391 integrative and conjugative element (ICE) of the Indian Sub-Continent. PMID:28819148
Draft Genome Sequence of Lactobacillus fermentum BFE 6620, a Potential Starter Culture for African Vegetable Foods, Isolated from Fermented Cassava. PMID:28818901
The draft genome of the hyperthermophilic archaeon Pyrodictium delaneyi strain hulk, an iron and nitrate reducer, reveals the capacity for sulfate reduction. PMID:28814988
Genomic Analysis of the Evolution of Phototrophy among Haloalkaliphilic Rhodobacterales. PMID:28810712
Complete Genome Analysis of Thermus parvatiensis and Comparative Genomics of Thermus spp. Provide Insights into Genetic Variability and Evolution of Natural Competence as Strategic Survival Attributes. PMID:28798737
Draft Genome Sequence of the Nitrogen-Fixing Rhizobium sullae Type Strain IS123T Focusing on the Key Genes for Symbiosis with its Host Hedysarum coronarium L. PMID:28798728
Draft Genome Sequence of Mycobacterium avium 11. PMID:28798178
Draft Genome Sequence of Magnetospirillum sp. Strain 15-1, a Denitrifying Toluene Degrader Isolated from a Planted Fixed-Bed Reactor. PMID:28798176
Next generation sequencing reveals the antibiotic resistant variants in the genome of Pseudomonas aeruginosa. PMID:28797043
Whole genome sequencing of Microbacterium sp. AISO3 from polluted San Jacinto River sediment reveals high bacterial mobility, metabolic versatility and heavy metal resistance. PMID:28794988
Whole genome of Klebsiella aerogenes PX01 isolated from San Jacinto River sediment west of Baytown, Texas reveals the presence of multiple antibiotic resistance determinants and mobile genetic elements. PMID:28794987
Genome characterization of a novel binary toxin-positive strain of Clostridium difficile and comparison with the epidemic 027 and 078 strains. PMID:28794800
Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome. PMID:28794175
Thermodynamic Constraints Improve Metabolic Networks. PMID:28793222
Emergence of a Streptococcus dysgalactiae subspecies equisimilis stG62647-lineage associated with severe clinical manifestations. PMID:28790435
Structure and application of antifreeze proteins from Antarctic bacteria. PMID:28784139
Metagenomic Characterization of Candidatus Smithella cisternae Strain M82_1, a Syntrophic Alkane-Degrading Bacteria, Enriched from the Shengli Oil Field. PMID:28781346
The invasome of Salmonella Dublin as revealed by whole genome sequencing. PMID:28778189
Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill. PMID:28777379
Draft Genome Sequences of Bacillus subtilis Strain DKU_NT_01 Isolated from Traditional Korean Food Containing Soybean (Chung-gook-jang). PMID:28774991
Complete Genome Sequence of Achromobacter denitrificans PR1. PMID:28774990
Draft Genome Sequence of Mycobacterium peregrinum Isolated from an HIV-Positive Patient in South Africa. PMID:28774988
Draft Genome Sequences of the Multiresistant Escherichia coli C20 Strain, Isolated from Domestic Chicken Gut Microbiota. PMID:28774986
Draft Genome Sequence of Flavobacteriumpsychrophilum Strain SSADA-1411, Isolated from an Ayu (Plecoglossus altivelis altivelis) Migrating Downriver To Spawn in the Shimanto River, Kochi, Japan. PMID:28774983
Draft Genome Sequence of Cronobacter sakazakii GP1999, Sequence Type 145, an Epiphytic Isolate Obtained from the Tomato's Rhizoplane/Rhizosphere Continuum. PMID:28774978
Draft Genome Sequence of Stenotrophomonas bentonitica BII-R7T, a Selenite-Reducing Bacterium Isolated from Spanish Bentonites. PMID:28774976
First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile. PMID:28770028
Complete genome sequence of a commensal bacterium, Hafnia alvei CBA7124, isolated from human feces. PMID:28770009
Effect of Nickel and Cobalt on Methanogenic Enrichment Cultures and Role of Biogenic Sulfide in Metal Toxicity Attenuation. PMID:28769906
Novel Pelagic Iron-Oxidizing Zetaproteobacteria from the Chesapeake Bay Oxic-Anoxic Transition Zone. PMID:28769885
Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources. PMID:28768482
Bradyrhizobium elkanii nod regulon: insights through genomic analysis. PMID:28767122
Draft genome sequence of Exiguobacterium aurantiacum strain PN47 isolate from saline ponds, known as "Salar del Huasco", located in the Altiplano in the North of Chile. PMID:28757098
Genome Sequence and Composition of a Tolyporphin-Producing Cyanobacterium-Microbial Community. PMID:28754701
Salmonella enterica serovar Infantis from Food and Human Infections, Switzerland, 2010-2015: Poultry-Related Multidrug Resistant Clones and an Emerging ESBL Producing Clonal Lineage. PMID:28751886
Draft Genome Sequences of Saccharibacter sp. Strains 3.A.1 and M18 Isolated from Honey and a Honey Bee (Apis mellifera) Stomach. PMID:28751408
Genome Sequence of Pantoea sp. Strain 1.19, Isolated from Rice Rhizosphere, with the Capacity To Promote Growth of Legumes and Nonlegumes. PMID:28751401
Complete Genome Sequence of the Sourdough Isolate Lactobacillus zymae ACA-DC 3411. PMID:28751400
Draft Genome Sequence of Enterococcus faecalis DD14, a Bacteriocinogenic Lactic Acid Bacterium with Anti-Clostridium Activity. PMID:28751398
Draft Genome Sequence of Rathayibacter sp. Strain VKM Ac-2630 Isolated from Leaf Gall Induced by the Knapweed Nematode Mesoanguina picridis on Acroptilon repens. PMID:28751392
Complete Genome Sequence of Bacillus horikoshii Strain 20a from Cuatro Cienegas, Coahuila, Mexico. PMID:28751383
Genome Sequence of Zymomonas mobilis subsp. mobilis NRRL B-1960. PMID:28751381
In Silico Prediction of Antibiotic Resistance in Mycobacterium ulcerans Agy99 through Whole Genome Sequence Analysis. PMID:28749770
Insights into Cedecea neteri strain M006 through complete genome sequence, a rare bacterium from aquatic environment. PMID:28748024
Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles. PMID:28744269
Broad-range lytic bacteriophages that kill Staphylococcus aureus local field strains. PMID:28742812
A novel genetic variant of Streptococcus pneumoniae serotype 11A discovered in Fiji. PMID:28736074
Draft Genome Sequence of the Deep-Sea Bacterium Moritella sp. JT01 and Identification of Biotechnologically Relevant Genes. PMID:28733934
Transcriptional Modulation of Transport- and Metabolism-Associated Gene Clusters Leading to Utilization of Benzoate in Preference to Glucose in Pseudomonas putida CSV86. PMID:28733285
Whole-Genome Sequences of 14 Strains of Bradyrhizobium canariense and 1 Strain of Bradyrhizobium japonicum Isolated from Lupinus spp. in Algeria. PMID:28729275
Genome Sequences of Two Shewanella spp. Isolated from the Gut of the Sea Cucumber Apostichopus japonicus (Selenka, 1867). PMID:28729274
Draft Genome Sequence of Microbacterium sp. Strain LEMMJ01, Isolated from Antarctic Ornithogenic Soil. PMID:28729273
Whole-Genome Sequence of Acinetobacter pittii HUMV-6483 Isolated from Human Urine. PMID:28729271
Draft Genome Sequences of Three Lactobacillusparacasei Strains, Members of the Nonstarter Microbiota of Mature Cheddar Cheese. PMID:28729270
Draft Genome Sequence of Root-Associated Sugarcane Growth-Promoting Microbispora sp. Strain GKU 823. PMID:28729268
Genome Sequences of Two Listeria monocytogenes Strains from Nectarines Associated with Listeriosis in 2014. PMID:28729255
Genome assembly of Chryseobacterium sp. strain IHBB 10212 from glacier top-surface soil in the Indian trans-Himalayas with potential for hydrolytic enzymes. PMID:28725557
Mucin Cross-Feeding of Infant Bifidobacteria and Eubacterium hallii. PMID:28721502
Detection of mcr-1-Carrying Escherichia coli Causing Bloodstream Infection in a New York City Hospital: Avian Origins, Human Concerns? PMID:28721352
Draft genome sequence of Bradyrhizobium paxllaeri LMTR 21T isolated from Lima bean (Phaseolus lunatus) in Peru. PMID:28721334
Novel Fri1-like Viruses Infecting Acinetobacter baumannii-vB_AbaP_AS11 and vB_AbaP_AS12-Characterization, Comparative Genomic Analysis, and Host-Recognition Strategy. PMID:28714913
Enzymatic Mechanism for Arabinan Degradation and Transport in the Thermophilic Bacterium Caldanaerobius polysaccharolyticus. PMID:28710263
Functionality of tRNAs encoded in a mobile genetic element from an acidophilic bacterium. PMID:28708455
Noncontiguous finished genome sequences and description of Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilinigeriensis, Bacillus phocaeensis and Bacillus tuaregi, five new species identified by culturomics. PMID:28706723
Comparative Genomics Reveals High Genomic Diversity in the Genus Photobacterium. PMID:28706512
Draft Genome Sequence of Multidrug-Resistant Cellulosimicrobium sp. Strain KWT-B, Isolated from Feces of Hirundo rustica. PMID:28705986
Draft Genome Sequence of Eggerthia catenaformis Strain MAR1 Isolated from Saliva of Healthy Humans. PMID:28705984
Complete Genome Sequences of Lactococcus lactis subsp. lactis bv. diacetylactis FM03 and Leuconostoc mesenteroides FM06 Isolated from Cheese. PMID:28705980
Draft Genome Sequences of Pseudoalteromonas tetraodonis CSB01KR and Pseudoalteromonas lipolytica CSB02KR, Isolated from the Gut of the Sea Cucumber Apostichopus japonicus. PMID:28705978
Genome Sequence of Oxalobacter formigenes Strain OXCC13. PMID:28705966
Phenotypic and genomic comparison of Mycobacterium aurum and surrogate model species to Mycobacterium tuberculosis: implications for drug discovery. PMID:28705154
Genome sequence of Bradyrhizobium sp. LMTR 3, a diazotrophic symbiont of Lima bean (Phaseolus lunatus). PMID:28702356
Whole genome sequencing and annotation of halophilic Salinicoccus sp. BAB 3246 isolated from the coastal region of Gujarat. PMID:28702355
Complete Genome Sequence of Actinomadura Parvosata Subsp. Kistnae, A Rich Source of Novel Natural Product (Bio-)Chemistry. PMID:28698739
Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts. PMID:28697749
Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy. PMID:28696424
Comparative Genomic Characterization of the Highly Persistent and Potentially Virulent Cronobacter sakazakii ST83, CC65 Strain H322 and Other ST83 Strains. PMID:28694793
Transcriptome profiling analysis reveals metabolic changes across various growth phases in Bacillus pumilus BA06. PMID:28693413
Genomic and transcriptomic analyses of Agrobacterium tumefaciens S33 reveal the molecular mechanism of a novel hybrid nicotine-degrading pathway. PMID:28684751
Complete Genome Sequence of Lactobacillus rhamnosus BFE5264, Isolated from Maasai Traditional Fermented Milk. PMID:28684572
Whole-Genome Shotgun Sequence of Salmonella bongori, First Isolated in Northwestern Italy. PMID:28684570
Draft Genome Sequence of Lactobacillus paracasei DmW181, a Bacterium Isolated from Wild Drosophila. PMID:28684569
Genome Sequence of Oxalobacter formigenes Strain HC-1. PMID:28684568
OXA-244-Producing Escherichia coli Isolates, a Challenge for Clinical Microbiology Laboratories. PMID:28674064
Characterization of Sinorhizobium sp. LM21 Prophages and Virus-Encoded DNA Methyltransferases in the Light of Comparative Genomic Analyses of the Sinorhizobial Virome. PMID:28672885
Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics. PMID:28671965
A genomic investigation of ecological differentiation between free-living and Drosophila-associated bacteria. PMID:28667798
Initial Gut Microbial Composition as a Key Factor Driving Host Response to Antibiotic Treatment, as Exemplified by the Presence or Absence of Commensal Escherichia coli. PMID:28667114
Association of the gut microbiota mobilome with hospital location and birth weight in preterm infants. PMID:28665922
Comparative genome analysis of the Flavobacteriales bacterium strain UJ101, isolated from the gut of Atergatis reticulatus. PMID:28664513
Draft Genome Sequence of Phaeobacter leonis Type Strain 306, an Alphaproteobacterium Isolated from Mediterranean Sea Sediments. PMID:28663303
Multiple Genome Sequences of Exopolysaccharide-Producing, Brewery-Associated Lactobacillus brevis Strains. PMID:28663299
Draft Genome Sequences of Alloscardovia macacae UMA81211 and UMA81212, Isolated from the Feces of a Rhesus Macaque (Macaca mulatta). PMID:28663296
Draft Genome Sequence of a Multidrug-Resistant Serratia marcescens Strain, Isolated from a Patient with Peritoneal Cancer in South Africa. PMID:28663295
Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed. PMID:28662104
Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach. PMID:28659875
Genomic, proteomic and bioinformatic analysis of two temperate phages in Roseobacter clade bacteria isolated from the deep-sea water. PMID:28655355
Phenotypic and genomic survey on organic acid utilization profile of Pseudomonas mendocina strain S5.2, a vineyard soil isolate. PMID:28655216
Draft genome sequence of Massilia sp. KIM isolated from South African grassland biome soils. PMID:28652975
The draft genome sequence of Hymenobacter sp. CRA2 isolated from Nama Karoo shrub land soils from South Africa. PMID:28652974
Unexpected Dominance of Elusive Acidobacteria in Early Industrial Soft Coal Slags. PMID:28642744
Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater. PMID:28640915
The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses. PMID:28634470
Structured Populations of Sulfolobus acidocaldarius with Susceptibility to Mobile Genetic Elements. PMID:28633403
Biotechnological Potential of Cold Adapted Pseudoalteromonas spp. Isolated from 'Deep Sea' Sponges. PMID:28629190
Nonomuraea sp. ATCC 55076 harbours the largest actinomycete chromosome to date and the kistamicin biosynthetic gene cluster. PMID:28626548
Impact of Module-X2 and Carbohydrate Binding Module-3 on the catalytic activity of associated glycoside hydrolases towards plant biomass. PMID:28623337
Complete Genome Sequences of the Endophytic Streptomyces sp. Strains LUP30 and LUP47B, Isolated from Lucerne Plants. PMID:28619813
Draft Genome Sequences of Six Enterococcus faecalis Strains Isolated from Malaysian Clinical and Environmental Origins. PMID:28619812
Genome Sequence of Weissella cibaria DmW_103, Isolated from Wild Drosophila. PMID:28619799
Draft Genome Sequence of Campylobacter jejuni CAM970 and C. coli CAM962, Associated with a Large Outbreak of Foodborne Illness in Fukuoka, Japan, in 2016. PMID:28619796
Genome Sequence of Leuconostoc citreum DmW_111, Isolated from Wild Drosophila. PMID:28619795
Complete Genome Sequence of Edwardsiella ictaluri Isolate RUSVM-1 Recovered from Nile Tilapia (Oreochromis niloticus) in the Western Hemisphere. PMID:28619788
Draft Genome Sequences of Four Pseudomonas aeruginosa Isolates Obtained from Patients with Chronic Obstructive Pulmonary Disease. PMID:28619787
Multi-drug resistant Klebsiella pneumoniae strains circulating in hospital setting: whole-genome sequencing and Bayesian phylogenetic analysis for outbreak investigations. PMID:28615687
Analysis of the Genome and Mobilome of a Dissimilatory Arsenate Reducing Aeromonas sp. O23A Reveals Multiple Mechanisms for Heavy Metal Resistance and Metabolism. PMID:28611742
Genome Mining and Predictive Functional Profiling of Acidophilic Rhizobacterium Pseudomonas fluorescens Pt14. PMID:28611492
A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials. PMID:28604819
Dakarella massiliensis gen. nov., sp. nov., strain ND3T: a new bacterial genus isolated from the female genital tract. PMID:28603641
Long Persistence of a Streptococcus pneumoniae 23F Clone in a Cystic Fibrosis Patient. PMID:28596991
Draft Genome Sequence of Leifsonia sp. Strain NCR5, a Rhizobacterium Isolated from Cadmium-Contaminated Soil. PMID:28596412
Genome Sequence of Paracoccus contaminans LMG 29738T, Isolated from a Water Microcosm. PMID:28596405
Three Draft Genome Sequences of the Bacterial Plant Pathogen Ralstonia solanacearum, Isolated in Georgia. PMID:28596403
Draft Genome Report of Bacillus altitudinis SORB11, Isolated from the Indian Sector of the Southern Ocean. PMID:28596391
Draft Genome of Halomonas lionensis RHS90T, a Stress-Tolerant Gammaproteobacterium Isolated from Mediterranean Sea Sediments. PMID:28596390
Distinct Biological Potential of Streptococcus gordonii and Streptococcus sanguinis Revealed by Comparative Genome Analysis. PMID:28592797
Neisseria genomics: current status and future perspectives. PMID:28591853
A Primer on Infectious Disease Bacterial Genomics. PMID:28590251
Genome analysis of the thermoacidophilic archaeon Acidianus copahuensis focusing on the metabolisms associated to biomining activities. PMID:28587624
Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment. PMID:28585936
Crenothrix are major methane consumers in stratified lakes. PMID:28585934
Isolation and characterisation of the epothilone gene cluster with flanks from high alkalotolerant strain Sorangium cellulosum (So0157-2). PMID:28585173
Pathogenic Characteristics of Staphylococcus aureus Endovascular Infection Isolates from Different Clonal Complexes. PMID:28579985
In silico Prediction, in vitro Antibacterial Spectrum, and Physicochemical Properties of a Putative Bacteriocin Produced by Lactobacillus rhamnosus Strain L156.4. PMID:28579977
φBO1E, a newly discovered lytic bacteriophage targeting carbapenemase-producing Klebsiella pneumoniae of the pandemic Clonal Group 258 clade II lineage. PMID:28572684
Draft Genome Sequence of a Strain of Bacillus intestinalis sp. nov., a New Member of Sporobiota Isolated from the Small Intestine of a Single Patient with Intestinal Cancer. PMID:28572333
Complete Genome of a Panresistant Pseudomonas aeruginosa Strain, Isolated from a Patient with Respiratory Failure in a Canadian Community Hospital. PMID:28572328
Draft Genome Sequence of the Vancomycin-Resistant Clinical Isolate Staphylococcus aureus VRS3b. PMID:28572324
Draft Genome Sequence of Rice Orange Leaf Phytoplasma from Guangdong, China. PMID:28572316
Draft Genome Sequence of Blood Disease Bacterium A2 HR-MARDI, a Pathogen Causing Banana Bacterial Wilt. PMID:28572313
Draft Genome Sequences of Thermophiles Isolated from Yates Shaft, a Deep-Subsurface Environment. PMID:28572310
Draft Genome Sequences of Listeria monocytogenes, Isolated from Fresh Leaf Vegetables in Owerri City, Nigeria. PMID:28572306
Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium. PMID:28567447
Characterization and Genome Analysis of a Nicotine and Nicotinic Acid-Degrading Strain Pseudomonas putida JQ581 Isolated from Marine. PMID:28561771
Streptomyces colonosanans sp. nov., A Novel Actinobacterium Isolated from Malaysia Mangrove Soil Exhibiting Antioxidative Activity and Cytotoxic Potential against Human Colon Cancer Cell Lines. PMID:28559892
Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site. PMID:28546498
Genome Sequence of Brevibacillus laterosporus UNISS 18, a Pathogen of Mosquitoes and Flies. PMID:28546496
Draft Genome Sequence of Streptomyces phaeoluteigriseus DSM41896. PMID:28546480
Complete Genome Sequence of Staphylococcus aureus Bacteriophage pSa-3. PMID:28546473
Insights from the complete genome sequence of Clostridium tyrobutyricum provide a platform for biotechnological and industrial applications. PMID:28536840
A Metagenomic Approach to Cyanobacterial Genomics. PMID:28536564
Epibionts dominate metabolic functional potential of Trichodesmium colonies from the oligotrophic ocean. PMID:28534879
Differences in Gene Expression Profiles between Early and Late Isolates in Monospecies Achromobacter Biofilm. PMID:28534862
Stumbling across the Same Phage: Comparative Genomics of Widespread Temperate Phages Infecting the Fish Pathogen Vibrio anguillarum. PMID:28531104
Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655. PMID:28526842
Fundamental differences in diversity and genomic population structure between Atlantic and Pacific Prochlorococcus. PMID:28524867
wblE2 transcription factor in Streptomyces griseus S4-7 plays an important role in plant protection. PMID:28523731
Draft Genome Sequence of Mycobacterium abscessus Bamboo. PMID:28522728
Draft Genome Sequences of Bacillus cereus E41 and Bacillus anthracis F34 Isolated from Algerian Salt Lakes. PMID:28522726
Draft Genome Sequence of Staphylococcus epidermidis Clinical Strain GOI1153754-03-14 Isolated from an Infected Knee Prosthesis. PMID:28522724
Draft Genome Sequence of the Fish Strain Edwardsiella tarda NCIMB 2034. PMID:28522714
Draft Genome Sequence of the Luminescent Strain Vibrio campbellii LB102, Isolated from a Black Tiger Shrimp (Penaeus monodon) Broodstock Rearing System. PMID:28522707
Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013. PMID:28515790
Acquisition of virulence factors in livestock-associated MRSA: Lysogenic conversion of CC398 strains by virulence gene-containing phages. PMID:28515479
Characterization of prophages of Lactococcus garvieae. PMID:28500301
RpoN (σ54) Is Required for Floc Formation but Not for Extracellular Polysaccharide Biosynthesis in a Floc-Forming Aquincola tertiaricarbonis Strain. PMID:28500044
Genome sequence of Shigella flexneri strain SP1, a diarrheal isolate that encodes an extended-spectrum β-lactamase (ESBL). PMID:28499446
Chromosomal features of Escherichia coli serotype O2:K2, an avian pathogenic E. coli. PMID:28496941
Complete genome sequence of bacteriochlorophyll-synthesizing bacterium Porphyrobacter neustonensis DSM 9434. PMID:28496940
Draft Genome Sequence of Plant Growth-Promoting Endophytic Streptomyces sp. GKU 895 Isolated from the Roots of Sugarcane. PMID:28495785
Draft Genome Sequence of Staphylococcus fleurettii Strain MBTS-1 Isolated from Cucumber. PMID:28495782
Whole-Genome Sequence of Endophytic Plant Growth-Promoting Escherichia coli USML2. PMID:28495774
Complete Genome Sequence of the Bacterium Bacillus circulans Jordan Strain 32352. PMID:28495770
Complete Genome Sequences of 12 Isolates of Listeria monocytogenes Belonging to Serotypes 1/2a, 1/2b, and 4b Obtained from Food Products and Food-Processing Environments in Canada. PMID:28495767
Complete Genome Sequence of Bacteriophage SEN8, a Temperate Phage Isolated from Salmonella enterica subsp. salamae. PMID:28495765
Complete Genome Sequence of a Novel Multidrug-Resistant Klebsiella pneumoniae Phage, vB_Kpn_IME260. PMID:28495757
Genotypic and phenotypic diversity of Lactobacillus rhamnosus clinical isolates, their comparison with strain GG and their recognition by complement system. PMID:28493885
Comparative Analysis of Extended-Spectrum-β-Lactamase CTX-M-65-Producing Salmonella enterica Serovar Infantis Isolates from Humans, Food Animals, and Retail Chickens in the United States. PMID:28483962
Genotypic and phenotypic characterization of multidrug resistant Salmonella Typhimurium and Salmonella Kentucky strains recovered from chicken carcasses. PMID:28481935
Assembly of genomic reads of elite indica rice cultivar onto 2101 reference bacterial genomes for identification of co-sequenced endophytic bacteria. PMID:28480321
Complete Genome Sequence of Dolosigranulum pigrum from a Patient with Interstitial Lung Disease Using Single-Molecule Real-Time Sequencing Technology. PMID:28473398
Draft Genome Sequence of Tetragenococcus halophilus Strain FBL3, a Probiotic Bacterium Isolated from Galchijeot, a Salted Fermented Food, in the Republic of Korea. PMID:28473395
Draft Genome Sequence of Pediococcus pentosaceus Strain FBL2, a Probiotic Bacterium Isolated from Jogaejeot, a Salted Fermented Food, in the Republic of Korea. PMID:28473394
First Whole-Genome Sequences of Two Multidrug-Resistant Acinetobacter baumannii Strains Isolated from a Moroccan Hospital Floor. PMID:28473391
Complete Genome Sequence of Lactobacillus curvatus Strain WiKim38 Isolated from Kimchi. PMID:28473381
Draft Genome Sequence and Assembly of a Lysobacter enzymogenes Strain with Biological Control Activity against Root Knot Nematodes. PMID:28473380
Metagenome-Assembled Genome Sequence of Rhodopseudomonas palustris Strain ELI 1980, Commercialized as a Biostimulant. PMID:28473374
Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics. PMID:28473000
Comparative Genomics and Transcriptional Analysis of Flavobacterium columnare Strain ATCC 49512. PMID:28469601
Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling. PMID:28469381
Comparative Genomics of Host-Symbiont and Free-Living Oceanobacillus Species. PMID:28460092
Comparative Metagenomics of the Polymicrobial Black Band Disease of Corals. PMID:28458657
A comprehensive multi-omics approach uncovers adaptations for growth and survival of Pseudomonas aeruginosa on n-alkanes. PMID:28454561
Draft Genome Sequence of the Uropathogenic Herbaspirillumfrisingense Strain ureolyticus VT-16-41. PMID:28450527
Draft Genome Sequence of Plantibacterflavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site. PMID:28450526
Draft Genome Sequence of the 1,2-Dichloroethane-Utilizing Micrococcus sp. Strain NDB3Y10, Isolated from an Australian Bore Well Producing Coal Seam Gas. PMID:28450520
Complete Genome Sequence of a Paenalcaligenes hominis Strain Isolated from a Paraplegic Patient with Neurogenic Bladder Using Single-Molecule Real-Time Sequencing Technology. PMID:28450518
Draft Genome Sequence of Microbacterium sp. TNHR37B Isolated from a Heated Aquifer Bore Well of the Great Artesian Basin, Australia. PMID:28450517
Draft Genome Sequence of MPKL 26, the Type Strain of the Novel Species Sinomonas mesophila. PMID:28450514
Complete Genome Sequence of Tessaracoccus sp. Strain T2.5-30 Isolated from 139.5 Meters Deep on the Subsurface of the Iberian Pyritic Belt. PMID:28450513
Genome Sequence of "Candidatus Carsonella ruddii" Strain BC, a Nutritional Endosymbiont of Bactericera cockerelli. PMID:28450512
Complete Genome Sequence of the Gamma-Aminobutyric Acid-Producing Strain Streptococcus thermophilus APC151. PMID:28450504
Genome Dynamics of Escherichia coli during Antibiotic Treatment: Transfer, Loss, and Persistence of Genetic Elements In situ of the Infant Gut. PMID:28447026
Population Dynamics of Staphylococcus aureus in Cystic Fibrosis Patients To Determine Transmission Events by Use of Whole-Genome Sequencing. PMID:28446577
Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates. PMID:28446571
The complete 12 Mb genome and transcriptome of Nonomuraea gerenzanensis with new insights into its duplicated "magic" RNA polymerase. PMID:28442708
Turn Up the Heat-Food and Clinical Escherichia coli Isolates Feature Two Transferrable Loci of Heat Resistance. PMID:28439262
Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex. PMID:28439036
Disruption of tetR type regulator adeN by mobile genetic element confers elevated virulence in Acinetobacter baumannii. PMID:28436748
Genome characteristics of the proteorhodopsin-containing marine flavobacterium Polaribacter dokdonensis DSW-5. PMID:28432541
Diversity of Integrative and Conjugative Elements of Streptococcus salivarius and Their Intra- and Interspecies Transfer. PMID:28432093
Genomics Reveals a Unique Clone of Burkholderia cenocepacia Harboring an Actively Excising Novel Genomic Island. PMID:28428775
Whole-Genome Sequence of Corynebacterium pseudotuberculosis PA04, Isolated from the Lymph Node of a Sheep in the Amazon, Brazil. PMID:28428301
Genome Sequence of Staphylococcus saprophyticus DPC5671, a Strain Isolated from Cheddar Cheese. PMID:28428298
Multiple Genome Sequences of Heteropolysaccharide-Forming Acetic Acid Bacteria. PMID:28428295
Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice. PMID:28419279
An in silico pan-genomic probe for the molecular traits behind Lactobacillus ruminis gut autochthony. PMID:28414739
Draft Genome Sequences of Four Yersinia enterocolitica Strains, Isolated from Wild Ungulate Carcasses. PMID:28408689
Draft Whole-Genome Sequence of "Candidatus Liberibacter asiaticus" Strain TX2351 Isolated from Asian Citrus Psyllids in Texas, USA. PMID:28408682
The Genome Sequence of Avibacterium paragallinarum Strain CL Has a Large Repertoire of Insertion Sequence Elements. PMID:28408672
Insights into the Psychrophilic and Sea Ice-Specific Lifestyle of Marinobacter sp. Strain AC-23: a Genomic Approach. PMID:28408670
Draft Genome Sequence of Permafrost Bacterium Nesterenkonia sp. Strain PF2B19, Revealing a Cold Adaptation Strategy and Diverse Biotechnological Potential. PMID:28408669
Genome Sequence of Cobetia sp. Strain MM1IDA2H-1, a Hydrocarbon-Degrading and Biosurfactant-Producing Marine Bacterium. PMID:28408668
Draft Genome Sequence of Roseomonas mucosa Strain AU37, Isolated from a Peripheral Intravenous Catheter. PMID:28408667
Staphylococcus sciuri bacteriophages double-convert for staphylokinase and phospholipase, mediate interspecies plasmid transduction, and package mecA gene. PMID:28406168
Mycobacterium llatzerense, a waterborne Mycobacterium, that resists phagocytosis by Acanthamoeba castellanii. PMID:28393860
Genomic Diversity of Type B3 Bacteriophages of Caulobacter crescentus. PMID:28393265
Characterization and genomic analyses of two newly isolated Morganella phages define distant members among Tevenvirinae and Autographivirinae subfamilies. PMID:28387353
Draft genome sequence of Bacillus oleronius DSM 9356 isolated from the termite Reticulitermes santonensis. PMID:28386530
GAMOLA2, a Comprehensive Software Package for the Annotation and Curation of Draft and Complete Microbial Genomes. PMID:28386247
Genome Sequence of a Toxin-Positive Clostridium difficile Strain Isolated from Murine Feces. PMID:28385835
Unravelling the Complete Genome of Archangium gephyra DSM 2261T and Evolutionary Insights into Myxobacterial Chitinases. PMID:28379546
Genomic and transcriptomic landscape of Escherichia coli BL21(DE3). PMID:28379538
A Locus Encoding Variable Defense Systems against Invading DNA Identified in Streptococcus suis. PMID:28379509
The Bioinformatics Analysis of Comparative Genomics of Mycobacterium tuberculosis Complex (MTBC) Provides Insight into Dissimilarities between Intraspecific Groups Differing in Host Association, Virulence, and Epitope Diversity. PMID:28377903
Draft genome of Bordetella pseudohinzii BH370 isolated from trachea and lung tissues of a laboratory mouse. PMID:28377885
Genome-Guided Insights into the Plant Growth Promotion Capabilities of the Physiologically Versatile Bacillus aryabhattai Strain AB211. PMID:28377746
Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents. PMID:28375213
Genome-centric evaluation of Burkholderia sp. strain SRS-W-2-2016 resistant to high concentrations of uranium and nickel isolated from the Savannah River Site (SRS), USA. PMID:28373958
Emergence of a new Neisseria meningitidis clonal complex 11 lineage 11.2 clade as an effective urogenital pathogen. PMID:28373547
PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive. PMID:28369246
Evolution of substrate specificity in a retained enzyme driven by gene loss. PMID:28362260
Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by Paludisphaera borealis PX4T, Isosphaera pallida IS1BT, Singulisphaera acidiphila DSM 18658T, and Strain SH-PL62. PMID:28360896
Whole-Genome Sequence of Pseudomonas fluorescens EK007-RG4, a Promising Biocontrol Agent against a Broad Range of Bacteria, Including the Fire Blight Bacterium Erwinia amylovora. PMID:28360179
Draft Genome Sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16, Colwellia sp. Strain UCD-KL20, Shewanella sp. Strain UCD-KL12, and Shewanella sp. Strain UCD-KL21, Isolated from Seagrass. PMID:28360178
Draft Genome Sequences of 24 Lactococcus lactis Strains. PMID:28360177
Draft Genome Sequence of Caenibacillus caldisaponilyticus B157T, a Thermophilic and Phospholipase-Producing Bacterium Isolated from Acidulocompost. PMID:28360164
Draft Genome Sequence of Corynebacterium pseudotuberculosis Strain PA06 Isolated from a Subauricular Abscess in an Ovine Host. PMID:28360159
Draft Genome Sequence of Streptococcus caviae Strain Cavy grass 6T, Isolated from Domesticated Guinea Pig Fecal Samples. PMID:28360157
Draft Genome Sequence of Bacillus thuringiensis INTA Fr7-4. PMID:28360155
Complete Genome Sequence of Carbapenem-Resistant Klebsiella pneumoniae Strain 1756, Isolated from a Pus Specimen. PMID:28360152
Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion. PMID:28348829
Chromosome-Encoded Hemolysin, Phospholipase, and Collagenase in Plasmidless Isolates of Photobacterium damselae subsp. damselae Contribute to Virulence for Fish. PMID:28341681
Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus. PMID:28338786
Draft genome sequence of Thermoanaerobacterium sp. strain PSU-2 isolated from thermophilic hydrogen producing reactor. PMID:28337413
First Indian report of IncX3 plasmid carrying blaNDM-7 in Escherichia coli from bloodstream infection: potential for rapid dissemination. PMID:28337342
Genetic Analysis of the IncX4 Plasmids: Implications for a Unique Pattern in the mcr-1 Acquisition. PMID:28336940
Complete Genome Sequences of Pseudomonas fluorescens Bacteriophages Isolated from Freshwater Samples in Omaha, Nebraska. PMID:28336602
Complete Genome Sequence of the Plasmid-Bearing Lactobacillus fermentum Strain SNUV175, a Probiotic for Women's Health Isolated from the Vagina of a Healthy South Korean Woman. PMID:28336593
Draft Genome Sequence of Corynebacterium pseudotuberculosis Strain PA07 Biovar ovis, Isolated from a Sheep Udder in Amazonia. PMID:28336591
Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline Anal Sac. PMID:28336587
Draft Genome Sequence of Tannerella forsythia Clinical Isolate 9610. PMID:28336586
Genome Sequence of Deinococcus marmoris PAMC 26562 Isolated from Antarctic Lichen. PMID:28336585
A molecular phylogenetic framework for Bacillus subtilis using genome sequences and its application to Bacillus subtilis subspecies stecoris strain D7XPN1, an isolate from a commercial food-waste degrading bioreactor. PMID:28330166
Isolation and Characterization of a Shewanella Phage-Host System from the Gut of the Tunicate, Ciona intestinalis. PMID:28327522
Enabling comparative modeling of closely related genomes: example genus Brucella. PMID:28324362
A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data. PMID:28321234
Discovery and Complete Genome Sequence of a Bacteriophage from an Obligate Intracellular Symbiont of a Cellulolytic Protist in the Termite Gut. PMID:28321010
Comparative genomics of Clavibacter michiganensis subspecies, pathogens of important agricultural crops. PMID:28319117
Physiological and transcriptional approaches reveal connection between nitrogen and manganese cycles in Shewanella algae C6G3. PMID:28317859
TfoI produced by Tepidimonas fonticaldi PL17, a moderate thermophilic bacterium, is an isoschizomer of MseI. PMID:28315976
Transcriptomic Analyses Elucidate Adaptive Differences of Closely Related Strains of Pseudomonas aeruginosa in Fuel. PMID:28314727
Complete Genome and Methylome Analysis of Psychrotrophic Bacterial Isolates from Lake Untersee in Antarctica. PMID:28302790
Draft Genome Sequences of 11 Lactococcus lactis subsp. cremoris Strains. PMID:28302789
Genome Sequence of Arcobacter sp. Strain LA11, Isolated from the Abalone Haliotis discus. PMID:28302779
Draft Genome Sequences of Three Closely Related Isolates of the Purple Nonsulfur Bacterium Rhodovulum sulfidophilum. PMID:28302776
Draft Genome Sequence of Bacillus licheniformis VSD4, a Diesel Fuel-Degrading and Plant Growth-Promoting Phyllospheric Bacterium. PMID:28302775
Draft Genome Sequence of a Multidrug-Resistant Strain of Enterococcus faecalis, PM01, Isolated from the Nest of an American Bushtit, Psaltriparius minimus. PMID:28302771
Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites. PMID:28300228
Characterization and complete genome sequence analysis of a novel virulent Siphoviridae phage against Staphylococcus aureus isolated from bovine mastitis in Xinjiang, China. PMID:28299517
Distribution of cfr in Staphylococcus spp. and Escherichia coli Strains from Pig Farms in China and Characterization of a Novel cfr-Carrying F43:A-:B- Plasmid. PMID:28293235
The isolation and characterization of Stenotrophomonas maltophilia T4-like bacteriophage DLP6. PMID:28291834
Comparative genome analyses of mycobacteria give better insights into their evolution. PMID:28291784
Characterization of the Prophage Repertoire of African Salmonella Typhimurium ST313 Reveals High Levels of Spontaneous Induction of Novel Phage BTP1. PMID:28280485
Draft Genome Sequence of a Multidrug-Resistant Nosocomial Serratia marcescens Strain That Persisted in a Hospital in Kemerovo, Russian Federation. PMID:28280035
Complete Genome Sequence of Lactobacillus jensenii Strain SNUV360, a Probiotic for Treatment of Bacterial Vaginosis Isolated from the Vagina of a Healthy Korean Woman. PMID:28280032
Genome Sequences of Two Spore-Forming Bacteria Isolated from the Shore of Mono Lake, California. PMID:28280028
Draft Genome Sequence of Lactobacillus reuteri 121, a Source of α-Glucan and β-Fructan Exopolysaccharides. PMID:28280024
Whole-Genome Shotgun Sequencing of Cephalosporin-Resistant Salmonella enterica Serovar Typhi. PMID:28280021
Draft Genome Sequence of Lactobacillus plantarum MPL16, a Wakame-Utilizing Immunobiotic Strain Isolated from Swine Feces. PMID:28280008
Genome Sequence of Historical Bacillus anthracis Strain Tyrol 4675 Isolated from a Bovine Anthrax Case in Austria. PMID:28280006
Infections caused by carbapenem-resistant Klebsiella pneumoniae with hypermucoviscous phenotype: A case report and literature review. PMID:28276993
A Novel pAA Virulence Plasmid Encoding Toxins and Two Distinct Variants of the Fimbriae of Enteroaggregative Escherichia coli. PMID:28275371
Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism. PMID:28274217
High quality draft genome sequence of an extremely halophilic archaeon Natrinema altunense strain AJ2T. PMID:28265340
Genome Sequence of Desulfurella amilsii Strain TR1 and Comparative Genomics of Desulfurellaceae Family. PMID:28265263
Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota. PMID:28265262
In silico Comparison of 19 Porphyromonas gingivalis Strains in Genomics, Phylogenetics, Phylogenomics and Functional Genomics. PMID:28261563
Ecological and Evolutionary Insights into Xanthomonas citri Pathovar Diversity. PMID:28258140
Whole genome sequence of lactic acid bacterium Pediococcus acidilactici strain S1. PMID:28256390
Genome Sequences of Salmonella enterica subsp. enterica Serovar Infantis Strains from Hungary Representing Two Peak Incidence Periods in Three Decades. PMID:28254986
Draft Genome Sequence of Five Shiga Toxin-Producing Escherichia coli Strains Isolated from Wild Deer in Japan. PMID:28254967
Draft Genome Sequence of the Immunobiotic Strain Lactobacillus jensenii TL2937. PMID:28254966
Annotated Whole-Genome Shotgun Sequence of Multidrug-Resistant Mycobacterium tuberculosis MTB13_M Isolated from Morocco. PMID:28254964
Genomic analysis of a Streptococcus pyogenes strain causing endocarditis in a child. PMID:28239478
Draft Genome Sequence of Rhodococcus erythropolis VSD3, a Diesel Fuel-Degrading and Plant Growth-Promoting Bacterium Isolated from Hedera helix Leaves. PMID:28232452
Draft Genome Sequences of Enterotoxigenic Bacillus cereus Strains Obtained from Powdered Infant Formula. PMID:28232440
Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates. PMID:28232432
Genome Sequence of Klebsiella pneumoniae Bacteriophage PMBT1 Isolated from Raw Sewage. PMID:28232430
Genome Sequence of Megasphaera cerevisiae NSB1, a Bacterium Isolated from a Canning Line and Able To Grow in Beer with High Alcohol Content. PMID:28232423
Development of a Rapid Identification Method for the Differentiation of Enterococcus Species Using a Species-Specific Multiplex PCR Based on Comparative Genomics. PMID:28229213
AidP, a novel N-Acyl homoserine lactonase gene from Antarctic Planococcus sp. PMID:28225085
Transcriptomic responses of the olive fruit fly Bactrocera oleae and its symbiont Candidatus Erwinia dacicola to olive feeding. PMID:28225009
Staphylococcal aureus Enterotoxin C and Enterotoxin-Like L Associated with Post-partum Mastitis. PMID:28223977
Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets. PMID:28223967
Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains. PMID:28223462
Toxin-positive Clostridium difficile latently infect mouse colonies and protect against highly pathogenic C. difficile. PMID:28219893
Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania. PMID:28219321
Antibacterial Activities of Bacteria Isolated from the Marine Sponges Isodictya compressa and Higginsia bidentifera Collected from Algoa Bay, South Africa. PMID:28218694
Interaction of Cutibacterium ( formerly Propionibacterium) acnes with bone cells: a step toward understanding bone and joint infection development. PMID:28218305
The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens. PMID:28217117
Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production. PMID:28211005
Coexistence of blaOXA-48 and Truncated blaNDM-1 on Different Plasmids in a Klebsiella pneumoniae Isolate in China. PMID:28210248
Genome Insight and Comparative Pathogenomic Analysis of Nesterenkonia jeotgali Strain CD08_7 Isolated from Duodenal Mucosa of Celiac Disease Patient. PMID:28210247
Metagenome-Assembled Draft Genome Sequence of a Novel Microbial Stenotrophomonas maltophilia Strain Isolated from Caenorhabditisremanei Tissue. PMID:28209833
Draft Genome Sequence of Edwardsiellapiscicida Strain ACC35.1 Isolated from Diseased Turbot (Scophthalmus maximus) in Europe. PMID:28209828
Complete Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas putida KF715 (NBRC 110667) Isolated from Biphenyl-Contaminated Soil. PMID:28209826
Draft Genome Sequence of Cellulosilyticum sp. I15G10I2, a Novel Bacterium Isolated from a Coal Seam Gas Water Treatment Pond. PMID:28209824
Draft Genome Sequence of Actinomyces glycerinitolerans Strain G10T, Isolated from Sheep Rumen Fluid. PMID:28209819
Complete Genome Sequence of Desulfovibrio piger FI11049. PMID:28209813
Adaptation of the pathogen, Pseudomonas syringae, during experimental evolution on a native vs. alternative host plant. PMID:28207977
Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins. PMID:28205536
Inducible Prophage Mutant of Escherichia coli Can Lyse New Host and the Key Sites of Receptor Recognition Identification. PMID:28203234
qnrE1, a Member of a New Family of Plasmid-Located Quinolone Resistance Genes, Originated from the Chromosome of Enterobacter Species. PMID:28193666
N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes. PMID:28191904
Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea. PMID:28191041
Searching for novel photolyases in UVC-resistant Antarctic bacteria. PMID:28190121
Multitarget Quantitative PCR Improves Detection and Predicts Cultivability of the Pathogen Burkholderia pseudomallei. PMID:28188208
Complete genome analysis of Serratia marcescens RSC-14: A plant growth-promoting bacterium that alleviates cadmium stress in host plants. PMID:28187139
Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities. PMID:28186498
Complete Genome Sequence of Arcobacter sp. Strain LFT 1.7 Isolated from Great Scallop (Pecten maximus) Larvae. PMID:28183771
Complete Genome Sequence of Edwardsiella hoshinae ATCC 35051. PMID:28183769
Draft Genome Sequence of Arthrobacter sp. Strain UCD-GKA (Phylum Actinobacteria). PMID:28183767
De Novo Whole-Genome Sequence of Xylella fastidiosa subsp. multiplex Strain BB01 Isolated from a Blueberry in Georgia, USA. PMID:28183766
Complete Genome Sequence of Ichthyobacterium seriolicida JBKA-6T, Isolated from Yellowtail (Seriola quinqueradiata) Affected by Bacterial Hemolytic Jaundice. PMID:28183761
Complete Genome Sequence of Lactobacillus plantarum CGMCC 8198. PMID:28183756
IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation. PMID:28179509
Metagenomic survey of the taxonomic and functional microbial communities of seawater and sea ice from the Canadian Arctic. PMID:28176868
A novel signal transduction protein: Combination of solute binding and tandem PAS-like sensor domains in one polypeptide chain. PMID:28168783
The complete genome sequence of the yogurt isolate Streptococcus thermophilus ACA-DC 2. PMID:28163827
Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72. PMID:28163826
Draft genome sequence of Lactobacillus plantarum strains E2C2 and E2C5 isolated from human stool culture. PMID:28163824
Predominance and Metabolic Potential of Halanaerobium spp. in Produced Water from Hydraulically Fractured Marcellus Shale Wells. PMID:28159795
Biofilm Formation on Stainless Steel by Streptococcus thermophilus UC8547 in Milk Environments Is Mediated by the Proteinase PrtS. PMID:28159787
Whole-Genome Sequence of the Cheese Isolate Lactobacillus rennini ACA-DC 565. PMID:28153908
Complete Genome Sequence of Flavobacteriales Bacterium Strain UJ101 Isolated from a Xanthid Crab. PMID:28153900
Draft Genome Sequences of Neptuniibacter sp. Strains LFT 1.8 and ATR 1.1. PMID:28153896
Draft Genome Sequence of Plant Growth-Promoting Drought-Tolerant Bacillus sp. Strain CMAA 1363 Isolated from the Brazilian Caatinga Biome. PMID:28153893
First Report on a Cluster of Colistin-Resistant Klebsiella pneumoniae Strains Isolated from a Tertiary Care Center in India: Whole-Genome Shotgun Sequencing. PMID:28153885
Emergence and spread of a new community-genotype methicillin-resistant Staphylococcus aureus clone in Colombia. PMID:28143440
Genome features of moderately halophilic polyhydroxyalkanoate-producing Yangia sp. CCB-MM3. PMID:28138356
Complete Genome Sequence of the Dairy Isolate Lactobacillus acidipiscis ACA-DC 1533. PMID:28126948
Draft Genome Sequence of Nocardioides luteus Strain BAFB, an Alkane-Degrading Bacterium Isolated from JP-7-Polluted Soil. PMID:28126947
Draft Genome Sequence of Weissella confusa MBF8-1, a Glucansucrase- and Bacteriocin-Producing Strain Isolated from a Homemade Soy Product. PMID:28126938
Draft Genome Sequences of Semiconstitutive Red, Dry, and Rough Biofilm-Forming Commensal and Uropathogenic Escherichia coli Isolates. PMID:28126929
Importance of whole genome sequencing for the assessment of outbreaks in diagnostic laboratories: analysis of a case series of invasive Streptococcus pyogenes infections. PMID:28124734
Complete genome sequence of Luteibacter rhizovicinus strain LJ96T, isolated from the rhizosphere of barley (Hordeum vulgare L.) in Denmark. PMID:28123952
Genome Analysis of Clostridium difficile PCR Ribotype 014 Lineage in Australian Pigs and Humans Reveals a Diverse Genetic Repertoire and Signatures of Long-Range Interspecies Transmission. PMID:28123380
Genome sequence of Ochrobactrum anthropi strain SUBG007, a plant pathogen and potential xenobiotic compounds degradation bacterium. PMID:28119820
Novel Temperate Phages of Salmonella enterica subsp. salamae and subsp. diarizonae and Their Activity against Pathogenic S. enterica subsp. enterica Isolates. PMID:28118395
From a Natural Product to Its Biosynthetic Gene Cluster: A Demonstration Using Polyketomycin from Streptomyces diastatochromogenes Tü6028. PMID:28117820
Paenibacillus phocaensis sp. nov., isolated from the gut microbiota of a healthy infant. PMID:28116105
Noncontiguous finished genome sequence and description of Fusobacterium massiliense sp. nov. isolated from human duodenum. PMID:28116104
The Two-Component Monooxygenase MeaXY Initiates the Downstream Pathway of Chloroacetanilide Herbicide Catabolism in Sphingomonads. PMID:28115384
Adaptive Evolution of Extreme Acidophile Sulfobacillus thermosulfidooxidans Potentially Driven by Horizontal Gene Transfer and Gene Loss. PMID:28115381
Chaperone-Usher Pili Loci of Colonization Factor-Negative Human Enterotoxigenic Escherichia coli. PMID:28111618
Mosaic structure of Mycobacterium bovis BCG genomes as a representation of phage sequences' mobility. PMID:28105923
Glimpse into the Genomes of Rice Endophytic Bacteria: Diversity and Distribution of Firmicutes. PMID:28105024
Draft Genome Sequences of Three Aeromonas hydrophila Isolates from Catfish and Tilapia. PMID:28104665
Complete Genome Sequences of Three Cupriavidus Strains Isolated from Various Malaysian Environments. PMID:28104662
Draft Genome Sequence of Hypervirulent and Vaccine Candidate Streptococcus suis Strain SC19. PMID:28104658
Draft Genome Sequences of Pandrug-Resistant Serratia marcescens Clinical Isolates Harboring blaNDM-1. PMID:28104656
Complete Genome Sequence of a Potential Novel Bacillus sp. Strain, FJAT-18017, Isolated from a Potato Field. PMID:28104649
Draft Genome Sequence of a Chitinophaga Strain Isolated from a Lignocellulose Biomass-Degrading Consortium. PMID:28104646
Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection. PMID:28103794
mcr-1-Harboring Salmonella enterica Serovar Typhimurium Sequence Type 34 in Pigs, China. PMID:28098547
Novel "Superspreader" Bacteriophages Promote Horizontal Gene Transfer by Transformation. PMID:28096488
Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts. PMID:28088165
Polysaccharide Degradation Capability of Actinomycetales Soil Isolates from a Semiarid Grassland of the Colorado Plateau. PMID:28087533
Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models. PMID:28085902
Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida. PMID:28082966
Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genus Acidithiobacillus: Functional Inferences and Use As Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation. PMID:28082953
Draft Genome Sequence of JVAP01T, the Type Strain of the Novel Species Acinetobacter dijkshoorniae. PMID:28082506
Draft Genome Sequence of Pseudomonas aeruginosa Strain Hex1T Isolated from Soils Contaminated with Used Lubricating Oil in Argentina. PMID:28082504
Complete Genome Sequence of Streptococcus iniae UEL-Si1, Isolated in Diseased Nile Tilapia (Oreochromis niloticus) from Northern Paraná, Southern Brazil. PMID:28082497
Whole-Genome Sequences of Mycobacterium tuberculosis TB282 and TB284, a Widespread and a Unique Strain, Respectively, Identified in a Previous Study of Tuberculosis Transmission in Central Los Angeles, California, USA. PMID:28082486
Complete genome sequence of Pseudomonas brassicacearum strain L13-6-12, a biological control agent from the rhizosphere of potato. PMID:28078051
Burkholderia contaminans Biofilm Regulating Operon and Its Distribution in Bacterial Genomes. PMID:28070515
Metabolic phenotype of clinical and environmental Mycobacterium avium subsp. hominissuis isolates. PMID:28070460
Comparative Genomic Analysis of Two Serotype 1/2b Listeria monocytogenes Isolates from Analogous Environmental Niches Demonstrates the Influence of Hypervariable Hotspots in Defining Pathogenesis. PMID:28066772
Comparative Genomics of the Listeria monocytogenes ST204 Subgroup. PMID:28066377
The Complete Genome Sequence of Hyperthermophile Dictyoglomus turgidum DSM 6724™ Reveals a Specialized Carbohydrate Fermentor. PMID:28066333
The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions. PMID:28061804
Efficient screening of potential cellulases and hemicellulases produced by Bosea sp. FBZP-16 using the combination of enzyme assays and genome analysis. PMID:28058637
Whole-Genome Sequences and Classification of Streptococcus agalactiae Strains Isolated from Laboratory-Reared Long-Evans Rats (Rattus norvegicus). PMID:28057750
Rubeoparvulum massiliense gen. nov., sp. nov., a new bacterial genus isolated from the human gut of a Senegalese infant with severe acute malnutrition. PMID:28053703
Noncontiguous finished genome sequence and description of Streptococcus timonensis sp. nov. isolated from the human stomach. PMID:28050252
Draft genome sequence of alcohol-tolerant bacteria Pediococcus acidilactici strain K3. PMID:28043774
Genome Report: Identification and Validation of Antigenic Proteins from Pajaroellobacter abortibovis Using De Novo Genome Sequence Assembly and Reverse Vaccinology. PMID:28040777
Draft Whole-Genome Sequence of the Alkaliphilic Alishewanella aestuarii Strain HH-ZS, Isolated from Historical Lime Kiln Waste-Contaminated Soil. PMID:28034857
Complete Genome Sequence of Rothia aeria Type Strain JCM 11412, Isolated from Air in the Russian Space Laboratory Mir. PMID:28034856
Genome Sequence of Actinomyces naeslundii Strain ATCC 27039, Isolated from an Abdominal Wound Abscess. PMID:28034855
Draft Genome Sequences of Biosafety Level 2 Opportunistic Pathogens Isolated from the Environmental Surfaces of the International Space Station. PMID:28034853
Transcriptome Analysis of the Intracellular Facultative Pathogen Piscirickettsia salmonis: Expression of Putative Groups of Genes Associated with Virulence and Iron Metabolism. PMID:28033422
Genome sequencing of three bacteria associated to black band disease from a Colombian reef-building coral. PMID:28018855
Genome Sequence of the Soviet/Russian Bacillus anthracis Vaccine Strain 55-VNIIVViM. PMID:28007853
Whole-Genome Sequences of 26 Vibrio cholerae Isolates. PMID:28007852
Draft Genome Sequence of the Nonpathogenic, Thermotolerant, and Exopolysaccharide-Producing Bacillus anthracis Strain PFAB2 from Panifala Hot Water Spring in West Bengal, India. PMID:28007848
Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria. PMID:27999625
Comparative genomics analyses revealed two virulent Listeria monocytogenes strains isolated from ready-to-eat food. PMID:27999619
Biological Potential of Chitinolytic Marine Bacteria. PMID:27999269
Examination of Mycobacterium avium subspecies paratuberculosis mixed genotype infections in dairy animals using a whole genome sequencing approach. PMID:27994984
Community metabolic modeling approaches to understanding the gut microbiome: Bridging biochemistry and ecology. PMID:27989793
Agarolytic bacterium Persicobacter sp. CCB-QB2 exhibited a diauxic growth involving galactose utilization pathway. PMID:27987272
Genome Sequence of "Anthococcus," a Novel Genus of the Family Streptococcaceae Isolated from Flowers. PMID:27979953
Genome Sequences of Multidrug-Resistant Salmonella enterica subsp. enterica Serovar Infantis Strains from Broiler Chicks in Hungary. PMID:27979950
Genome Sequence of Rheinheimera salexigens sp. nov. Isolated from a Fishing Hook off O'ahu, Hawai'i. PMID:27979942
Draft Genome Sequence of Enterococcus faecalis Strain UCD-PD3. PMID:27979940
Draft Genome Sequence of Bacillus subtilis Ia1a, a New Strain for Poly-γ-Glutamic Acid and Exopolysaccharide Production. PMID:27979935
Acanthamoeba containing endosymbiotic chlamydia isolated from hospital environments and its potential role in inflammatory exacerbation. PMID:27978822
Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections. PMID:27977735
Microbial Community Composition Impacts Pathogen Iron Availability during Polymicrobial Infection. PMID:27973608
Chromosome-Encoded Broad-Spectrum Ambler Class A β-Lactamase RUB-1 from Serratia rubidaea. PMID:27956418
Genome sequencing and annotation of Aeromonas veronii strain Ae52, a multidrug-resistant isolate from septicaemic gold fish (Carassius auratus) in Sri Lanka. PMID:27942459
Plasmid Complement of Lactococcus lactis NCDO712 Reveals a Novel Pilus Gene Cluster. PMID:27941999
MRSA Isolates from United States Hospitals Carry dfrG and dfrK Resistance Genes and Succumb to Propargyl-Linked Antifolates. PMID:27939900
Genome Sequence of Pseudomonas citronellolis SJTE-3, an Estrogen- and Polycyclic Aromatic Hydrocarbon-Degrading Bacterium. PMID:27932659
Complete Genome Sequence of the Nonylphenol-Degrading Bacterium Sphingobium cloacae JCM 10874T. PMID:27932652
Draft Genome Sequence of a Novel Marinobacter sp. Strain from Honolulu Harbor, Hawai'i. PMID:27932650
Complete Genome Sequences of the Endophytic Streptomyces Strains EN16, EN23, and EN27, Isolated from Wheat Plants. PMID:27932645
Complete Genome Sequence of Bacteriophage MA12, Which Infects both Campylobacter jejuni and Salmonella enterica Serovar Enteritidis. PMID:27932636
Genome Sequence of Bacteriophage GG32, Which Can Infect both Salmonella enterica Serovar Typhimurium and Escherichia coli O157:H7. PMID:27932635
Draft genome sequence of phenol degrading Acinetobacter sp. Strain V2, isolated from oil contaminated soil. PMID:27932082
Next-generation systematics: An innovative approach to resolve the structure of complex prokaryotic taxa. PMID:27924912
Genome sequence of a commensal bacterium, Enterococcus faecalis CBA7120, isolated from a Korean fecal sample. PMID:27924153
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data. PMID:27922098
Genome analysis of Campylobacter concisus strains from patients with inflammatory bowel disease and gastroenteritis provides new insights into pathogenicity. PMID:27910936
Carbohydrate metabolism in Oenococcus oeni: a genomic insight. PMID:27905883
Complete genome sequence of the biofilm-forming Microbacterium sp. strain BH-3-3-3, isolated from conventional field-grown lettuce (Lactuca sativa) in Norway. PMID:27900265
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. PMID:27899627
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes. PMID:27899624
Comparative Functional Genomic Analysis of Two Vibrio Phages Reveals Complex Metabolic Interactions with the Host Cell. PMID:27895630
Detection of a cfr(B) Variant in German Enterococcus faecium Clinical Isolates and the Impact on Linezolid Resistance in Enterococcus spp. PMID:27893790
SXT/R391 integrative and conjugative elements in Proteus species reveal abundant genetic diversity and multidrug resistance. PMID:27892525
Complete genome of Vibrio parahaemolyticus FORC014 isolated from the toothfish. PMID:27891183
Whole-genome sequencing and comparative genomic analysis of Escherichia coli O91 strains isolated from symptomatic and asymptomatic human carriers. PMID:27891181
Complete Genome Sequence of Clostridium estertheticum DSM 8809, a Microbe Identified in Spoiled Vacuum Packed Beef. PMID:27891116
Draft Genome Sequence of Magnetovibrio blakemorei Strain MV-1, a Marine Vibrioid Magnetotactic Bacterium. PMID:27881550
Draft Genome Sequence of Lactobacillus plantarum TL2766, a Strain with the Ability To Ferment Wakame. PMID:27881548
Draft Genome Sequences of Two "Haemophilus quentini" Isolates Recovered from Two Different Patients' Blood Cultures. PMID:27881546
Draft Genome Sequence of Lysinibacillus xylanilyticus SR-86. PMID:27881544
Genome Sequence of Salegentibacter salarius KCTC 12974, Isolated from a Marine Solar Saltern of the Yellow Sea in South Korea. PMID:27881540
Coexistence of Fosfomycin and Colistin Resistance in Klebsiella pneumoniae: Whole-Genome Shotgun Sequencing. PMID:27881539
Complete Genome Sequence of Edwardsiella piscicida Isolate S11-285 Recovered from Channel Catfish (Ictalurus punctatus) in Mississippi, USA. PMID:27881536
Analysis of Germination Capacity and Germinant Receptor (Sub)clusters of Genome-Sequenced Bacillus cereus Environmental Isolates and Model Strains. PMID:27881417
Whole-Genome Relationships among Francisella Bacteria of Diverse Origins Define New Species and Provide Specific Regions for Detection. PMID:27881415
Comparative genomics of European avian pathogenic E. Coli (APEC). PMID:27875980
Complete genome sequence of the biofilm-forming Curtobacterium sp. strain BH-2-1-1, isolated from lettuce (Lactuca sativa) originating from a conventional field in Norway. PMID:27872813
Comparative Genomics Revealed Multiple Helicobacter pylori Genes Associated with Biofilm Formation In Vitro. PMID:27870886
Genome Sequence of Formosa haliotis Strain MA1, a Brown Alga-Degrading Bacterium Isolated from the Gut of Abalone Haliotis gigantea. PMID:27856598
Genome Sequences of Two Multidrug-Resistant Proteus mirabilis Strains Harboring CTX-M-65 Isolated from Malaysia. PMID:27856593
Draft Genome Sequence for a Urinary Isolate of Nosocomiicoccus ampullae. PMID:27856579
Chromosomal Amplification of the blaOXA-58 Carbapenemase Gene in a Proteus mirabilis Clinical Isolate. PMID:27855079
Whole-Genome Sequence Analysis of Bombella intestini LMG 28161T, a Novel Acetic Acid Bacterium Isolated from the Crop of a Red-Tailed Bumble Bee, Bombus lapidarius. PMID:27851750
A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules. PMID:27845364
Finished Genome Sequences of Xanthomonas fragariae, the Cause of Bacterial Angular Leaf Spot of Strawberry. PMID:27834715
Draft Genome Sequence of Cupriavidus UYMMa02A, a Novel Beta-Rhizobium Species. PMID:27834710
Draft Genome Sequence for the Type Strain Vulcanibacillus modesticaldus BR, a Strictly Anaerobic, Moderately Thermophilic, and Nitrate-Reducing Bacterium Isolated from Deep-Sea Hydrothermal Vents of the Mid-Atlantic Ridge. PMID:27834704
Draft Genome Sequence of the Type Strain Desulfuribacillus alkaliarsenatis AHT28, an Obligately Anaerobic, Sulfidogenic Bacterium Isolated from Russian Soda Lake Sediments. PMID:27834702
Draft Genome Sequence of Microcystis aeruginosa NIES-98, a Non-Microcystin-Producing Cyanobacterium from Lake Kasumigaura, Japan. PMID:27834696
Genome Sequences of Malonate-Positive Cronobacter sakazakii Serogroup O:2, Sequence Type 64 Strains CDC 1121-73 and GK1025, Isolated from Human Bronchial Wash and a Powdered Infant Formula Manufacturing Plant. PMID:27834695
Small Regulatory RNAs of Rickettsia conorii. PMID:27834404
Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark. PMID:27833718
Genome sequencing, assembly, annotation and analysis of Staphylococcus xylosus strain DMB3-Bh1 reveals genes responsible for pathogenicity. PMID:27833663
Genomic Comparison of Agrobacterium pusense Strains Isolated from Bean Nodules. PMID:27833604
Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes. PMID:27822530
Differential Functional Constraints Cause Strain-Level Endemism in Polynucleobacter Populations. PMID:27822527
Genome sequence of Bradyrhizobium embrapense strain CNPSo 2833T, isolated from a root nodule of Desmodium heterocarpon. PMID:27818093
An Inducible Operon Is Involved in Inulin Utilization in Lactobacillus plantarum Strains, as Revealed by Comparative Proteogenomics and Metabolic Profiling. PMID:27815279
Genome Dynamics and Molecular Infection Epidemiology of Multidrug-Resistant Helicobacter pullorum Isolates Obtained from Broiler and Free-Range Chickens in India. PMID:27815276
Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools. PMID:27814683
Draft Genome Sequence of Piscirickettsia litoralis, Isolated from Seawater. PMID:27811116
Metagenome-Assembled Genome Sequence of Pseudomonas stutzeri Strain CO183 Isolated from a Coalbed Methane Well. PMID:27811112
Whole-Genome Shotgun Sequencing of the First Observation of Neisseria meningitidis Sequence Type 6928 in India. PMID:27811110
Draft Genome Sequence of a Novel Luteimonas sp. Strain from Coral Mucus, Hawai'i. PMID:27811107
Genome Sequence of Paraburkholderia nodosa Strain CNPSo 1341, a N2-Fixing Symbiont of the Promiscuous Legume Phaseolus vulgaris. PMID:27811087
Phylogenetic and comparative genomics of the family Leptotrichiaceae and introduction of a novel fingerprinting MLVA for Streptobacillus moniliformis. PMID:27809782
Classification of a Hypervirulent Aeromonas hydrophila Pathotype Responsible for Epidemic Outbreaks in Warm-Water Fishes. PMID:27803692
Quantum changes in Helicobacter pylori gene expression accompany host-adaptation. PMID:27803027
Vibrio vulnificus Type 6 Secretion System 1 Contains Anti-Bacterial Properties. PMID:27798649
Genomic analysis of the multi-drug-resistant clinical isolate Myroides odoratimimus PR63039. PMID:27796642
Comparative genomics of Paracoccus sp. SM22M-07 isolated from coral mucus: insights into bacteria-host interactions. PMID:27796486
Evolutionary study of Yersinia genomes deciphers emergence of human pathogenic species. PMID:27796355
Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. PMID:27795388
Draft Genome Sequence of Vibrio (Listonella) anguillarum ATCC 14181. PMID:27795288
Genomic Evolution of Two Acinetobacter baumannii Clinical Strains from ST-2 Clones Isolated in 2000 and 2010 (ST-2_clon_2000 and ST-2_clon_2010). PMID:27795287
Draft Genome Sequence of Terasakiispira papahanaumokuakeensis PH27AT, a Spiral Bacterium from the Northwestern Hawaiian Islands. PMID:27795280
Draft Genome Sequence of Rhodococcus erythropolis NSX2, an Actinobacterium Isolated from a Cadmium-Contaminated Environment. PMID:27795276
Draft Genome Sequences of Two Geobacillus Species Strains, Isolated from Oil Wells and Surface Soil above Oil Pools. PMID:27795271
Whole-Genome Sequence of Pseudomonas graminis Strain UASWS1507, a Potential Biological Control Agent and Biofertilizer Isolated in Switzerland. PMID:27795260
Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1016, a Potential Symbiotic Biofertilizer for Agriculture. PMID:27795259
Draft Genome Sequence of Extremely Drug-Resistant Pseudomonas aeruginosa (ST357) Strain CMC_VB_PA_B22862 Isolated from a Community-Acquired Bloodstream Infection. PMID:27795257
Multiple Genome Sequences of Important Beer-Spoiling Lactic Acid Bacteria. PMID:27795248
Draft Genome Sequence of Enterobacter ludwigii NCR3, a Heavy Metal-Resistant Rhizobacterium. PMID:27795247
Draft Genome Sequence of Ureolytic Environmental Isolate Bacillus galactosidilyticus PL133. PMID:27795245
Draft Genome Sequence of Ureolytic Environmental Isolate Staphylococcus sp. NA309. PMID:27795244
Draft Genome Sequences of Two Novel Pseudomonas Strains Exhibiting Differential Hypersensitivity Reactions on Tobacco and Corn Seedlings. PMID:27795242
Draft Genome Sequence of a Novel Mucilaginibacter Member Isolated from Brazilian Amazon Soil. PMID:27795240
Reconstruction of a Nearly Complete Pseudomonas Draft Genome Sequence from a Coalbed Methane-Produced Water Metagenome. PMID:27795237
Draft Genome Sequence of Escherichia coli 26R 793, a Plasmid-Free Recipient Strain Commonly Used in Conjugation Assays. PMID:27795232
Genome Sequence of the Multiple-Protease-Producing Strain Geobacillus thermoleovorans N7, a Thermophilic Bacterium Isolated from Paniphala Hot Spring, West Bengal, India. PMID:27789644
Draft Genome Sequences of Burkholderia contaminans FFI-28, a Strain Isolated from a Contaminated Pharmaceutical Solution. PMID:27789640
Draft Genome Sequence of the Xanthan Producer Xanthomonas campestris LMG 8031. PMID:27789631
Whole genome sequencing uncovers a novel IND-16 metallo-β-lactamase from an extensively drug-resistant Chryseobacterium indologenes strain J31. PMID:27785154
Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense. PMID:27782805
Genome sequences and annotation of two urinary isolates of E. coli. PMID:27777649
Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. PMID:27775707
A genomic view of food-related and probiotic Enterococcus strains. PMID:27773878
Isolation and plasmid characterization of carbapenemase (IMP-4) producing Salmonella enterica Typhimurium from cats. PMID:27767038
Whole-genome sequence of Bacillus solimangrovi GH 2-4T, isolated from mangrove soil. PMID:27752470
Thermophilic archaea activate butane via alkyl-coenzyme M formation. PMID:27749816
A Clostridium difficile Cell Wall Glycopolymer Locus Influences Bacterial Shape, Polysaccharide Production and Virulence. PMID:27741317
Draft Genome Sequences of Four Salmonella enterica Strains Isolated from Turkey-Associated Sources. PMID:27738037
Draft Genome Sequence of Gordonia sp. Strain UCD-TK1 (Phylum Actinobacteria). PMID:27738036
Draft Genome Sequence of Tenacibaculum soleae UCD-KL19. PMID:27738035
Cobalamin production by Lactobacillus coryniformis: biochemical identification of the synthetized corrinoid and genomic analysis of the biosynthetic cluster. PMID:27737643
Geographic Impact on Genomic Divergence as Revealed by Comparison of Nine Citromicrobial Genomes. PMID:27736788
Virulence, Antimicrobial Resistance Properties and Phylogenetic Background of Non-H7 Enteropathogenic Escherichia coli O157. PMID:27733849
Multilevel selection of bcrABDR-mediated bacitracin resistance in Enterococcus faecalis from chicken farms. PMID:27731342
Whole-genome sequence of Dermabacter vaginalis AD1-86T, isolated from vaginal fluid of Korean woman. PMID:27722089
Pseudomonas fluorescens F113 Can Produce a Second Flagellar Apparatus, Which Is Important for Plant Root Colonization. PMID:27713729
A novel proposal of a simplified bacterial gene set and the neo-construction of a general minimized metabolic network. PMID:27713529
Genome Sequence of Vibrio parahaemolyticus VP103 Strain Isolated from Shrimp in Malaysia. PMID:27708636
Divergent Isoprenoid Biosynthesis Pathways in Staphylococcus Species Constitute a Drug Target for Treating Infections in Companion Animals. PMID:27704053
Biodiversity of bacteriophages: morphological and biological properties of a large group of phages isolated from urban sewage. PMID:27698408
Draft Genome Sequence of Mangrove-Derived Streptomyces sp. MUSC 125 with Antioxidant Potential. PMID:27695452
Production of the Bioactive Compounds Violacein and Indolmycin Is Conditional in a maeA Mutant of Pseudoalteromonas luteoviolacea S4054 Lacking the Malic Enzyme. PMID:27695447
Functional mining of transporters using synthetic selections. PMID:27694800
Complete Genome Sequence of the Endophytic Biocontrol Strain Bacillus velezensis CC09. PMID:27688342
Draft Genome Sequence of Bacillus cereus LCR12, a Plant Growth-Promoting Rhizobacterium Isolated from a Heavy Metal-Contaminated Environment. PMID:27688340
Complete Genome Sequence of Staphylococcus carnosus LTH 3730. PMID:27688338
Complete Genome Sequence of Enterococcus faecalis Strain W11 Isolated from an Algal Food Product. PMID:27688337
Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7T. PMID:27688325
Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae MB373, an Effective Bioremediator. PMID:27688323
Bacteroides intestinalis DSM 17393, a member of the human colonic microbiome, upregulates multiple endoxylanases during growth on xylan. PMID:27681607
Comparative Genome Analysis of the Daptomycin-Resistant Streptococcus anginosus Strain J4206 Associated with Breakthrough Bacteremia. PMID:27678123
Whole Genome Sequence Analysis of an Alachlor and Endosulfan Degrading Micrococcus sp. strain 2385 Isolated from Ochlockonee River, Florida. PMID:27672405
Transcriptomic analysis of the highly efficient oil-degrading bacterium Acinetobacter venetianus RAG-1 reveals genes important in dodecane uptake and utilization. PMID:27664055
Draft Genome Sequence of a Diazotrophic, Plant Growth-Promoting Rhizobacterium of the Pseudomonas syringae Complex. PMID:27660794
Genome Sequence of the Arsenic-Resistant Haladaptatus sp. Strain R4 Isolated from Ramnagar, West Bengal, India. PMID:27660791
Draft Genome Sequence of Marine Sponge Symbiont Pseudoalteromonas luteoviolacea IPB1, Isolated from Hilo, Hawaii. PMID:27660784
Draft Genome Sequence of a Cardiobacterium hominis Strain Isolated from Blood Cultures of a Patient with Infective Endocarditis. PMID:27660783
Draft Genome Sequence of Clostridium sp. Strain W14A Isolated from a Cellulose-Degrading Biofilm in a Landfill Leachate Microcosm. PMID:27660778
Genome Sequence of the Oral Probiotic Streptococcus salivarius JF. PMID:27660775
Draft Genome Sequence of Pseudomonas sp. LAB-08 Isolated from Trichloroethene-Contaminated Aquifer Soil. PMID:27660772
Genome sequence of Candidatus Arsenophonus lipopteni, the exclusive symbiont of a blood sucking fly Lipoptena cervi (Diptera: Hippoboscidae). PMID:27660670
Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios. PMID:27660622
Genome Sequence of Vibrio parahaemolyticus VP152 Strain Isolated from Penaeus indicus in Malaysia. PMID:27656174
Biochemical and genome sequence analyses of Megasphaera sp. strain DISK18 from dental plaque of a healthy individual reveals commensal lifestyle. PMID:27651180
Draft Genome Sequence of Enterococcus mundtii QAUEM2808, Isolated from Dahi, a Fermented Milk Product. PMID:27635009
Draft Genome Sequences of Shewanella sp. Strain UCD-FRSP16_17 and Nine Vibrio Strains Isolated from Abalone Feces. PMID:27635000
Complete Genome Sequences of 12 Species of Stable Defined Moderately Diverse Mouse Microbiota 2. PMID:27634994
Complete Genome Sequence of a New Enterococcus faecalis Bacteriophage, vB_EfaS_IME197. PMID:27634987
Novel Methyltransferase Recognition Motif Identified in Chania multitudinisentens RB-25(T) gen. nov., sp. nov. PMID:27630623
The First Siphoviridae Family Bacteriophages Infecting Bordetella bronchiseptica Isolated from Environment. PMID:27628741
The Complete Genome Sequence of the Nicotine-Degrading Bacterium Shinella sp. HZN7. PMID:27625640
Functional Annotations of Paralogs: A Blessing and a Curse. PMID:27618105
Draft Genome Sequence of Two Strains of Xanthomonas arboricola Isolated from Prunus persica Which Are Dissimilar to Strains That Cause Bacterial Spot Disease on Prunus spp. PMID:27609931
Genome Sequence of a Clinical Strain of Acinetobacter baumannii Belonging to the ST79/PFGE-HUI-1 Clone Lacking the AdeABC (Resistance-Nodulation-Cell Division-Type) Efflux Pump. PMID:27609928
Draft Genome Sequences of 15 Isolates of Listeria monocytogenes Serotype 1/2a, Subgroup ST204. PMID:27609916
Complete Genome Sequence of Clostridium septicum Strain CSUR P1044, Isolated from the Human Gut Microbiota. PMID:27609912
Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules. PMID:27601031
Characterization of Two Multidrug-Resistant IncA/C Plasmids from the 1960s by Using the MinION Sequencer Device. PMID:27600047
Phylogeography, Salinity Adaptations and Metabolic Potential of the Candidate Division KB1 Bacteria Based on a Partial Single Cell Genome. PMID:27597842
Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes. PMID:27595750
Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data. PMID:27595107
MMinte: an application for predicting metabolic interactions among the microbial species in a community. PMID:27590448
Genome-based insights into the resistome and mobilome of multidrug-resistant Aeromonas sp. ARM81 isolated from wastewater. PMID:27590015
Genome Sequence of Porphyrobacter dokdonensis DSW-74T, Isolated from Seawater off Dokdo in the East Sea (Sea of Korea). PMID:27587820
Genome Sequences of Three Spore-Forming Bacteria Isolated from the Feces of Organically Raised Chickens. PMID:27587809
Genome Sequence of Avian Escherichia coli Strain IHIT25637, an Extraintestinal Pathogenic E. coli Strain of ST131 Encoding Colistin Resistance Determinant MCR-1. PMID:27587807
Molecular Evolution of the Yersinia Major Outer Membrane Protein C (OmpC). PMID:27578962
Molecular Basis for Lytic Bacteriophage Resistance in Enterococci. PMID:27578757
Expression, purification and characterization of an endoglucanase from Serratia proteamaculans CDBB-1961, isolated from the gut of Dendroctonus adjunctus (Coleoptera: Scolytinae). PMID:27576896
Global phylogeography and evolutionary history of Shigella dysenteriae type 1. PMID:27572446
IncHI2 Plasmids Are the Key Vectors Responsible for oqxAB Transmission among Salmonella Species. PMID:27572409
Genome and Plasmid Analysis of blaIMP-4-Carrying Citrobacter freundii B38. PMID:27572407
Vibrio natriegens as a fast-growing host for molecular biology. PMID:27571549
Draft genome sequence of pathogenic bacteria Vibrio parahaemolyticus strain Ba94C2, associated with acute hepatopancreatic necrosis disease isolate from South America. PMID:27570736
Draft Genome Sequence of Neisseria gonorrhoeae Strain NG_869 with Penicillin, Tetracycline and Ciprofloxacin Resistance Determinants Isolated from Malaysia. PMID:27570316
Draft Genome Sequence of Cellulolytic and Xylanolytic Cellulomonas sp. Strain B6 Isolated from Subtropical Forest Soil. PMID:27563050
Draft Genome Sequence of the Aureocin A53-Producing Strain Staphylococcus aureus A53. PMID:27563042
Multiple Genome Sequences of the Important Beer-Spoiling Species Lactobacillus backii. PMID:27563041
Complete Genome Sequence of a Cylindrospermopsin-Producing Cyanobacterium, Cylindrospermopsis raciborskii CS505, Containing a Circular Chromosome and a Single Extrachromosomal Element. PMID:27563040
Draft Genome Sequence of Lactobacillus reuteri Strain CRL 1098, an Interesting Candidate for Functional Food Development. PMID:27563038
Complete Genome Sequence of Pseudomonas aeruginosa Phage AAT-1. PMID:27563032
Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria. PMID:27559430
Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216(T). PMID:27559429
Coinfection and Emergence of Rifamycin Resistance during a Recurrent Clostridium difficile Infection. PMID:27558181
High quality draft genome sequence of the type strain of Pseudomonas lutea OK2(T), a phosphate-solubilizing rhizospheric bacterium. PMID:27555890
A Bayesian Framework for the Classification of Microbial Gene Activity States. PMID:27555837
The Genetic Analysis of an Acinetobacter johnsonii Clinical Strain Evidenced the Presence of Horizontal Genetic Transfer. PMID:27548264
Comparative Genomics of the Extreme Acidophile Acidithiobacillus thiooxidans Reveals Intraspecific Divergence and Niche Adaptation. PMID:27548157
Genomes of Candidatus Wolbachia bourtzisii wDacA and Candidatus Wolbachia pipientis wDacB from the Cochineal Insect Dactylopius coccus (Hemiptera: Dactylopiidae). PMID:27543297
Comparative Genome Analysis of Fusobacterium nucleatum. PMID:27540086
Draft Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum copahuensis Strain CINDEFI1 Isolated from the Geothermal Copahue System, Neuquén, Argentina. PMID:27540078
Draft Genome Sequence of an Industrially Important Bacillus sp. from Mandarmani Coastal Waters in Midnapur District, West Bengal, India. PMID:27540077
Draft Genome Sequence of Aeromonas sp. Strain EERV15. PMID:27540061
Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos. PMID:27540060
Draft Genome Sequence of Aeromonas dhakensis Strain F2S2-1, Isolated from the Skin Surface of an Indian Oil Sardine (Sardinella longiceps). PMID:27540048
Nematicidal spore-forming Bacilli share similar virulence factors and mechanisms. PMID:27539267
How Clonal Is Clonal? Genome Plasticity across Multicellular Segments of a "Candidatus Marithrix sp." Filament from Sulfidic, Briny Seafloor Sediments in the Gulf of Mexico. PMID:27536274
Genetic Characterization and Comparative Genome Analysis of Brucella melitensis Isolates from India. PMID:27525259
Genome Sequence of Corynebacterium pseudotuberculosis Strain PA02 Isolated from an Ovine Host in the Amazon. PMID:27516524
Draft Genome Sequence of Colistin-Resistant Acinetobacter baumannii Strain VB22595 Isolated from a Central Line-Associated Bloodstream Infection. PMID:27516521
Draft Genome Sequences of Citrobacter freundii Strains CF04 and A41 Isolated from Moribund, Septicemic Giant Gourami (Osphronemus goramy) in Sri Lanka. PMID:27516512
Draft Genome Sequences of Four Thermophilic Spore Formers Isolated from a Dairy-Processing Environment. PMID:27516503
Draft Genome Sequence of Carotenoid Producing Yellow Pigmented Planococcus maritimus MKU009. PMID:27512519
Draft genome sequence of Staphylococcus aureus KT/312045, an ST1-MSSA PVL positive isolated from pus sample in East Coast Malaysia. PMID:27508119
Pea Broth Enhances the Biocontrol Efficacy of Lysobacter capsici AZ78 by Triggering Cell Motility Associated with Biogenesis of Type IV Pilus. PMID:27507963
The Cell Wall Polymer Lipoteichoic Acid Becomes Nonessential in Staphylococcus aureus Cells Lacking the ClpX Chaperone. PMID:27507828
Genomics of variation in nitrogen fixation activity in a population of the thermophilic cyanobacterium Mastigocladus laminosus. PMID:27505345
Comparative Genomics Analysis of Streptococcus tigurinus Strains Identifies Genetic Elements Specifically and Uniquely Present in Highly Virulent Strains. PMID:27505001
Modeling central metabolism and energy biosynthesis across microbial life. PMID:27502787
Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts. PMID:27501945
Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era. PMID:27493643
Comparative evaluation of the genomes of three common Drosophila-associated bacteria. PMID:27493201
Genomic and functional features of the biosurfactant producing Bacillus sp. AM13. PMID:27492417
Draft Genome Sequences of Legionella pneumophila JR32 and Lp01 Laboratory Strains Domesticated in Japan. PMID:27491976
Complete Genome Sequence of a Novel Bacillus sp. VT 712 Strain Isolated from the Duodenum of a Patient with Intestinal Cancer. PMID:27491975
Lactobacillus oligofermentans glucose, ribose and xylose transcriptomes show higher similarity between glucose and xylose catabolism-induced responses in the early exponential growth phase. PMID:27487841
Draft genome sequence of Mycobacterium rufum JS14(T), a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii. PMID:27486485
Genome of Rhizobium leucaenae strains CFN 299(T) and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. PMID:27485828
Large Sequence Diversity within the Biosynthesis Locus and Common Biochemical Features of Campylobacter coli Lipooligosaccharides. PMID:27481928
Genome sequence of OXA-23 producing Acinetobacter baumannii IHIT7853, a carbapenem-resistant strain from a cat belonging to international clone IC1. PMID:27471549
Genome Sequence of Bacillus anthracis Strain Tangail-1 from Bangladesh. PMID:27469968
Draft Genome Sequence of an Oceanobacillus sp. Strain Isolated from Soil in a Burial Crypt. PMID:27469952
Draft Genome Sequence of the Emerging Bivalve Pathogen Vibrio tubiashii subsp. europaeus. PMID:27469949
Whole-Genome Sequence of Enteractinococcus helveticum sp. nov. Strain UASWS1574 Isolated from Industrial Used Waters. PMID:27469945
The antibiotic resistome of swine manure is significantly altered by association with the Musca domestica larvae gut microbiome. PMID:27458785
Metatranscriptome analysis of active microbial communities in produced water samples from the Marcellus Shale. PMID:27457653
Development of a Phage Cocktail to Control Proteus mirabilis Catheter-associated Urinary Tract Infections. PMID:27446059
Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea. PMID:27446036
A Comparison of 14 Erythrobacter Genomes Provides Insights into the Genomic Divergence and Scattered Distribution of Phototrophs. PMID:27446024
Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract. PMID:27445992
Genome Sequence of the K139-Like Phage VcP032 Originating from the Vibrio cholerae O1 El Tor Ogawa Serotype. PMID:27445393
Genome Sequence of Streptomyces sp. Strain RTd22, an Endophyte of the Mexican Sunflower. PMID:27445382
Complete Genome Sequence of Hemolysin-Containing Carnobacterium sp. Strain CP1 Isolated from the Antarctic. PMID:27445381
Genome Sequence of the Uncommon Streptococcus pyogenes M/emm66 Strain STAB13021, Isolated from Clonal Clustered Cases in French Brittany. PMID:27445380
Draft Genome Sequence and Complete Plasmid Sequence of Acinetobacter lwoffii F78, an Isolate with Strong Allergy-Protective Properties. PMID:27445377
Draft Genome Sequence of a Tetrabromobisphenol A-Degrading Strain, Ochrobactrum sp. T, Isolated from an Electronic Waste Recycling Site. PMID:27445374
Whole-genome sequence of Sunxiuqinia dokdonensis DH1(T), isolated from deep sub-seafloor sediment in Dokdo Island. PMID:27437183
IncA/C Conjugative Plasmids Mobilize a New Family of Multidrug Resistance Islands in Clinical Vibrio cholerae Non-O1/Non-O139 Isolates from Haiti. PMID:27435459
Biochemical Characterization of a Family 15 Carbohydrate Esterase from a Bacterial Marine Arctic Metagenome. PMID:27433797
Homologous Recombination within Large Chromosomal Regions Facilitates Acquisition of β-Lactam and Vancomycin Resistance in Enterococcus faecium. PMID:27431230
Emergence and Plasmid Analysis of Klebsiella pneumoniae KP01 Carrying blaGES-5 from Guangzhou, China. PMID:27431225
Lactobacillus rhamnosus GG Outcompetes Enterococcus faecium via Mucus-Binding Pili: Evidence for a Novel and Heterospecific Probiotic Mechanism. PMID:27422834
Complete genome sequencing and comparative genomic analysis of functionally diverse Lysinibacillus sphaericus III(3)7. PMID:27419068
Draft Genome Sequences of Four Bacterial Strains Isolated from a Polymicrobial Culture of Naked (N-Type) Emiliania huxleyi CCMP1516. PMID:27417846
Draft Genome Sequences of Seven Bacterial Strains Isolated from a Polymicrobial Culture of Coccolith-Bearing (C-Type) Emiliania huxleyi M217. PMID:27417845
Whole-Genome Sequence of Filimonas lacunae, a Bacterium of the Family Chitinophagaceae Characterized by Marked Colony Growth under a High-CO2 Atmosphere. PMID:27417842
Draft Genome Sequence of the Bacteriocinogenic Strain Enterococcus faecalis DBH18, Isolated from Mallard Ducks (Anas platyrhynchos). PMID:27417838
Complete Genome Sequence of Bacillus velezensis CBMB205, a Phosphate-Solubilizing Bacterium Isolated from the Rhizoplane of Rice in the Republic of Korea. PMID:27417835
Draft Whole-Genome Sequence of the Type Strain Bacillus horikoshii DSM 8719. PMID:27417833
Draft Whole-Genome Sequence of the Type Strain Bacillus aquimaris TF12T. PMID:27417832
The Genomic Sequence of the Oral Pathobiont Strain NI1060 Reveals Unique Strategies for Bacterial Competition and Pathogenicity. PMID:27409077
Comparative genomic analysis of Klebsiella pneumoniae subsp. pneumoniae KP617 and PittNDM01, NUHL24835, and ATCC BAA-2146 reveals unique evolutionary history of this strain. PMID:27408624
Genetic determinants of lactococcal C2viruses for host infection and their role in phage evolution. PMID:27389474
Draft Genome Sequence of the Endophytic Strain Rhodococcus kyotonensis KB10, a Potential Biodegrading and Antibacterial Bacterium Isolated from Arabidopsis thaliana. PMID:27389269
Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. PMID:27388460
Two Inducible Prophages of an Antarctic Pseudomonas sp. ANT_H14 Use the Same Capsid for Packaging Their Genomes - Characterization of a Novel Phage Helper-Satellite System. PMID:27387973
Comparative genomic and functional analyses: unearthing the diversity and specificity of nematicidal factors in Pseudomonas putida strain 1A00316. PMID:27384076
Interspecies Dissemination of a Mobilizable Plasmid Harboring blaIMP-19 and the Possibility of Horizontal Gene Transfer in a Single Patient. PMID:27381397
The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing. PMID:27379049
From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model. PMID:27379044
Comparative genomic analysis of novel Acinetobacter symbionts: A combined systems biology and genomics approach. PMID:27378055
Genome Sequence of Bradyrhizobium stylosanthis Strain BR 446T, a Nitrogen-Fixing Symbiont of the Legume Pasture Stylosanthes guianensis. PMID:27365354
Genome Sequence of the Red Pigment-Forming Meiothermus taiwanensis Strain RP Isolated from Paniphala Hot Spring, India. PMID:27365353
Draft Genome Sequence of Acinetobacter sp. Strain BMW17, a Cellulolytic and Plant Growth-Promoting Bacterium Isolated from the Rhizospheric Region of Phragmites karka of Chilika Lake, India. PMID:27365343
Draft Genome Sequence of Halobacillus sp. Strain KGW1, a Moderately Halophilic and Alkaline Protease-Producing Bacterium Isolated from the Rhizospheric Region of Phragmites karka from Chilika Lake, Odisha, India. PMID:27365341
Draft Genome Sequence of Pseudomonas sp. Strain BMS12, a Plant Growth-Promoting and Protease-Producing Bacterium, Isolated from the Rhizosphere Sediment of Phragmites karka of Chilika Lake, India. PMID:27365340
Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T. PMID:27358428
Propionibacterium avidum as an Etiological Agent of Prosthetic Hip Joint Infection. PMID:27355425
Genomic Analysis and Comparison of Two Gonorrhea Outbreaks. PMID:27353752
Genomic Diversity of Enterotoxigenic Strains of Bacteroides fragilis. PMID:27348220
Bioinformatic Characterization of Mosquito Viromes within the Eastern United States and Puerto Rico: Discovery of Novel Viruses. PMID:27346944
Draft Genome Sequence of Gordonia sihwensis Strain 9, a Branched Alkane-Degrading Bacterium. PMID:27340079
Draft Genome Sequence of Bacillus licheniformis Strain GB2, a Hydrocarbon-Degrading and Plant Growth-Promoting Soil Bacterium. PMID:27340073
Complete Genome Sequence of Dyella thiooxydans ATSB10, a Thiosulfate-Oxidizing Bacterium Isolated from Sunflower Fields in South Korea. PMID:27340060
Draft Genome Sequence and Gene Annotation of the Uropathogenic Bacterium Proteus mirabilis Pr2921. PMID:27340058
Within-Host Evolution of the Dutch High-Prevalent Pseudomonas aeruginosa Clone ST406 during Chronic Colonization of a Patient with Cystic Fibrosis. PMID:27337151
Whole genome sequence analysis of an Alachlor and Endosulfan degrading Pseudomonas strain W15Feb9B isolated from Ochlockonee River, Florida. PMID:27330991
Draft genome sequence of sulfur-reducing archaeon Thermococcus thioreducens DSM 14981T. PMID:27328615
A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site. PMID:27327432
Draft Genome Sequence of Kocuria rhizophila strain TPW45, an Actinobacterium Isolated from Freshwater. PMID:27326264
Draft Genome Sequence of Paracoccus sp. MKU1, a New Bacterial Strain Isolated from an Industrial Effluent with Potential for Bioremediation. PMID:27326263
Complete genome sequence of Vibrio vulnificus FORC_017 isolated from a patient with a hemorrhagic rash after consuming raw dotted gizzard shad. PMID:27325916
Whole genome sequencing as a tool for phylogenetic analysis of clinical strains of Mitis group streptococci. PMID:27325438
Full-Length Nucleotide Sequences of mcr-1-Harboring Plasmids Isolated from Extended-Spectrum-β-Lactamase-Producing Escherichia coli Isolates of Different Origins. PMID:27324774
Isolation and Characterization of NDM-Positive Escherichia coli from Municipal Wastewater in Jeddah, Saudi Arabia. PMID:27324770
Shotgun Metagenomic Profiles Have a High Capacity To Discriminate Samples of Activated Sludge According to Wastewater Type. PMID:27316957
Draft Genome Sequence of Bacillus farraginis R-6540T (DSM 16013), a Spore-Forming Bacterium Isolated at Dairy Farms. PMID:27313303
Draft Whole-Genome Sequences of Three Lactobacillus plantarum Food Isolates. PMID:27313301
Genome Sequences of Two Tunisian Field Strains of Avian Mycoplasma, M. meleagridis and M. gallinarum. PMID:27313300
Whole-Genome Sequence of Hafnia alvei HUMV-5920, a Human Isolate. PMID:27313299
Whole-Genome Sequencing Analysis of Methicillin-Resistant Staphylococcus simulans Causing Surgical Site Infection. PMID:27313298
Complete Genome Sequence of Bacteriophage Deep-Blue Infecting Emetic Bacillus cereus. PMID:27313285
CRISPR-Cas and Restriction-Modification Act Additively against Conjugative Antibiotic Resistance Plasmid Transfer in Enterococcus faecalis. PMID:27303749
Highly Variable Streptococcus oralis Strains Are Common among Viridans Streptococci Isolated from Primates. PMID:27303717
Comparative Analysis of Genomics and Proteomics in the New Isolated Bacillus thuringiensis X022 Revealed the Metabolic Regulation Mechanism of Carbon Flux Following Cu(2+) Treatment. PMID:27303381
Phylogenomic Analysis of Natural Products Biosynthetic Gene Clusters Allows Discovery of Arseno-Organic Metabolites in Model Streptomycetes. PMID:27289100
Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones. PMID:27289094
Complete Genome Sequence of Mycobacterium chelonae Type Strain CCUG 47445, a Rapidly Growing Species of Nontuberculous Mycobacteria. PMID:27284158
Draft Genome Sequence of Dietzia maris DSM 43672, a Gram-Positive Bacterium of the Mycolata Group. PMID:27284155
Draft Genome Sequence of Staphylococcus succinus Strain CSM-77, a Moderately Halophilic Bacterium Isolated from a Triassic Salt Mine. PMID:27284152
Draft Genome Sequences of Two Heat-Resistant Mutant Strains (A52 and B41) of the Photosynthetic Hydrogen-Producing Bacterium Rhodobacter capsulatus. PMID:27284151
Draft Genome Assembly of the Bloom-Forming Cyanobacterium Nodularia spumigena Strain CENA596 in Shrimp Production Ponds. PMID:27284148
Genome Sequence of Hafnia alvei bta3_1, a Bacterium with Antimicrobial Properties Isolated from Honey Bee Gut. PMID:27284146
Whole-Genome Sequences of Seven Strains of Bacillus cereus Isolated from Foodstuff or Poisoning Incidents. PMID:27284145
Draft Genome Sequence of Hydrotalea flava Strain CCUG 51397T. PMID:27284140
Complete genome sequence of Leuconostoc gelidum subsp. gasicomitatum KG16-1, isolated from vacuum-packaged vegetable sausages. PMID:27274361
Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity. PMID:27272929
Prophages mediate defense against phage infection through diverse mechanisms. PMID:27258950
Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus. PMID:27258949
Elucidation of the Metabolic Network of Helicobacter pylori J99 and Malaysian Clinical Strains by Phenotype Microarray. PMID:27258354
Complete Genomes of Bacillus coagulans S-lac and Bacillus subtilis TO-A JPC, Two Phylogenetically Distinct Probiotics. PMID:27258038
Genome sequencing and annotation of a Campylobacter coli strain isolated from milk with multidrug resistance. PMID:27257607
SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals. PMID:27257541
Noncontiguous finished genome sequence and description of Bacillus andreraoultii strain SIT1(T) sp. nov. PMID:27257486
Draft Genome Sequence of Methylobacterium sp. Strain ARG-1 Isolated from the White-Rot Fungus Armillaria gallica. PMID:27257212
First Draft Genome Sequence of Staphylococcus condimenti F-2T. PMID:27257207
Draft Whole-Genome Sequence of Sphingobium sp. 22B, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium from Semiarid Patagonia, Argentina. PMID:27257204
Draft Whole-Genome Sequences of 11 Bacillus cereus Food Isolates. PMID:27257202
Complete Genome Sequence of Enterobacter cloacae B2-DHA, a Chromium-Resistant Bacterium. PMID:27257201
Draft Genome Sequences of Listeria monocytogenes Serotype 4b Strains 944 and 2993 and Serotype 1/2c Strains 198 and 2932. PMID:27257200
Draft Genome Sequence of Lactobacillus plantarum BFE 5092 Isolated from Maasai Fermented Milk. PMID:27257199
Draft Genome Sequence of Bacillus sp. GZT, a 2,4,6-Tribromophenol-Degrading Strain Isolated from the River Sludge of an Electronic Waste-Dismantling Region. PMID:27257197
Draft Genome Sequence of Bacillus subtilis ALBA01, a Strain with Antagonistic Activity against the Soilborne Fungal Pathogen of Onion Setophoma terrestris. PMID:27257193
Efficient Synergistic Single-Cell Genome Assembly. PMID:27243002
Quantification of Slackia and Eggerthella spp. in Human Feces and Adhesion of Representatives Strains to Caco-2 Cells. PMID:27242689
First Complete Genome Sequence of a Subdivision 6 Acidobacterium Strain. PMID:27231379
Complete Genome Sequence of Pseudomonas fluorescens LBUM636, a Strain with Biocontrol Capabilities against Late Blight of Potato. PMID:27231373
Complete Genome Sequence of the Mycobacterium immunogenum Type Strain CCUG 47286. PMID:27231356
The mucin-degradation strategy of Ruminococcus gnavus: The importance of intramolecular trans-sialidases. PMID:27223845
Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions. PMID:27222803
Whole genome sequencing for deciphering the resistome of Chryseobacterium indologenes, an emerging multidrug-resistant bacterium isolated from a cystic fibrosis patient in Marseille, France. PMID:27222716
Noncontiguous finished genome sequence and description of Bacillus testis strain SIT10 sp. nov. PMID:27222713
Spread of Plasmids Carrying Multiple GES Variants. PMID:27216071
Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia sp. Cryptic Lineage 1 Strain 7v Harbors a Hybrid Plasmid. PMID:27208138
Potential Mechanisms for Microbial Energy Acquisition in Oxic Deep-Sea Sediments. PMID:27208118
Genome sequence and description of Actinomyces polynesiensis str. MS2 sp. nov. isolated from the human gut. PMID:27200177
Isolation and Characterization of the First Xylanolytic Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1 and Its Unusual Multidomain Glycosidase. PMID:27199905
Draft Genome Sequence of Pseudomonas fluorescens Strain ET76, Isolated from Rice Rhizosphere in Northwestern Morocco. PMID:27198014
Genome Sequence of Propionibacterium acidipropionici ATCC 55737. PMID:27198010
Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1. PMID:27190166
Pangenome Evolution in the Marine Bacterium Alteromonas. PMID:27189983
Functional Green-Tuned Proteorhodopsin from Modern Stromatolites. PMID:27187791
Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction. PMID:27186840
Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199. PMID:27186238
Falsirhodobacter sp. alg1 Harbors Single Homologs of Endo and Exo-Type Alginate Lyases Efficient for Alginate Depolymerization. PMID:27176711
Draft Genome Sequence of Hydrocarbon-Degrading Staphylococcus saprophyticus Strain CNV2, Isolated from Crude Oil-Contaminated Soil from the Noonmati Oil Refinery, Guwahati, Assam, India. PMID:27174281
Draft Genome Sequence of Hydrocarbon-Degrading Enterobacter cloacae Strain S1:CND1, Isolated from Crude Oil-Contaminated Soil from the Noonmati Oil Refinery, Guwahati, Assam, India. PMID:27174279
Draft Genome Sequence of Lactobacillus sakei Strain FBL1, a Probiotic Bacterium Isolated from Mukeunji, a Long-Fermented Kimchi, in South Korea. PMID:27174278
Draft Genome Sequences of Four Plant Probiotic Bacillus Strains. PMID:27174273
Draft Genome Sequence of Lampenflora Chlorobium limicola Strain Frasassi in a Sulfidic Cave System. PMID:27174272
Whole-Genome Sequence of Salmonella enterica Serovar Enteritidis Phage Type 4, Isolated from a Brazilian Poultry Farm. PMID:27174265
Draft Genome Sequence of Bacillus licheniformis CG-B52, a Highly Virulent Bacterium of Pacific White Shrimp (Litopenaeus vannamei), Isolated from a Colombian Caribbean Aquaculture Outbreak. PMID:27174263
Genome Sequences of 12 Spore-Forming Bacillus Species, Comprising Bacillus coagulans, Bacillus licheniformis, Bacillus amyloliquefaciens, Bacillus sporothermodurans, and Bacillus vallismortis, Isolated from Foods. PMID:27174261
Elucidation of the Mode of Action of a New Antibacterial Compound Active against Staphylococcus aureus and Pseudomonas aeruginosa. PMID:27167126
Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison. PMID:27162150
Whole-Genome Sequence of Vibrio alginolyticus Isolated from the Mucus of the Coral Fungia danai in the Andaman Sea, India. PMID:27151803
Complete Genome Sequence of Streptomyces venezuelae ATCC 15439, Producer of the Methymycin/Pikromycin Family of Macrolide Antibiotics, Using PacBio Technology. PMID:27151802
Draft Genome of Shewanella frigidimarina Ag06-30, a Marine Bacterium Isolated from Potter Peninsula, King George Island, Antarctica. PMID:27151790
Complete Genome Sequence of the Larvicidal Bacterium Lysinibacillus sphaericus Strain OT4b.25. PMID:27151786
Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis. PMID:27151785
Draft Genome Sequence of Cylindrospermopsis raciborskii (Cyanobacteria) Strain ITEP-A1 Isolated from a Brazilian Semiarid Freshwater Body: Evidence of Saxitoxin and Cylindrospermopsin Synthetase Genes. PMID:27151783
Draft Genome Sequences of Seven Thermophilic Spore-Forming Bacteria Isolated from Foods That Produce Highly Heat-Resistant Spores, Comprising Geobacillus spp., Caldibacillus debilis, and Anoxybacillus flavithermus. PMID:27151781
D1FHS, the Type Strain of the Ammonia-Oxidizing Bacterium Nitrosococcus wardiae spec. nov.: Enrichment, Isolation, Phylogenetic, and Growth Physiological Characterization. PMID:27148201
Comparative genomic analysis of six new-found integrative conjugative elements (ICEs) in Vibrio alginolyticus. PMID:27145747
Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogen Pseudomonas syringae. PMID:27145446
Solid tumors provide niche-specific conditions that lead to preferential growth of Salmonella. PMID:27145267
Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling. PMID:27143384
StreptoBase: An Oral Streptococcus mitis Group Genomic Resource and Analysis Platform. PMID:27138013
A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior. PMID:27128997
Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems. PMID:27125755
Complete Genome Sequence of Serratia rubidaea Isolated in China. PMID:27125482
Draft Genome Sequence of Mycobacterium brumae ATCC 51384. PMID:27125480
Genome Sequence of Kocuria palustris Strain CD07_3 Isolated from the Duodenal Mucosa of a Celiac Disease Patient. PMID:27125478
The anaerobic linalool metabolism in Thauera linaloolentis 47 Lol. PMID:27118314
Draft genome sequence of Psychrobacter sp. ENNN9_III, a strain isolated from water in a polluted temperate estuarine system (Ria de Aveiro, Portugal). PMID:27114904
Plasmid and Host Strain Characteristics of Escherichia coli Resistant to Extended-Spectrum Cephalosporins in the Norwegian Broiler Production. PMID:27111852
Companion: a web server for annotation and analysis of parasite genomes. PMID:27105845
Draft Genome Sequence of a Novel Marine Bacterium, Paraglaciecola sp. Strain S66, with Hydrolytic Activity against Seaweed Polysaccharides. PMID:27103729
Draft Genome Sequence of Xylella fastidiosa subsp. fastidiosa Strain Stag's Leap. PMID:27103713
Draft Genome Sequence of Bacillus clausii UBBC07, a Spore-Forming Probiotic Strain. PMID:27103711
Draft Genome Sequence of the Spore-Forming Probiotic Strain Bacillus coagulans Unique IS-2. PMID:27103709
Draft genome sequence of non-shiga toxin-producing Escherichia coli O157 NCCP15738. PMID:27096008
Insights from the Genome Sequence of Acidovorax citrulli M6, a Group I Strain of the Causal Agent of Bacterial Fruit Blotch of Cucurbits. PMID:27092114
Genome Sequence of the Fish Pathogen Yersinia ruckeri SC09 Provides Insights into Niche Adaptation and Pathogenic Mechanism. PMID:27089334
Draft Genome Sequence of an Environmental trh+ Vibrio parahaemolyticus K23 Strain Isolated from Kerala, India. PMID:27081143
Draft Genome Sequence of Clostridium sporogenes Strain UC9000 Isolated from Raw Milk. PMID:27081128
Overcoming Enterotoxigenic Escherichia coli Pathogen Diversity: Translational Molecular Approaches to Inform Vaccine Design. PMID:27076141
Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior. PMID:27073591
Extensive Mobilome-Driven Genome Diversification in Mouse Gut-Associated Bacteroides vulgatus mpk. PMID:27071651
Genomic Features and Niche-Adaptation of Enterococcus faecium Strains from Korean Soybean-Fermented Foods. PMID:27070419
Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies. PMID:27069789
ICESpy009, a Conjugative Genetic Element Carrying mef(E) in Streptococcus pyogenes. PMID:27067338
Complete Sequence of the FII Plasmid p42-2, Carrying blaCTX-M-55, oqxAB, fosA3, and floR from Escherichia coli. PMID:27067314
The genome anatomy of Corynebacterium pseudotuberculosis VD57 a highly virulent strain causing Caseous lymphadenitis. PMID:27066196
Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres. PMID:27065971
Biosynthesis, Chemical Structure, and Structure-Activity Relationship of Orfamide Lipopeptides Produced by Pseudomonas protegens and Related Species. PMID:27065956
Genome Sequence of Bacillus anthracis Strain Stendal, Isolated from an Anthrax Outbreak in Cattle in Germany. PMID:27056225
Draft Genome Sequence of the New Pathogen for Bivalve Larvae Vibrio bivalvicida. PMID:27056224
Draft Genome Sequences of Three Bacillus Species from South African Marine Sponges. PMID:27056214
Metagenomics Reveals Dysbiosis and a Potentially Pathogenic N. flavescens Strain in Duodenum of Adult Celiac Patients. PMID:27045926
Origin of Chemical Diversity in Prochloron-Tunicate Symbiosis. PMID:27037119
Comparative Genomic Analysis Reveals a Possible Novel Non-Tuberculous Mycobacterium Species with High Pathogenic Potential. PMID:27035710
Draft Genome Sequence of Vibrio toranzoniae Strain CECT 7225T. PMID:27034502
Draft Genome Sequence of Paenibacillus sp. Strain DMB5, Acclimatized and Enriched for Catabolizing Anthropogenic Compounds. PMID:27034501
Draft Genome Sequences of Seven Multidrug-Resistant Acinetobacter baumannii Strains, Isolated from Respiratory Samples in Spain. PMID:27034482
Whole-Genome Sequencing and Comparative Analysis of Mycobacterium brisbanense Reveals a Possible Soil Origin and Capability in Fertiliser Synthesis. PMID:27031249
The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr. PMID:27028007
Draft Genome Sequence of Providencia sneebia Strain ST1, a Quorum Sensing Bacterium Associated with Marine Microalgae. PMID:27026792
NeisseriaBase: a specialised Neisseria genomic resource and analysis platform. PMID:27017950
Phylogenetic and Functional Substrate Specificity for Endolithic Microbial Communities in Hyper-Arid Environments. PMID:27014224
Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island. PMID:27014193
Whole-Genome Sequence of Bacillus sp. SDLI1, Isolated from the Social Bee Scaptotrigona depilis. PMID:27013050
Complete Genome Sequence of Alteromonas stellipolaris LMG 21856, a Budding Brown Pigment-Producing Oligotrophic Bacterium Isolated from the Southern Ocean. PMID:27013039
Draft Genome Sequences of Streptococcus agalactiae Serotype Ia and III Isolates from Tilapia Farms in Thailand. PMID:27013037
Draft Genome Sequence of the Bacteriocin-Producing Strain Enterococcus faecium M3K31, Isolated from Griffon Vultures (Gyps fulvus subsp. fulvus). PMID:27013035
Whole genome comparison of six Crocosphaera watsonii strains with differing phenotypes. PMID:27007210
Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura). PMID:26994086
Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila. PMID:26992913
Draft genome sequence of a caprolactam degrader bacterium: Pseudomonas taiwanensis strain SJ9. PMID:26991304
Draft Genome Sequence of "Halomonas chromatireducens" Strain AGD 8-3, a Haloalkaliphilic Chromate- and Selenite-Reducing Gammaproteobacterium. PMID:26988058
Draft Genome Sequence of Aliiroseovarius crassostreae CV919-312, the Causative Agent of Roseovarius Oyster Disease (Formerly Juvenile Oyster Disease). PMID:26988054
Whole-Genome Sequences of Two Campylobacter coli Isolates from the Antimicrobial Resistance Monitoring Program in Colombia. PMID:26988048
Whole-Genome Sequence of Multidrug-Resistant Campylobacter coli Strain COL B1-266, Isolated from the Colombian Poultry Chain. PMID:26988047
Draft Genome Sequences of 10 Bacillus subtilis Strains That Form Spores with High or Low Heat Resistance. PMID:26988043
Complete Genome Sequence of Vancomycin-Intermediate Staphylococcus aureus Strain MI (HIP5827). PMID:26988042
Complete Genome Sequence of Enterococcus faecium Commensal Isolate E1002. PMID:26988041
Whole-Genome Sequences of Staphylococcus haemolyticus Isolated from Infected Eyes and Healthy Conjunctiva in Bhubaneswar, India. PMID:26988040
Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment. PMID:26988038
Diverse Ecological Strategies Are Encoded by Streptococcus pneumoniae Bacteriocin-Like Peptides. PMID:26983823
Comparative Genomic Analysis of Sulfurospirillum cavolei MES Reconstructed from the Metagenome of an Electrosynthetic Microbiome. PMID:26983005
Whole-genome sequence of Clostridium lituseburense L74, isolated from the larval gut of the rhinoceros beetle, Trypoxylus dichotomus. PMID:26981432
Genome sequencing and annotation of multidrug resistant Mycobacterium tuberculosis (MDR-TB) PR10 strain. PMID:26981419
Draft genome sequence of strain MC1A, a UV-resistant bacterium isolated from dry soil in Puerto Rico. PMID:26981418
Draft genome sequence of Thalassobius mediterraneus CECT 5383(T), a poly-beta-hydroxybutyrate producer. PMID:26981416
Draft genome of Leisingera aquaemixtae CECT 8399(T), a member of the Roseobacter clade isolated from a junction of fresh and ocean water in Jeju Island, South Korea. PMID:26981415
Genome sequence of Enterobacter sp. ST3, a quorum sensing bacterium associated with marine dinoflagellate. PMID:26981407
Draft genome sequence of a multidrug-resistant Chryseobacterium indologenes isolate from Malaysia. PMID:26981402
Draft genome sequence of Kocuria sp. SM24M-10 isolated from coral mucus. PMID:26981384
Genome Sequencing and Annotation of Mycobacterium tuberculosis PR08 strain. PMID:26981383
Whole genome analysis of Klebsiella pneumoniae T2-1-1 from human oral cavity. PMID:26981378
Genome sequence of carboxylesterase, carboxylase and xylose isomerase producing alkaliphilic haloarchaeon Haloterrigena turkmenica WANU15. PMID:26981365
Insights into mutualism mechanism and versatile metabolism of Ketogulonicigenium vulgare Hbe602 based on comparative genomics and metabolomics studies. PMID:26979567
Linalool isomerase, a membrane-anchored enzyme in the anaerobic monoterpene degradation in Thauera linaloolentis 47Lol. PMID:26979141
A Brazilian Marseillevirus Is the Founding Member of a Lineage in Family Marseilleviridae. PMID:26978387
Evidence of horizontal gene transfer between obligate leaf nodule symbionts. PMID:26978165
Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease. PMID:26971047
Isolation and Complete Genome Sequence of Algibacter alginolytica sp. nov., a Novel Seaweed-Degrading Bacteroidetes Bacterium with Diverse Putative Polysaccharide Utilization Loci. PMID:26969704
Comparative Single-Cell Genomics of Chloroflexi from the Okinawa Trough Deep-Subsurface Biosphere. PMID:26969693
Draft Genome Sequence of Acinetobacter bereziniae HPC229, a Carbapenem-Resistant Clinical Strain from Argentina Harboring blaNDM-1. PMID:26966220
Draft Genome Sequence of Cobetia sp. UCD-24C, Isolated from Roots and Leaves of the Seagrass Zostera marina. PMID:26966219
Whole-Genome Sequence of Bradyrhizobium elkanii Strain UASWS1015, a Highly Ammonia-Tolerant Nitrifying Bacterium. PMID:26966217
Draft Genome Sequence of Mesorhizobium sp. UFLA 01-765, a Multitolerant, Efficient Symbiont and Plant Growth-Promoting Strain Isolated from Zn-Mining Soil Using Leucaena leucocephala as a Trap Plant. PMID:26966214
Genome Sequencing of Serinicoccus chungangensis Strain CD08_5 Isolated from Duodenal Mucosa of a Celiac Disease Patient. PMID:26966212
Draft Genome Sequence of Lactobacillus plantarum CRL1506, an Immunomodulatory Strain Isolated from Goat Milk. PMID:26966208
Draft Genome Sequence of Commercial Textile Dye-Decolorizing and -Degrading Bacillus subtilis Strain C3 Isolated in India. PMID:26966205
Draft Genome Sequence of Kocuria rhizophila RF, a Radiation-Resistant Soil Isolate. PMID:26966202
Draft Genome Sequence of Escherichia coli Strain SEC470, Isolated from a Piglet Experiencing Diarrhea. PMID:26966199
Genome Sequence of Stenotrophomonas maltophilia Strain SmAs1, Isolated From the Asian Malaria Mosquito Anopheles stephensi. PMID:26966198
Genome Sequences of Staphylococcus hominis Strains ShAs1, ShAs2, and ShAs3, Isolated from the Asian Malaria Mosquito Anopheles stephensi. PMID:26966197
Genome Sequence of Elizabethkingia anophelis Strain EaAs1, Isolated from the Asian Malaria Mosquito Anopheles stephensi. PMID:26966196
The virulence factor ychO has a pleiotropic action in an Avian Pathogenic Escherichia coli (APEC) strain. PMID:26965678
Ecological genomics of mutualism decline in nitrogen-fixing bacteria. PMID:26962142
Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates of Pseudomonas aeruginosa. PMID:26962050
Data in support of the comparative genome analysis of Lysinibacillus B1-CDA, a bacterium that accumulates arsenics. PMID:26958612
Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows. PMID:26958092
Draft Genome Sequence of Lactobacillus plantarum SF2A35B. PMID:26950330
Whole-Genome Sequence of Corynebacterium pseudotuberculosis Strain 226, Isolated from the Abscess of a Goat in California. PMID:26950327
Draft Genome Sequence of Bacillus mycoides M2E15, a Strain Isolated from the Endosphere of Potato. PMID:26950325
Draft Genome Sequence of Pantoea ananatis GB1, a Plant-Growth-Promoting Hydrocarbonoclastic Root Endophyte, Isolated at a Diesel Fuel Phytoremediation Site Planted with Populus. PMID:26950324
Draft Genome Sequence of a Salmonella enterica subsp. enterica Serovar Gallinarum bv. Gallinarum Isolate Associated with Fowl Typhoid Outbreaks in Brazil. PMID:26950322
Draft Genome Sequence of an Invasive Streptococcus agalactiae Isolate Lacking Pigmentation. PMID:26950320
Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b. PMID:26944551
The Mycobacterium phlei Genome: Expectations and Surprises. PMID:26941228
Whole-Genome Sequencing Analysis of Chromobacterium piscinae Strain ND17, a Quorum-Sensing Bacterium. PMID:26941152
Draft Genome Sequence of Alcaligenes faecalis Strain IITR89, an Indole-Oxidizing Bacterium. PMID:26941148
Draft Genome Sequence of Acinetobacter baumannii IITR88, a Bacterium Degrading Indoles and Other Aromatic Compounds. PMID:26941147
Draft Genome Sequence of Lactobacillus casei DPC6800, an Isolate with the Potential to Diversify Flavor in Cheese. PMID:26941145
Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile. PMID:26941143
Complete genome of Staphylococcus aureus Tager 104 provides evidence of its relation to modern systemic hospital-acquired strains. PMID:26940863
Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites. PMID:26937267
Comparative modeling and molecular dynamics suggest high carboxylase activity of the Cyanobium sp. CACIAM14 RbcL protein. PMID:26936271
Phenotypic, molecular characterization, antimicrobial susceptibility and draft genome sequence of Corynebacterium argentoratense strains isolated from clinical samples. PMID:26933505
Draft genomic sequence of Nereida ignava CECT 5292(T), a marine bacterium of the family Rhodobacteraceae. PMID:26929790
Antagonism between Staphylococcus epidermidis and Propionibacterium acnes and its genomic basis. PMID:26924200
Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers. PMID:26923558
Comparative Genomic Analyses of the Moraxella catarrhalis Serosensitive and Seroresistant Lineages Demonstrate Their Independent Evolution. PMID:26912404
N-Acyl Homoserine Lactone-Mediated Quorum Sensing in Aeromonas veronii biovar sobria Strain 159: Identification of LuxRI Homologs. PMID:26909339
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database. PMID:26903996
Complete Genome Sequence Analysis of Pandoraea pnomenusa Type Strain DSM 16536(T) Isolated from a Cystic Fibrosis Patient. PMID:26903988
Sister Dehalobacter Genomes Reveal Specialization in Organohalide Respiration and Recent Strain Differentiation Likely Driven by Chlorinated Substrates. PMID:26903979
The Lysobacter capsici AZ78 Genome Has a Gene Pool Enabling it to Interact Successfully with Phytopathogenic Microorganisms and Environmental Factors. PMID:26903975
Microevolution Analysis of Bacillus coahuilensis Unveils Differences in Phosphorus Acquisition Strategies and Their Regulation. PMID:26903955
Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus. PMID:26900859
Genomic characterization and assessment of the virulence and antibiotic resistance of the novel species Paenibacillus sp. strain VT-400, a potentially pathogenic bacterium in the oral cavity of patients with hematological malignancies. PMID:26900405
Biochemical characterization of extra- and intracellular endoxylanse from thermophilic bacterium Caldicellulosiruptor kronotskyensis. PMID:26899227
Draft Genome Sequences of Two Vibrio splendidus Strains, Isolated from Seagrass Sediment. PMID:26893436
Draft Genome Sequence of Flavobacterium psychrophilum Strain KTEN-1510 with Genotype A/G-C, Isolated from an Ayu (Plecoglossus altivelis altivelis) in the Kagami River, Kochi, Japan. PMID:26893435
High-Quality Draft Genome Sequence of Leucobacter sp. Strain G161, a Distinct and Effective Chromium Reducer. PMID:26893433
Complete Genome Sequence of Multidrug-Resistant Citrobacter freundii Strain P10159, Isolated from Urine Samples from a Patient with Esophageal Carcinoma. PMID:26893430
Draft Genome Sequence of Type Strain Streptococcus gordonii ATCC 10558. PMID:26893427
Draft Genome Sequence of Pantoea ananatis Strain AMG521, a Rice Plant Growth-Promoting Bacterial Endophyte Isolated from the Guadalquivir Marshes in Southern Spain. PMID:26893418
Draft Genome Sequence of a Thermophilic Cyanobacterium from the Family Oscillatoriales (Strain MTP1) from the Chalk River, Colorado. PMID:26893415
Draft Genome Sequence of the Photoheterotrophic Chloracidobacterium thermophilum Strain OC1 Found in a Mat at Ojo Caliente. PMID:26893414
Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina. PMID:26893412
Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae. PMID:26890371
Comparative Analysis of Lacinutrix Genomes and Their Association with Bacterial Habitat. PMID:26882010
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity. PMID:26879123
Whole genome sequencing of "Faecalibaculum rodentium" ALO17, isolated from C57BL/6J laboratory mouse feces. PMID:26877770
Large genomic differences between Moraxella bovoculi isolates acquired from the eyes of cattle with infectious bovine keratoconjunctivitis versus the deep nasopharynx of asymptomatic cattle. PMID:26872821
Molecular characterisation of the Chlamydia pecorum plasmid from porcine, ovine, bovine, and koala strains indicates plasmid-strain co-evolution. PMID:26870613
A Bacterial Quorum-Sensing Precursor Induces Mortality in the Marine Coccolithophore, Emiliania huxleyi. PMID:26870019
Genome Sequence of Bacillus pumilus Strain Bonn, Isolated from an Anthrax-Like Necrotic Skin Infection Site of a Child. PMID:26868410
Draft Genome Sequence of Pseudomonas sp. Strain ADP, a Bacterial Model for Studying the Degradation of the Herbicide Atrazine. PMID:26868408
Draft Genome Sequence of Uncultured SAR324 Bacterium lautmerah10, Binned from a Red Sea Metagenome. PMID:26868398
Draft Genome Sequence of Sphingomonas sp. WG, a Welan Gum-Producing Strain. PMID:26868397
Draft Genome Sequence of Enterococcus faecium Strain 58m, Isolated from Intestinal Tract Content of a Woolly Mammoth, Mammuthus primigenius. PMID:26868396
Draft Genome Sequence of the Fish Pathogen Mycobacterium pseudoshottsii Strain JCM15466, a Species Closely Related to M. marinum. PMID:26868383
Practical Approaches for Detecting Selection in Microbial Genomes. PMID:26867134
Comparative Detection and Quantification of Arcobacter butzleri in Stools from Diarrheic and Nondiarrheic People in Southwestern Alberta, Canada. PMID:26865686
Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum β-lactamase producing ST15 Klebsiella pneumoniae. PMID:26864946
Noncontiguous finished genome sequence and description of Gabonia massiliensis gen. nov., sp. nov. PMID:26862432
Noncontiguous finished genome sequence and description of Kallipyga gabonensis sp. nov. PMID:26862430
Quorum sensing activity of Citrobacter amalonaticus L8A, a bacterium isolated from dental plaque. PMID:26860259
Analysis of the First Temperate Broad Host Range Brucellaphage (BiPBO1) Isolated from B. inopinata. PMID:26858702
Genome of Cnaphalocrocis medinalis Granulovirus, the First Crambidae-Infecting Betabaculovirus Isolated from Rice Leaffolder to Sequenced. PMID:26848752
Draft Genome Sequence of Caloramator mitchellensis, a Thermoanaerobe Isolated from the Waters of the Great Artesian Basin. PMID:26847908
Draft Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis CRL264, a Citrate-Fermenting Strain. PMID:26847906
Draft Genome Sequence of Bacillus humi LMG 22167T (DSM 16318), an Endospore-Forming Bacterium Isolated from Soil. PMID:26847898
Draft Genome Sequence of Bacillus muralis LMG 20238T (DSM 16288), a Spore-Forming Bacterium Isolated from Deteriorated Mural Paintings. PMID:26847897
Draft Genome Sequence of Bacillus plakortidis P203T (DSM 19153), an Alkali- and Salt-Tolerant Marine Bacterium. PMID:26847896
Draft Genome Sequence of Bacillus shackletonii LMG 18435T, Isolated from Volcanic Mossy Soil. PMID:26847895
Draft Genome Sequence of Brevibacillus choshinensis HPD52T (DSM 8552), a Bacterial Host for Efficient Expression of Heterologous Proteins. PMID:26847894
Draft Genome Sequence of Bacillus cecembensis PN5T (DSM 21993), a Psychrotolerant Bacterium Isolated from Soil Samples near the Pindari Glacier. PMID:26847893
Genome Sequence of Acidovorax avenae Strain T10_61 Associated with Sugarcane Red Stripe in Argentina. PMID:26847889
Draft Whole-Genome Sequence of Haemophilus ducreyi Strain AUSPNG1, Isolated from a Cutaneous Ulcer of a Child from Papua New Guinea. PMID:26847887
Complete Genome Sequence of Streptococcus salivarius HSISS4, a Human Commensal Bacterium Highly Prevalent in the Digestive Tract. PMID:26847886
Draft Genome Sequence of Altererythrobacter marensis DSM 21428T, Isolated from Seawater. PMID:26847882
Global biogeography of Prochlorococcus genome diversity in the surface ocean. PMID:26836261
Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases. PMID:26834075
Whole-Genome Sequence of a blaOXA-48-Harboring Raoultella ornithinolytica Clinical Isolate from Lebanon. PMID:26833149
A Highly Arginolytic Streptococcus Species That Potently Antagonizes Streptococcus mutans. PMID:26826230
Complete genome sequence and characterization of avian pathogenic Escherichia coli field isolate ACN001. PMID:26823959
Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain. PMID:26823958
Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing. PMID:26823957
Genome Sequence and Analysis of Peptoclostridium difficile Strain ZJCDC-S82. PMID:26823648
Draft Genome Sequences of Acinetobacter baumannii Strains Harboring the blaNDM-1 Gene Isolated in Lebanon from Civilians Wounded during the Syrian Civil War. PMID:26823599
Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil. PMID:26823595
Draft Genome Sequence of a Potential Nitrate-Dependent Fe(II)-Oxidizing Bacterium, Aquabacterium parvum B6. PMID:26823591
Complete Genome Sequence of the Exopolysaccharide-Producing Burkholderia caribensis Type Strain MWAP64. PMID:26823586
Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon. PMID:26823584
Complete Genome Sequence of Pseudomonas brassicacearum LBUM300, a Disease-Suppressive Bacterium with Antagonistic Activity toward Fungal, Oomycete, and Bacterial Plant Pathogens. PMID:26823582
Draft Genome Sequence of Probiotic Enterococcus faecium Strain L-3. PMID:26823581
Complete Genome Sequence of Fish Pathogen Aeromonas hydrophila JBN2301. PMID:26823580
Genome Sequence of Janthinobacterium sp. CG23_2, a Violacein-Producing Isolate from an Antarctic Supraglacial Stream. PMID:26823573
A multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw-degrading microbial consortia unveils novel thermoalkaliphilic enzymes. PMID:26822785
Specific Gene Loci of Clinical Pseudomonas putida Isolates. PMID:26820467
Draft Genome of Multidrug-Resistant Klebsiella pneumoniae 223/14 Carrying KPC-6, Isolated from a General Hospital in Malaysia. PMID:26816553
Draft Genome Sequences of Two Brucella abortus Strains Isolated from Cattle and Pig. PMID:26816552
Additional Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients. PMID:26798108
Draft Genome Sequence of Erythromycin- and Oxytetracycline-Sensitive Nocardia seriolae Strain U-1 (NBRC 110359). PMID:26798107
Complete Genome Sequences of the Obligate Symbionts "Candidatus Sulcia muelleri" and "Ca. Nasuia deltocephalinicola" from the Pestiferous Leafhopper Macrosteles quadripunctulatus (Hemiptera: Cicadellidae). PMID:26798106
Draft Genome Sequence of Janthinobacterium sp. Ant5-2-1, Isolated from Proglacial Lake Podprudnoye in the Schirmacher Oasis of East Antarctica. PMID:26798103
Draft Genome Sequence of Halomonas sp. HG01, a Polyhydroxyalkanoate-Accumulating Strain Isolated from Peru. PMID:26798101
Draft Genome Sequences of Two Multidrug-Resistant Extended-Spectrum-β-Lactamase-Producing Klebsiella pneumoniae Strains Causing Bloodstream Infections. PMID:26798092
Complete Genome Sequence of Lysinibacillus sphaericus B1-CDA, a Bacterium That Accumulates Arsenic. PMID:26798084
The Complete Sequence and Comparative Analysis of a Multidrug-Resistance and Virulence Multireplicon IncFII Plasmid pEC302/04 from an Extraintestinal Pathogenic Escherichia coli EC302/04 Indicate Extensive Diversity of IncFII Plasmids. PMID:26793180
Protein Sequence Annotation Tool (PSAT): a centralized web-based meta-server for high-throughput sequence annotations. PMID:26792120
Nitrous oxide emission by the non-denitrifying, nitrate ammonifier Bacillus licheniformis. PMID:26786044
Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1. PMID:26779305
The Complete Genome Sequence of the Murine Pathobiont Helicobacter typhlonius. PMID:26779178
Comparative Genomics of Two ST 195 Carbapenem-Resistant Acinetobacter baumannii with Different Susceptibility to Polymyxin Revealed Underlying Resistance Mechanism. PMID:26779129
Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation. PMID:26779119
Developing of the Computer Method for Annotation of Bacterial Genes. PMID:26770195
Draft Genome Sequence of "Cohnella kolymensis" B-2846. PMID:26769947
Complete Genome Sequence of Klebsiella pneumoniae subsp. pneumoniae KP617, Coproducing OXA-232 and NDM-1 Carbapenemases, Isolated in South Korea. PMID:26769936
Draft Genome Sequence of Actinobaculum massiliense Strain FC3. PMID:26769930
Draft Genome Sequence of the Biocontrol and Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens strain UM270. PMID:26767092
Genomic investigation reveals evolution and lifestyle adaptation of endophytic Staphylococcus epidermidis. PMID:26758912
The chromosomal nature of LT-II enterotoxins solved: a lambdoid prophage encodes both LT-II and one of two novel pertussis-toxin-like toxin family members in type II enterotoxigenic Escherichia coli. PMID:26755534
Draft Genome Sequence of Lactobacillus plantarum 2025. PMID:26744375
Predominance of Single Prophage Carrying a CRISPR/cas System in "Candidatus Liberibacter asiaticus" Strains in Southern China. PMID:26741827
Abundant Intergenic TAACTGA Direct Repeats and Putative Alternate RNA Polymerase β' Subunits in Marine Beggiatoaceae Genomes: Possible Regulatory Roles and Origins. PMID:26733950
Molecular and Genomic Characterization of Vibrio mimicus Isolated from a Frozen Shrimp Processing Facility in Mexico. PMID:26730584
Genomic Comparison of Two O111:H- Enterohemorrhagic Escherichia coli Isolates from a Historic Hemolytic-Uremic Syndrome Outbreak in Australia. PMID:26729762
Genome Reconstruction from Metagenomic Data Sets Reveals Novel Microbes in the Brackish Waters of the Caspian Sea. PMID:26729711
Contributions of tropodithietic acid and biofilm formation to the probiotic activity of Phaeobacter inhibens. PMID:26728027
Nesterenkonia sp. strain F, a halophilic bacterium producing acetone, butanol, and ethanol under aerobic conditions. PMID:26725518
Aerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial Chemoautotroph. PMID:26712544
MycoBASE: expanding the functional annotation coverage of mycobacterial genomes. PMID:26704706
What Can We Learn from a Metagenomic Analysis of a Georgian Bacteriophage Cocktail? PMID:26703713
Draft Genome Sequence of "Candidatus Liberibacter asiaticus" from a Citrus Tree in San Gabriel, California. PMID:26701083
Systems Biology Approaches to Understand Natural Products Biosynthesis. PMID:26697425
Draft genome sequence of Bacillus okhensis Kh10-101T, a halo-alkali tolerant bacterium from Indian saltpan. PMID:26697400
The genome sequence of Acinetobacter baumannii isolated from a septicemic patient in a local hospital in Malaysia. PMID:26697353
Genome sequencing and annotation of Proteus sp. SAS71. PMID:26697338
Genome sequencing and annotation of Morganella sp. SA36. PMID:26697333
Genome sequencing and annotation of Stenotrophomonas sp. SAM8. PMID:26697323
Whole genome sequencing of Halomonas sp. SUBG004 isolated from Little Rann of Kutch, a desert of India. PMID:26697321
Whole genome sequences and annotation of Micrococcus luteus SUBG006, a novel phytopathogen of mango. PMID:26697318
Genomic and Functional Characterization of qnr-Encoding Plasmids from Municipal Wastewater Biosolid Klebsiella pneumoniae Isolates. PMID:26696974
Phylogenetic analysis of human Chlamydia pneumoniae strains reveals a distinct Australian indigenous clade that predates European exploration of the continent. PMID:26694618
Global insights into acetic acid resistance mechanisms and genetic stability of Acetobacter pasteurianus strains by comparative genomics. PMID:26691589
Draft genome sequence of Inquilinus limosus strain MP06, a multidrug-resistant clinical isolate. PMID:26691451
SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs. PMID:26689587
De Novo Genome Sequence of "Candidatus Liberibacter solanacearum" from a Single Potato Psyllid in California. PMID:26679599
Genome Sequence of Bradyrhizobium tropiciagri Strain CNPSo 1112T, Isolated from a Root Nodule of Neonotonia wightii. PMID:26679591
Genome Sequence of Bradyrhizobium viridifuturi Strain SEMIA 690T, a Nitrogen-Fixing Symbiont of Centrosema pubescens. PMID:26679590
Next-Generation Whole-Genome Sequencing of Eight Strains of Bacillus cereus, Isolated from Food. PMID:26679589
Draft Genome Sequence of Pedobacter sp. Strain Hv1, an Isolate from Medicinal Leech Mucosal Castings. PMID:26679583
Complete Genome Sequence of Xanthomonas campestris pv. campestris Strain 17 from Taiwan. PMID:26679582
Draft Genome Sequence of Streptomyces mutabilis TRM45540, Isolated from a Hypersaline Soil Sample. PMID:26679581
Draft Genome Sequences of Edwardsiella ictaluri Strains LADL11-100 and LADL11-194 Isolated from Zebrafish Danio rerio. PMID:26679579
Complete Genome Sequence of Streptococcus anginosus J4211, a Clinical Isolate. PMID:26679576
Conserved termini and adjacent variable region of Twortlikevirus Staphylococcus phages. PMID:26670039
Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov. PMID:26669711
MycoCAP - Mycobacterium Comparative Analysis Platform. PMID:26666970
Genome sequence of Lysobacter dokdonensis DS-58(T), a gliding bacterium isolated from soil in Dokdo, Korea. PMID:26664701
Draft genome sequence of Halopiger salifodinae KCY07-B2(T), an extremly halophilic archaeon isolated from a salt mine. PMID:26664653
Genome Sequence Analysis Reveals Evidence of Quorum-Sensing Genes Present in Aeromonas hydrophila strain KOR1, Isolated from a Mangrove Plant (Kandelia obovata). PMID:26659690
Draft Genome Sequence of a Probiotic Strain, Lactobacillus fermentum UCO-979C. PMID:26659681
Complete Genome Sequence of the Freshwater Colorless Sulfur Bacterium Beggiatoa leptomitoformis [corrected] Neotype Strain D-402T. PMID:26659680
Draft Genome Sequence of the Hydrocarbon-Degrading Bacterium Alcanivorax dieselolei KS-293 Isolated from Surface Seawater in the Eastern Mediterranean Sea. PMID:26659675
Comparative genomics Lactobacillus reuteri from sourdough reveals adaptation of an intestinal symbiont to food fermentations. PMID:26658825
Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs. PMID:26644001
Bacteriophage Combinations Significantly Reduce Clostridium difficile Growth In Vitro and Proliferation In Vivo. PMID:26643348
Single-Cell-Genomics-Facilitated Read Binning of Candidate Phylum EM19 Genomes from Geothermal Spring Metagenomes. PMID:26637598
Draft Genome Sequence of the Marine Pathogen Vibrio coralliilyticus RE22. PMID:26634766
Draft Whole-Genome Sequence of Serratia marcescens Strain RM66262, Isolated from a Patient with a Urinary Tract Infection. PMID:26634764
Complete genome sequence of Salinicoccus halodurans H3B36, isolated from the Qaidam Basin in China. PMID:26634017
Genomic Epidemiology of Hypervirulent Serogroup W, ST-11 Neisseria meningitidis. PMID:26629539
Complete genome sequence and characterization of the haloacid-degrading Burkholderia caribensis MBA4. PMID:26629309
The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract. PMID:26626322
Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427). PMID:26617589
Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires. PMID:26617277
Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond. PMID:26615025
Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak. PMID:26613761
Resequencing of the Lactobacillus plantarum Strain WJL Genome. PMID:26607892
Draft Genome Sequence of Streptococcus thermophilus C106, a Dairy Isolate from an Artisanal Cheese Produced in the Countryside of Ireland. PMID:26607891
Nearly Complete Genome Sequence of Lactobacillus plantarum Strain NIZO2877. PMID:26607887
Complete genome sequence of bacteriophage P26218 infecting Rhodoferax sp. strain IMCC26218. PMID:26605005
Draft genome sequence of Janthinobacterium lividum strain MTR reveals its mechanism of capnophilic behavior. PMID:26605004
Comparative genomics and genome biology of invasive Campylobacter jejuni. PMID:26603914
Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach. PMID:26599979
Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel. PMID:26594310
Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter. PMID:26587357
First Draft Genome Sequence of the Acidovorax caeni sp. nov. Type Strain R-24608 (DSM 19327). PMID:26586902
Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes). PMID:26586901
Draft Genome Sequence of Bacillus safensis JPL-MERTA-8-2, Isolated from a Mars-Bound Spacecraft. PMID:26586895
Complete Genome Sequence of Potential Probiotic Lactobacillus sp. HFC8, Isolated from Human Gut Using PacBio SMRT Sequencing. PMID:26586884
Draft Genome Sequences of Two South African Bacillus anthracis Strains. PMID:26586878
Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado. PMID:26586867
Prevalence of extended-spectrum cephalosporin-resistant Escherichia coli in a farrowing farm: ST1121 clone harboring IncHI2 plasmid contributes to the dissemination of bla CMY-2. PMID:26579110
Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica. PMID:26579075
The Complete Genome Sequence of the Emerging Pathogen Mycobacterium haemophilum Explains Its Unique Culture Requirements. PMID:26578674
Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria. PMID:26574687
Characterization of the Antimicrobial Peptide Penisin, a Class Ia Novel Lantibiotic from Paenibacillus sp. Strain A3. PMID:26574006
Comparative Genomics of the Genus Porphyromonas Identifies Adaptations for Heme Synthesis within the Prevalent Canine Oral Species Porphyromonas cangingivalis. PMID:26568374
Comparative Genomics of cpn60-Defined Enterococcus hirae Ecotypes and Relationship of Gene Content Differences to Competitive Fitness. PMID:26566933
Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg. PMID:26566422
Complete genome sequence of bacteriophage P8625, the first lytic phage that infects Verrucomicrobia. PMID:26566421
High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1. PMID:26566420
Complete Genome Sequence of the Drug-Naive Classical Staphylococcus aureus Strain FDA209P. PMID:26564052
Draft Genome Sequence of the Intermediate Rough Vaccine Strain Brucella abortus S19Δper Mutant. PMID:26564050
Draft Genome Sequence of Halostagnicola sp. A56, an Extremely Halophilic Archaeon Isolated from the Andaman Islands. PMID:26564049
Genome Sequence of Hydrocarbon-Degrading Cronobacter sp. Strain DJ34 Isolated from Crude Oil-Containing Sludge from the Duliajan Oil Fields, Assam, India. PMID:26564043
Draft Genome Sequence of Bacillus tequilensis Strain FJAT-14262a. PMID:26564040
Draft Genome Sequence of Bacillus amyloliquefaciens XK-4-1, a Plant Growth-Promoting Endophyte with Antifungal Activity. PMID:26564038
A Novel Member of Chitinophagaceae Isolated from a Human Peritoneal Tumor. PMID:26564036
Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhi Isolate B/SF/13/03/195 Associated with a Typhoid Carrier in Pasir Mas, Kelantan, Malaysia. PMID:26564035
Complete genome sequence of Paracoccus marcusii phage vB_PmaS-R3 isolated from the South China Sea. PMID:26561517
Genome Characteristics of a Novel Type I Methanotroph (Sn10-6) Isolated from a Flooded Indian Rice Field. PMID:26547566
Draft Genome Sequence of "Candidatus Liberibacter asiaticus" from Diaphorina citri in Guangdong, China. PMID:26543132
Genome Assembly of Chryseobacterium polytrichastri ERMR1:04, a Psychrotolerant Bacterium with Cold Active Proteases, Isolated from East Rathong Glacier in India. PMID:26543128
Whole-Genome Sequence of Leptospira interrogans Serovar Hardjo Subtype Hardjoprajitno Strain Norma, Isolated from Cattle in a Leptospirosis Outbreak in Brazil. PMID:26543126
Genome Sequence of a Potential Probiotic Strain, Lactobacillus fermentum HFB3, Isolated from a Human Gut. PMID:26543124
Complete Genome Sequence of the Human Gut Symbiont Roseburia hominis. PMID:26543119
Whole-Genome Sequence of "Candidatus Profftella armatura" from Diaphorina citri in Guangdong, China. PMID:26543117
Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria). PMID:26543114
Complete Genome Sequence of Multidrug-Resistant Clinical Isolate Mycobacterium tuberculosis 187.0, Used To Study the Effect of Drug Susceptibility Reversion by the New Medicinal Drug FS-1. PMID:26543112
Genome Sequence of Type Strain Lysinibacillus macroides DSM 54T. PMID:26543111
Whole-Genome Sequences of Mycobacterium bovis Strain MbURU-001, Isolated from Fresh Bovine Infected Samples. PMID:26543108
Complete Genome Sequence of Bartonella ancashensis Strain 20.00, Isolated from the Blood of a Patient with Verruga Peruana. PMID:26543106
Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas. PMID:26531162
MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. PMID:26527720
Divergence between the Highly Virulent Zoonotic Pathogen Helicobacter heilmannii and Its Closest Relative, the Low-Virulence "Helicobacter ailurogastricus" sp. nov. PMID:26527212
A Branch Point of Streptomyces Sulfur Amino Acid Metabolism Controls the Production of Albomycin. PMID:26519385
Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains. PMID:26519161
Draft genome sequence of Bacillus thuringiensis 147, a Brazilian strain with high insecticidal activity. PMID:26517667
Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests. PMID:26516374
Complete Genome Sequence of Herbaspirillum hiltneri N3 (DSM 17495), Isolated from Surface-Sterilized Wheat Roots. PMID:26514770
Complete Genome Sequence of Methicillin-Resistant Staphylococcus schleiferi Strain TSCC54 of Canine Origin. PMID:26514766
Draft Genome Sequences of Two New Zealand Xanthomonas campestris pv. campestris Isolates, ICMP 4013 and ICMP 21080. PMID:26514760
Enzymatic Degradation of Phenazines Can Generate Energy and Protect Sensitive Organisms from Toxicity. PMID:26507234
Characterization, Genome Sequence, and Analysis of Escherichia Phage CICC 80001, a Bacteriophage Infecting an Efficient L-Aspartic Acid Producing Escherichia coli. PMID:26501200
Anvi'o: an advanced analysis and visualization platform for 'omics data. PMID:26500826
Complete genome sequences of bacteriophages P12002L and P12002S, two lytic phages that infect a marine Polaribacter strain. PMID:26500718
Comparative Phosphoproteomics Reveals the Role of AmpC β-lactamase Phosphorylation in the Clinical Imipenem-resistant Strain Acinetobacter baumannii SK17. PMID:26499836
Draft Genome Sequence of Achromobacter sp. Strain DMS1, Capable of Degrading Polyaromatic Hydrocarbons Isolated from the Industrially Perturbed Environment of Amlakhadi Canal, India. PMID:26494688
Genome Sequence of Type Strain Bacillus decisifrondis E5HC-32T (DSM 11725T), Isolated from Soil Underlying the Decaying Leaf Litter of a Slash Pine Forest. PMID:26494684
Draft Genome Sequence of Chlamydia trachomatis Strain 54, Isolated from the Urogenital Tract of a Male in Japan. PMID:26494683
Draft Genome Sequence of Burkholderia cordobensis Type Strain LMG 27620, Isolated from Agricultural Soils in Argentina. PMID:26494680
Draft Genome Sequence of Cellulolytic and Xylanolytic Paenibacillus sp. A59, Isolated from Decaying Forest Soil from Patagonia, Argentina. PMID:26494679
Draft Genome Sequence of Sporosarcina globispora W 25T (DSM 4), a Psychrophilic Bacterium Isolated from Soil and River Water. PMID:26494677
Draft Genome Sequence of Bacillus murimartini LMG 21005T, an Alkalitolerant Bacterium Isolated from a Church Wall Mural in Germany. PMID:26494676
Genome Sequence of Bacillus butanolivorans K9T (DSM 18926), an n-Butanol-Consuming Bacterium Isolated from Soil. PMID:26494675
High-Quality Draft Genome Sequence of Aneurinibacillus migulanus ATCC 9999T (DSM 2895), a Gramicidin S-Producing Bacterium Isolated from Garden Soil. PMID:26494674
Draft Genome Sequence of the Enteropathogenic Bacterium Campylobacter jejuni Strain cj255. PMID:26494669
Genome Sequence of Flavobacterium akiainvivens IK-1T, Isolated from Decaying Wikstroemia oahuensis, an Endemic Hawaiian Shrub. PMID:26494668
First Draft Genome Sequence of Salmonella enterica Serovar Gallinarum Strain VTCCBAA614, Isolated from Chicken in India. PMID:26494667
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas stutzeri KF716 (NBRC 110668). PMID:26494664
Genome Sequence of "Candidatus Thioglobus autotrophica" Strain EF1, a Chemoautotroph from the SUP05 Clade of Marine Gammaproteobacteria. PMID:26494660
Genome Sequence of "Candidatus Thioglobus singularis" Strain PS1, a Mixotroph from the SUP05 Clade of Marine Gammaproteobacteria. PMID:26494659
Genome Sequence of Paenibacillus sp. Strain FJAT-28004 for the Genome Sequencing Project for Genomic Taxonomy and Phylogenomics of Bacillus-Like Bacteria. PMID:26494657
Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates. PMID:26484663
Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25. PMID:26484278
High-quality complete genome sequence of Microbacterium sp. SUBG005, a plant pathogen. PMID:26484276
Draft genome sequence of Paenibacillus algorifonticola sp. nov., an antimicrobial-producing strain. PMID:26484273
Draft genome sequence of Paenibacillus dauci sp. nov., a carrot-associated endophytic actinobacteria. PMID:26484263
Isolation of chitinolytic Clostridium sp. NCR from Mehsani buffalo rumen, its genomic analysis and potential role in rumen. PMID:26484236
Genome sequencing and annotation of Cellulomonas sp. HZM. PMID:26484221
Genome sequencing and annotation of Aeromonas sp. HZM. PMID:26484220
High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine. PMID:26484219
Comparative genomic analysis and phenazine production of Pseudomonas chlororaphis, a plant growth-promoting rhizobacterium. PMID:26484173
Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T). PMID:26484067
Genome sequencing, annotation of Citrobacter freundii strain GTC 09479. PMID:26484065
Genome sequencing and annotation of Laceyella sacchari strain GS 1-1, isolated from hot spring, Chumathang, Leh, India. PMID:26484058
Genome sequencing and annotation of Amycolatopsis vancoresmycina strain DSM 44592(T). PMID:26484057
Genome sequencing and annotation of Acinetobacter junii strain MTCC 11364. PMID:26484056
Genome sequencing and annotation of Acinetobacter haemolyticus strain MTCC 9819(T). PMID:26484055
Genome sequencing and annotation of Acinetobacter gerneri strain MTCC 9824(T). PMID:26484054
Genome sequencing and annotation of Acinetobacter gyllenbergii strain MTCC 11365(T). PMID:26484053
Genome sequencing and annotation of Acinetobacter guillouiae strain MSP 4-18. PMID:26484052
Degradation of Benzene by Pseudomonas veronii 1YdBTEX2 and 1YB2 Is Catalyzed by Enzymes Encoded in Distinct Catabolism Gene Clusters. PMID:26475106
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Comamonas testosteroni KF712 (NBRC 110673). PMID:26472850
Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes). PMID:26472846
Draft Genome Sequence of Acinetobacter sp. Strain VT-511 Isolated from the Stomach of a Patient with Gastric Cancer. PMID:26472843
Draft Genome Sequence of the Pathogenic Bacterium Vibrio vulnificus V252 Biotype 1, Isolated in Israel. PMID:26472833
Draft Genome Sequences of Acinetobacter parvus CM11, Acinetobacter radioresistens CM38, and Stenotrophomonas maltophilia BR12, Isolated from Murine Proximal Colonic Tissue. PMID:26472823
Complete Genome Sequence of Thermus aquaticus Y51MC23. PMID:26465632
Isolation and characterization of a crude oil degrading bacteria from formation water: comparative genomic analysis of environmental Ochrobactrum intermedium isolate versus clinical strains. PMID:26465134
Genomic insight into Aquimarina longa SW024 T: its ultra-oligotrophic adapting mechanisms and biogeochemical functions. PMID:26459873
The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon "Geoglobus ahangari" strain 234(T). PMID:26457129
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data. PMID:26454280
The Dynamics of Genetic Interactions between Vibrio metoecus and Vibrio cholerae, Two Close Relatives Co-Occurring in the Environment. PMID:26454015
Draft Genome Sequence of a Diarrheagenic Morganella morganii Isolate. PMID:26450735
Draft Genome Sequence of Exiguobacterium sp. Strain BMC-KP, an Environmental Isolate from Bryn Mawr, Pennsylvania. PMID:26450734
Draft Genome Sequence of Enteropathogenic Escherichia coli, Isolated from the Bloody Stool Sample of a Common Marmoset (Callithrix jacchus). PMID:26450733
Draft Genome Sequences of Four Xanthomonas arboricola pv. juglandis Strains Associated with Walnut Blight in Chile. PMID:26450732
Whole-Genome Sequence of Pseudomonas putida Strain UASWS0946, a Highly Ammonia-Tolerant Nitrifying Bacterium Isolated from Sewage Sludge Aerobic Granules. PMID:26450728
Draft Genome Sequence of Streptomyces ahygroscopicus subsp. wuyiensis CK-15, Isolated from Soil in Fujian Province, China. PMID:26450721
Draft Genome Sequence of Campylobacter fetus MMM01, Isolated from a Chronic Kidney Disease Patient with Sepsis. PMID:26450717
Development of ListeriaBase and comparative analysis of Listeria monocytogenes. PMID:26444974
The bacterial pangenome as a new tool for analysing pathogenic bacteria. PMID:26442149
Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park. PMID:26442136
Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria. PMID:26441916
Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants. PMID:26438860
Complete Genome Sequence of Rothia mucilaginosa Strain NUM-Rm6536, Isolated from a Human Oral Cavity. PMID:26430041
Genome Sequence of Antibiotic-Producing Bacillus amyloliquefaciens Strain KCTC 13012. PMID:26430040
Draft Genome Sequence of Erwinia billingiae OSU19-1, Isolated from a Pear Tree Canker. PMID:26430039
Mining Genomes of Three Marine Sponge-Associated Actinobacterial Isolates for Secondary Metabolism. PMID:26430030
Draft Genome Sequence of Bacillus licheniformis S127, Isolated from a Sheep Udder Clinical Infection. PMID:26430024
Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance. PMID:26426997
Genome sequence of a native-feather degrading extremely thermophilic Eubacterium, Fervidobacterium islandicum AW-1. PMID:26421103
Novel Type XII Staphylococcal Cassette Chromosome mec Harboring a New Cassette Chromosome Recombinase, CcrC2. PMID:26416872
Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008. PMID:26413158
A virulent phage infecting Lactococcus garvieae, with homology to Lactococcus lactis phages. PMID:26407890
Draft Genome Sequence of Methicillin-Sensitive Staphylococcus aureus ATCC 29213. PMID:26404610
Draft Genome Sequence of Acetobacterium bakii DSM 8239, a Potential Psychrophilic Chemical Producer through Syngas Fermentation. PMID:26404601
Complete Genome Sequence of Pseudomonas aeruginosa Phage vB_PaeM_CEB_DP1. PMID:26404589
Draft Genome Sequences of Two Commensal Enterococcus cecorum Strains Isolated from Chickens in Belgium. PMID:26404586
Comparative genomics of non-pseudomonal bacterial species colonising paediatric cystic fibrosis patients. PMID:26401445
Isolation of a Novel Phage with Activity against Streptococcus mutans Biofilms. PMID:26398909
In Vivo Evolution of Bacterial Resistance in Two Cases of Enterobacter aerogenes Infections during Treatment with Imipenem. PMID:26398358
The Widespread Multidrug-Resistant Serotype O12 Pseudomonas aeruginosa Clone Emerged through Concomitant Horizontal Transfer of Serotype Antigen and Antibiotic Resistance Gene Clusters. PMID:26396243
Characterization of Tn3000, a Transposon Responsible for blaNDM-1 Dissemination among Enterobacteriaceae in Brazil, Nepal, Morocco, and India. PMID:26392506
The outer mucus layer hosts a distinct intestinal microbial niche. PMID:26392213
Complete genome sequence, metabolic model construction and phenotypic characterization of Geobacillus LC300, an extremely thermophilic, fast growing, xylose-utilizing bacterium. PMID:26391740
Characterization of carbapenem-resistant Acinetobacter baumannii isolates in a Chinese teaching hospital. PMID:26388854
Microbial diversity and activity in the Nematostella vectensis holobiont: insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression. PMID:26388838
Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli. PMID:26386055
Genome Sequence of Brevibacillus reuszeri NRRL NRS-1206T, an l-N-Carbamoylase-Producing Bacillus-Like Bacterium. PMID:26383671
Genome Sequence of Rough and Smooth Variants of Pleomorphic Strain Lactobacillus farciminis CNCM-I-3699. PMID:26383668
Genome Sequence of Rhizobium ecuadorense Strain CNPSo 671T, an Indigenous N2-Fixing Symbiont of the Ecuadorian Common Bean (Phaseolus vulgaris L.) Genetic Pool. PMID:26383667
Draft Genome Sequence of Non-Vibrio parahaemolyticus Acute Hepatopancreatic Necrosis Disease Strain KC13.17.5, Isolated from Diseased Shrimp in Vietnam. PMID:26383659
Genome Sequence of Bradyrhizobium pachyrhizi Strain PAC48T, a Nitrogen-Fixing Symbiont of Pachyrhizus erosus (L.) Urb. PMID:26383651
Genome Sequence of Virgibacillus pantothenticus DSM 26T (ATCC 14576), a Mesophilic and Halotolerant Bacterium Isolated from Soil. PMID:26383648
Draft-genome sequence of Shewanella algae strain C6G3. PMID:26380631
Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12. PMID:26380630
Abundant Atribacteria in deep marine sediment from the Adélie Basin, Antarctica. PMID:26379647
Characterization of the temperate phage vB_RleM_PPF1 and its site-specific integration into the Rhizobium leguminosarum F1 genome. PMID:26377943
Comparative genome-based identification of a cell wall-anchored protein from Lactobacillus plantarum increases adhesion of Lactococcus lactis to human epithelial cells. PMID:26370773
Comparative genomics between human and animal associated subspecies of the Mycobacterium avium complex: a basis for pathogenicity. PMID:26370227
16Stimator: statistical estimation of ribosomal gene copy numbers from draft genome assemblies. PMID:26359911
Draft Genome Sequence of the Beer Spoilage Bacterium Megasphaera cerevisiae Strain PAT 1T. PMID:26358606
Draft Genome Sequence of Type Strain Lysinibacillus xylanilyticus DSM 23493T. PMID:26358604
Genome Sequence of Streptomyces caatingaensis CMAA 1322, a New Abiotic Stress-Tolerant Actinomycete Isolated from Dried Lake Bed Sediment in the Brazilian Caatinga Biome. PMID:26358601
Genome Sequences of Klebsiella variicola Isolates from Dairy Animals with Bovine Mastitis from Newfoundland, Canada. PMID:26358587
Pili-Induced Clustering of N. gonorrhoeae Bacteria. PMID:26355966
Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum. PMID:26347755
A novel bacteriophage cocktail reduces and disperses Pseudomonas aeruginosa biofilms under static and flow conditions. PMID:26347362
Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw. PMID:26343383
Bacillus thermoamylovorans Spores with Very-High-Level Heat Resistance Germinate Poorly in Rich Medium despite the Presence of ger Clusters but Efficiently upon Exposure to Calcium-Dipicolinic Acid. PMID:26341201
Complete Genome Sequence of an Edwardsiella piscicida-Like Species, Recovered from Tilapia in the United States. PMID:26337892
Draft Genome Sequence of an Alphaproteobacterium Associated with the Mediterranean Sponge Oscarella lobularis. PMID:26337883
Draft Genome Sequence of Desulfocarbo indianensis SCBM, a New Genus of Sulfate-Reducing Bacteria, Isolated from Water Extracted from an Active Coalbed Methane Gas Well. PMID:26337881
Complete Genome Sequence of the Rhizobacterium Pseudomonas trivialis Strain IHBB745 with Multiple Plant Growth-Promoting Activities and Tolerance to Desiccation and Alkalinity. PMID:26337878
Draft Genome Sequence of the Shellfish Larval Probiotic Bacillus pumilus RI06-95. PMID:26337873
Comparison of a Real-Time Multiplex PCR and Sequetyping Assay for Pneumococcal Serotyping. PMID:26335454
Selective Sweeps and Parallel Pathoadaptation Drive Pseudomonas aeruginosa Evolution in the Cystic Fibrosis Lung. PMID:26330513
Genomic and Phenomic Study of Mammary Pathogenic Escherichia coli. PMID:26327312
Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis. PMID:26322033
Metabolic diversity and ecological niches of Achromatium populations revealed with single-cell genomic sequencing. PMID:26322031
Comparative analysis of multiple inducible phages from Mannheimia haemolytica. PMID:26318735
Functional Basis of Microorganism Classification. PMID:26317871
Extensive Genomic Diversity among Bovine-Adapted Staphylococcus aureus: Evidence for a Genomic Rearrangement within CC97. PMID:26317849
Draft Genome Sequence of Alteromonas macleodii Strain MIT1002, Isolated from an Enrichment Culture of the Marine Cyanobacterium Prochlorococcus. PMID:26316635
Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae. PMID:26313925
Genetic Adaptation of Achromobacter sp. during Persistence in the Lungs of Cystic Fibrosis Patients. PMID:26313451
Sinorhizobium meliloti Phage ΦM9 Defines a New Group of T4 Superfamily Phages with Unusual Genomic Features but a Common T=16 Capsid. PMID:26311868
Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing. PMID:26311863
It Is Not All about Single Nucleotide Polymorphisms: Comparison of Mobile Genetic Elements and Deletions in Listeria monocytogenes Genomes Links Cases of Hospital-Acquired Listeriosis to the Environmental Source. PMID:26311854
Campylobacter group II phage CP21 is the prototype of a new subgroup revealing a distinct modular genome organization and host specificity. PMID:26296758
Draft Genome Sequence of a Bacillus Bacterium from the Atacama Desert Wetlands Metagenome. PMID:26294639
Complete Genome Sequence of Prevotella intermedia Strain 17-2. PMID:26294638
Draft Genome Sequence of a Community-Associated Methicillin-Resistant Panton-Valentine Leukocidin-Positive Staphylococcus aureus Sequence Type 30 Isolate from a Pediatric Patient with a Lung Infection in Brazil. PMID:26294626
Draft Genome Sequence of Antarctic Pseudomonas sp. Strain KG01 with Full Potential for Biotechnological Applications. PMID:26294625
Draft Genome Sequence of Veillonella tobetsuensis ATCC BAA-2400T Isolated from Human Tongue Biofilm. PMID:26294617
Draft Genome Sequence of Pseudomonas sp. Strain LFM046, a Producer of Medium-Chain-Length Polyhydroxyalkanoate. PMID:26294616
Biocontrol mechanism by root-associated Bacillus amyloliquefaciens FZB42 - a review. PMID:26284057
Identification of iron and heme utilization genes in Aeromonas and their role in the colonization of the leech digestive tract. PMID:26284048
BEACON: automated tool for Bacterial GEnome Annotation ComparisON. PMID:26283419
Genome architecture of Lactobacillus plantarum PS128, a probiotic strain with potential immunomodulatory activity. PMID:26279684
Comparative genome analysis of Mycoplasma pneumoniae. PMID:26275904
Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus. PMID:26275815
Intraspecies Genomic Diversity and Long-Term Persistence of Bifidobacterium longum. PMID:26275230
Phage ΦPan70, a Putative Temperate Phage, Controls Pseudomonas aeruginosa in Planktonic, Biofilm and Burn Mouse Model Assays. PMID:26274971
Draft Genome Sequence of Bacillus pseudalcaliphilus PN-137T (DSM 8725), an Alkaliphilic Halotolerant Bacterium Isolated from Garden Soils. PMID:26272579
Draft Genome Sequence of the Picocyanobacterium Synechococcus sp. Strain GFB01, Isolated from a Freshwater Lagoon in the Brazilian Amazon. PMID:26272565
Genome Sequences of Three Oenococcus oeni Strains Isolated from Maipo Valley, Chile. PMID:26272563
Complete Genome Sequence of Bacillus amyloliquefaciens Strain Co1-6, a Plant Growth-Promoting Rhizobacterium of Calendula officinalis. PMID:26272562
Draft Genome Sequences of Ralstonia solanacearum Race 3 Biovar 2 Strains with Different Temperature Adaptations. PMID:26272559
Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase. PMID:26266751
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data. PMID:26261351
The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxin. PMID:26261348
Lineage-Specific Patterns of Genome Deterioration in Obligate Symbionts of Sharpshooter Leafhoppers. PMID:26260652
Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli. PMID:26258987
TAL effectors and activation of predicted host targets distinguish Asian from African strains of the rice pathogen Xanthomonas oryzae pv. oryzicola while strict conservation suggests universal importance of five TAL effectors. PMID:26257749
The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle. PMID:26257709
Phenotypic and Genotypic Characteristics of Members of the Genus Streptobacillus. PMID:26252790
Genomic analysis reveals the biotechnological and industrial potential of levan producing halophilic extremophile, Halomonas smyrnensis AAD6T. PMID:26251777
Draft Genome Sequence of Corynebacterium striatum 1961 BR-RJ/09, a Multidrug-Susceptible Strain Isolated from the Urine of a Hospitalized 37-Year-Old Female Patient. PMID:26251495
Draft Genome Sequence of Paenibacillus polymyxa Strain Mc5Re-14, an Antagonistic Root Endophyte of Matricaria chamomilla. PMID:26251493
Draft Genome Sequence of Streptomyces sp. Strain Wb2n-11, a Desert Isolate with Broad-Spectrum Antagonism against Soilborne Phytopathogens. PMID:26251492
Draft Genome Sequences of Burkholderia contaminans, a Burkholderia cepacia Complex Species That Is Increasingly Recovered from Cystic Fibrosis Patients. PMID:26251482
Identification and genomic analysis of a novel member of Microviridae, IME-16, through high-throughput sequencing. PMID:26242376
Marinobacter subterrani, a genetically tractable neutrophilic Fe(II)-oxidizing strain isolated from the Soudan Iron Mine. PMID:26236300
A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota. PMID:26230489
Draft Genome Sequence of Shiga Toxin-Producing Escherichia coli Strain D92/09. PMID:26227593
'Candidatus Phytoplasma phoenicium' associated with almond witches'-broom disease: from draft genome to genetic diversity among strain populations. PMID:26223451
High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae. PMID:26221418
Genomically Informed Surveillance for Carbapenem-Resistant Enterobacteriaceae in a Health Care System. PMID:26220969
Draft Genome Sequence of Environmental Bacterium Vibrio vulnificus CladeA-yb158. PMID:26205875
Genome Sequence of Brevibacillus formosus F12T for a Genome-Sequencing Project for Genomic Taxonomy and Phylogenomics of Bacillus-Like Bacteria. PMID:26205874
Complete Genome Sequence of an Edwardsiella piscicida-Like Species Isolated from Diseased Grouper in Israel. PMID:26205870
Draft Genome Sequence of the Biofilm-Hyperproducing Acinetobacter baumannii Clinical Strain MAR002. PMID:26205868
Draft Genome Sequence of Caprolactam-Degrading Pseudomonas putida Strain SJ3. PMID:26205864
Complete Genome Sequence of Escherichia coli Strain RS218 (O18:H7:K1), Associated with Neonatal Meningitis. PMID:26205862
A Novel Quality Measure and Correction Procedure for the Annotation of Microbial Translation Initiation Sites. PMID:26204119
Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark. PMID:26203344
Complete genome sequence of Salmonella enterica subspecies arizonae str. RKS2983. PMID:26203341
Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota. PMID:26203339
Quantification of Azospirillum brasilense FP2 Bacteria in Wheat Roots by Strain-Specific Quantitative PCR. PMID:26187960
Genome sequence and comparative analysis of a putative entomopathogenic Serratia isolated from Caenorhabditis briggsae. PMID:26187596
Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer. PMID:26185097
Draft Genomes, Phylogenetic Reconstruction, and Comparative Genomics of Two Novel Cohabiting Bacterial Symbionts Isolated from Frankliniella occidentalis. PMID:26185096
Draft Genome Sequence of a Novel Nicotine-Degrading Bacterium, Pseudomonas plecoglossicida TND35. PMID:26184952
Draft Genome Sequence of Pseudomonas frederiksbergensis SI8, a Psychrotrophic Aromatic-Degrading Bacterium. PMID:26184950
Complete Genome Sequence of Noninvasive Streptococcus pyogenes M/emm28 Strain STAB10015, Isolated from a Child with Perianal Dermatitis in French Brittany. PMID:26184948
Genome Sequence of Paenibacillus wulumuqiensis sp. nov., a Bioflocculant-Producing Species. PMID:26184946
Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain 12C. PMID:26184935
Draft Genome Sequence of Geobacillus sp. Isolate T6, a Thermophilic Bacterium Collected from a Thermal Spring in Argentina. PMID:26184933
Complete Genome Sequences of Four Novel Escherichia coli Bacteriophages Belonging to New Phage Groups. PMID:26184932
Gene Loss Dominates As a Source of Genetic Variation within Clonal Pathogenic Bacterial Species. PMID:26163675
Draft Genome Sequences of the Two Unrelated Macrolide-Resistant Corynebacterium argentoratense Strains CNM 463/05 and CNM 601/08, Isolated from Patients in the University Hospital of León, Spain. PMID:26159536
Metagenomic Assembly and Draft Genome Sequence of an Uncharacterized Prevotella sp. from Nelore Rumen. PMID:26159527
Draft Genome Sequence of Streptomyces incarnatus NRRL8089, which Produces the Nucleoside Antibiotic Sinefungin. PMID:26159526
Draft Genome Sequence of a Natural Root Isolate, Bacillus subtilis UD1022, a Potential Plant Growth-Promoting Biocontrol Agent. PMID:26159522
Draft Genome Sequence of a Highly Virulent Rabbit Staphylococcus aureus Strain. PMID:26159520
GenomePeek-an online tool for prokaryotic genome and metagenome analysis. PMID:26157610
Antibiotic Resistant and Virulence Determinants of Staphylococcus haemolyticus C10A as Revealed by Whole Genome Sequencing. PMID:26157506
The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat. PMID:26157428
Genomics and Ecophysiology of Heterotrophic Nitrogen-Fixing Bacteria Isolated from Estuarine Surface Water. PMID:26152586
Haemophilus ducreyi Cutaneous Ulcer Strains Are Nearly Identical to Class I Genital Ulcer Strains. PMID:26147869
Whole-Genome Sequence of Multidrug-Resistant Staphylococcus caprae Strain 9557, Isolated from Cerebrospinal Fluid. PMID:26139720
Complete Genome Sequence of Rhodococcus sp. Strain IcdP1 Shows Diverse Catabolic Potential. PMID:26139718
Hyper Accumulation of Arsenic in Mutants of Ochrobactrum tritici Silenced for Arsenite Efflux Pumps. PMID:26132104
Pan-Genome Analysis of Brazilian Lineage A Amoebal Mimiviruses. PMID:26131958
Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies. PMID:26125026
The Streptomyces leeuwenhoekii genome: de novo sequencing and assembly in single contigs of the chromosome, circular plasmid pSLE1 and linear plasmid pSLE2. PMID:26122045
Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire. PMID:26115051
Draft Genome Sequence of the Streptococcus pneumoniae Avery Strain A66. PMID:26112793
Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CRL871, a Folate-Producing Strain Isolated from a Northwestern Argentinian Yogurt. PMID:26112792
Whole-Genome Sequencing of Brevundimonas diminuta XGC1, Isolated from a Tuberculosis Patient in Gujarat, India. PMID:26112790
Whole-Genome Sequences of 15 Strains of Staphylococcus aureus subsp. aureus Isolated from Foodstuff and Human Clinical Samples. PMID:26112789
Complete Genome Sequence of Edwardsiella tarda Isolate FL95-01, Recovered from Channel Catfish. PMID:26112788
Characterization of the molecular degradation mechanism of diphenyl ethers by Cupriavidus sp. WS. PMID:26109219
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome. PMID:26102287
Analysis of Multiple Brachyspira hyodysenteriae Genomes Confirms That the Species Is Relatively Conserved but Has Potentially Important Strain Variation. PMID:26098837
Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park. PMID:26092468
A Transmissible Plasmid-Borne Pathogenicity Island Confers Piscibactin Biosynthesis in the Fish Pathogen Photobacterium damselae subsp. piscicida. PMID:26092457
Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics. PMID:26090992
Genome Sequence of Rhizobacterium Serratia marcescens Strain 90-166, Which Triggers Induced Systemic Resistance and Plant Growth Promotion. PMID:26089427
Draft Genome Sequence of Bacillus coagulans NL01, a Wonderful l-Lactic Acid Producer. PMID:26089419
Draft Genome Sequence of the First Human Isolate of the Ruminant Pathogen Mycoplasma capricolum subsp. capricolum. PMID:26089408
Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens. PMID:26083489
Microbial bioinformatics for food safety and production. PMID:26082168
Characterization of Three Mycobacterium spp. with Potential Use in Bioremediation by Genome Sequencing and Comparative Genomics. PMID:26079817
Draft Genome Sequence of Antimicrobial-Producing Clostridium sp. JC272, Isolated from Marine Sediment. PMID:26067979
Draft Genome Sequence of Microbacterium profundi Shh49T, an Actinobacterium Isolated from Deep-Sea Sediment of a Polymetallic Nodule Environment. PMID:26067975
Draft Genome Sequence of Gerbil-Adapted Carcinogenic Helicobacter pylori Strain 7.13. PMID:26067974
Complete Genome Sequence of Listeria monocytogenes Strain DPC6895, a Serotype 1/2b Isolate from Bovine Raw Milk. PMID:26067969
Genome Sequence of Lactobacillus rhamnosus Strain CNCM I-3698. PMID:26067954
Draft Genome Sequence of Paenibacillus sp. Strain DMB20, Isolated from Alang Ship-Breaking Yard, Which Harbors Genes for Xenobiotic Degradation. PMID:26067950
Microbial and biochemical basis of a Fusarium wilt-suppressive soil. PMID:26057845
Implications of Genome-Based Discrimination between Clostridium botulinum Group I and Clostridium sporogenes Strains for Bacterial Taxonomy. PMID:26048939
Correlation of Lactobacillus rhamnosus Genotypes and Carbohydrate Utilization Signatures Determined by Phenotype Profiling. PMID:26048937
Quantitative frame analysis and the annotation of GC-rich (and other) prokaryotic genomes. An application to Anaeromyxobacter dehalogenans. PMID:26048600
Draft Genome Sequence of Rice Endophyte-Associated Isolate Kosakonia oryzae KO348. PMID:26044436
Genome Sequence of the Potato Plant Pathogen Dickeya dianthicola Strain RNS04.9. PMID:26044429
Draft Genome Sequences of Pseudomonas aeruginosa Strain PS3 and Citrobacter freundii Strain SA79 Obtained from a Wound Dressing-Associated Biofilm. PMID:26044421
Draft Genome Sequence of Pseudomonas syringae pv. persicae NCPPB 2254. PMID:26044420
Sequence-based Network Completion Reveals the Integrality of Missing Reactions in Metabolic Networks. PMID:26041773
A novel salt-tolerant chitobiosidase discovered by genetic screening of a metagenomic library derived from chitin-amended agricultural soil. PMID:26040993
Comparative genomic analysis of Brucella abortus vaccine strain 104M reveals a set of candidate genes associated with its virulence attenuation. PMID:26039674
Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum. PMID:26039056
Identification and characterization of a novel incompatibility group X3 plasmid carrying bla NDM-1 in Enterobacteriaceae isolates with epidemiological links to multiple geographical areas in China. PMID:26038408
Lifestyle evolution in cyanobacterial symbionts of sponges. PMID:26037118
Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34melT. PMID:26025898
Complete Genome Sequence of Microcystis aeruginosa NIES-2549, a Bloom-Forming Cyanobacterium from Lake Kasumigaura, Japan. PMID:26021928
Genome Anatomy of Streptococcus parasanguinis Strain C1A, Isolated from a Patient with Acute Exacerbation of Chronic Obstructive Pulmonary Disease, Reveals Unusual Genomic Features. PMID:26021924
Whole-Genome Sequence of Serratia liquefaciens HUMV-21, a Cytotoxic, Quorum-Sensing, and Biofilm-Producing Clinical Isolate. PMID:26021922
Draft Genome Sequence of Aneurinibacillus tyrosinisolvens LL-002T, Which Possesses Some Pseudouridine Synthases. PMID:26021921
Draft Genome Sequence of Enterohemorrhagic Escherichia coli O157 NCCP15739, Isolated in the Republic of Korea. PMID:26021919
Draft Genome Sequence of Bacillus sp. Strain CMAA 1185, a Cellullolytic Bacterium Isolated from Stain House Lake, Antarctic Peninsula. PMID:26021916
Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing. PMID:26019201
Complete Genome Sequence and Transcriptomic Analysis of the Novel Pathogen Elizabethkingia anophelis in Response to Oxidative Stress. PMID:26019164
Diversity of acid stress resistant variants of Listeria monocytogenes and the potential role of ribosomal protein S21 encoded by rpsU. PMID:26005439
Genome Sequence of Cronobacter sakazakii Serogroup O:4, Sequence Type 4 Strain CDC 2009-03746, Isolated from a Fatal Case of Infantile Meningitis. PMID:25999578
Genome Sequence of Mycoplasma meleagridis Type Strain 17529. PMID:25999574
Genome Sequence of Lactococcus lactis subsp. cremoris Mast36, a Strain Isolated from Bovine Mastitis. PMID:25999570
Draft Genome Sequence of Rhodococcus sp. Strain 311R. PMID:25999565
Draft Genome Sequences of Corynebacterium kroppenstedtii CNM633/14 and CNM632/14, Multidrug-Resistant and Antibiotic-Sensitive Isolates from Nodules of Granulomatous Mastitis Patients. PMID:25999560
Draft Genome Sequence of Aeromonas caviae 8LM, Isolated from Stool Culture of a Child with Diarrhea. PMID:25999559
Complete Genome Sequence of Pseudomonas aeruginosa Strain 8380, Isolated from the Human Gut. PMID:25999558
Draft Genome Sequence of Pseudomonas aeruginosa KF702 (NBRC 110665), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil. PMID:25999557
Genome sequences of the Shiga-like toxin-producing Escherichia coli NCCP15655 and NCCP15656. PMID:25991925
Molecular mechanisms underlying the close association between soil Burkholderia and fungi. PMID:25989372
Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics. PMID:25983722
Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist. PMID:25979941
Comparative Analysis of Denitrifying Activities of Hyphomicrobium nitrativorans, Hyphomicrobium denitrificans, and Hyphomicrobium zavarzinii. PMID:25979892
Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. PMID:25977791
Phylogenomic Analysis of Oenococcus oeni Reveals Specific Domestication of Strains to Cider and Wines. PMID:25977455
Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil. PMID:25977441
Draft Genome Sequence of Staphylococcus carnosus subsp. utilis LTH 7013, Isolated from South Tyrolean Ham. PMID:25977432
Draft Genome Sequence of Burkholderia andropogonis Type Strain ICMP2807, Isolated from Sorghum bicolor. PMID:25977431
Whole-Genome Sequence of Aquamicrobium sp. Strain SK-2, a Polychlorinated Biphenyl-Utilizing Bacterium Isolated from Sewage Sludge. PMID:25977427
Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site. PMID:25977418
Draft Genome Sequence of Pantoea anthophila Strain 11-2 from Hypersaline Lake Laysan, Hawaii. PMID:25977417
Genomes of sequence type 121 Listeria monocytogenes strains harbor highly conserved plasmids and prophages. PMID:25972859
Environmentally co-occurring mercury resistance plasmids are genetically and phenotypically diverse and confer variable context-dependent fitness effects. PMID:25969927
What caused the outbreak of ESBL-producing Klebsiella pneumoniae in a neonatal intensive care unit, Germany 2009 to 2012? Reconstructing transmission with epidemiological analysis and whole-genome sequencing. PMID:25967999
Genetic profiles of Propionibacterium acnes and identification of a unique transposon with novel insertion sequences in sarcoid and non-sarcoid isolates. PMID:25966054
Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. PMID:25964331
Lactococcus garvieae: a small bacteria and a big data world. PMID:25960872
Genomic and proteomic evidences unravel the UV-resistome of the poly-extremophile Acinetobacter sp. Ver3. PMID:25954258
Insights on Quorum-Quenching Properties of Lysinibacillus fusiformis Strain RB21, a Malaysian Municipal Solid-Waste Landfill Soil Isolate, via Complete Genome Sequence Analysis. PMID:25953192
Draft Genome Sequence of Se(IV)-Reducing Bacterium Pseudomonas migulae ES3-33. PMID:25953191
Draft Genome Sequence of Arthrobacter chlorophenolicus Strain Mor30.16, Isolated from the Bean Rhizosphere. PMID:25953176
Draft Genome Sequence of the Polyhydroxyalkanoate-Producing Bacterium Burkholderia sacchari LMG 19450 Isolated from Brazilian Sugarcane Plantation Soil. PMID:25953171
Complete Genome Sequence of Biocontrol Strain Pseudomonas fluorescens LBUM223. PMID:25953163
Draft Genome Sequence of Brucella abortus Virulent Strain 544. PMID:25953161
Development of a comparative genomic fingerprinting assay for rapid and high resolution genotyping of Arcobacter butzleri. PMID:25947176
High quality draft genome sequence of the heavy metal resistant bacterium Halomonas zincidurans type strain B6(T). PMID:25945155
Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations. PMID:25944863
The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign. PMID:25942006
Mutations associated with reduced surotomycin susceptibility in Clostridium difficile and Enterococcus species. PMID:25941217
Draft genomes of four enterotoxigenic Escherichia coli (ETEC) clinical isolates from China and Bangladesh. PMID:25932050
Draft Genome Sequence of Isolate Staphylococcus aureus LHSKBClinical, Isolated from an Infected Hip. PMID:25931597
Complete Genome Sequence of Rhodococcus sp. B7740, a Carotenoid-Producing Bacterium Isolated from the Arctic Sea. PMID:25931596
Draft Genome Sequence of Clostridium aceticum DSM 1496, a Potential Butanol Producer through Syngas Fermentation. PMID:25931594
Unravelling the genome of long chain N-acylhomoserine lactone-producing Acinetobacter sp. strain GG2 and identification of its quorum sensing synthase gene. PMID:25926817
The Clostridium difficile Protease Cwp84 Modulates both Biofilm Formation and Cell-Surface Properties. PMID:25922949
A rural worker infected with a bovine-prevalent genotype of Campylobacter fetus subsp. fetus supports zoonotic transmission and inconsistency of MLST and whole-genome typing. PMID:25920493
Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions. PMID:25914678
Chondroitin Lyase from a Marine Arthrobacter sp. MAT3885 for the Production of Chondroitin Sulfate Disaccharides. PMID:25912370
Draft genome sequence of a novel culturable marine chroococcalean cyanobacterium from the South atlantic ocean. PMID:25908150
Complete Genome Sequence of Paenibacillus sp. Strain IHBB 10380 Using PacBio Single-Molecule Real-Time Sequencing Technology. PMID:25908145
Complete Genome Sequencing of Protease-Producing Novel Arthrobacter sp. Strain IHBB 11108 Using PacBio Single-Molecule Real-Time Sequencing Technology. PMID:25908143
Whole-Genome Sequences of Eight Campylobacter jejuni Isolates from Wild Birds. PMID:25908133
Virulence related sequences; insights provided by comparative genomics of Streptococcus uberis of differing virulence. PMID:25898893
Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite. PMID:25898829
Isolation and characterization of a native avirulent strain of Streptococcus suis serotype 2: a perspective for vaccine development. PMID:25891917
Molecular epidemiological study of feline coronavirus strains in Japan using RT-PCR targeting nsp14 gene. PMID:25889235
Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis. PMID:25888688
Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool. PMID:25888298
Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs. PMID:25888127
Draft Genome Sequence of the Biofilm-Forming Stenotrophomonas maltophilia Strain 53. PMID:25883296
Draft Genome Sequences of Marine Isolates of Thalassomonas viridans and Thalassomonas actiniarum. PMID:25883295
Draft Genome Sequence of Bacillus amyloliquefaciens AP183 with Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus. PMID:25883273
Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment. PMID:25880122
Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria. PMID:25879706
Resistance Genes and Genetic Elements Associated with Antibiotic Resistance in Clinical and Commensal Isolates of Streptococcus salivarius. PMID:25862227
Distinct Commensals Induce Interleukin-1β via NLRP3 Inflammasome in Inflammatory Monocytes to Promote Intestinal Inflammation in Response to Injury. PMID:25862092
Comparative genomic analysis identifies divergent genomic features of pathogenic Enterococcus cecorum including a type IC CRISPR-Cas system, a capsule locus, an epa-like locus, and putative host tissue binding proteins. PMID:25860249
Transcriptomic analysis of three Veillonella spp. present in carious dentine and in the saliva of caries-free individuals. PMID:25859434
Draft Genome Sequence of the Piezotolerant and Crude Oil-Degrading Bacterium Rhodococcus qingshengii Strain TUHH-12. PMID:25858843
Draft Genome Sequence of Shewanella sp. Strain CP20. PMID:25858840
Draft Genome Sequences for Canadian Isolates of Pectobacterium carotovorum subsp. brasiliense with Weak Virulence on Potato. PMID:25858837
Draft genome sequences of 26 porphyromonas strains isolated from the canine oral microbiome. PMID:25858832
Draft Genome Sequences of Supercritical CO2-Tolerant Bacteria Bacillus subterraneus MITOT1 and Bacillus cereus MIT0214. PMID:25858826
Complete Genome Sequence of Mannheimia haemolytica Strain Mh10517, Isolated from Sheep in South Africa. PMID:25858825
Complete Genome Sequences of vB_LmoS_188 and vB_LmoS_293, Two Bacteriophages with Specificity for Listeria monocytogenes Strains of Serotypes 4b and 4e. PMID:25858822
A suggested new bacteriophage genus, "Kp34likevirus", within the Autographivirinae subfamily of Podoviridae. PMID:25853484
Characterization of multiple NDM-1-producing Enterobacteriaceae isolates from the same patient. PMID:25845877
Evaluation of Lactococcus lactis Isolates from Nondairy Sources with Potential Dairy Applications Reveals Extensive Phenotype-Genotype Disparity and Implications for a Revised Species. PMID:25841018
Genome of Rhizobium sp. UR51a, Isolated from Rice Cropped in Southern Brazilian Fields. PMID:25838497
Genome of Pseudomonas sp. FeS53a, a Putative Plant Growth-Promoting Bacterium Associated with Rice Grown in Iron-Stressed Soils. PMID:25838496
Whole-Genome Shotgun Sequence of the Keratinolytic Bacterium Lysobacter sp. A03, Isolated from the Antarctic Environment. PMID:25838495
Genome Sequence of Bacillus mycoides B38V, a Growth-Promoting Bacterium of Sunflower. PMID:25838494
Genome Sequence of Magnetospirillum magnetotacticum Strain MS-1. PMID:25838488
Draft Genome Sequence of Enterotoxigenic Escherichia coli Strain E24377A, Obtained from a Tribal Drinking Water Source in India. PMID:25838484
Draft Genome Sequence of Pseudomonas toyotomiensis KF710, a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil. PMID:25838482
High-Quality Draft Genome Sequence of Actinobacterium Kibdelosporangium sp. MJ126-NF4, Producer of Type II Polyketide Azicemicins, Using Illumina and PacBio Technologies. PMID:25838474
The Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile Is a New Strain of Pseudoalteromonas agarivorans Containing Abundant and Diverse Virulence-Related Genes. PMID:25837832
The N-Terminal GH10 Domain of a Multimodular Protein from Caldicellulosiruptor bescii Is a Versatile Xylanase/β-Glucanase That Can Degrade Crystalline Cellulose. PMID:25819971
Genome Sequence and Transcriptome Analysis of Meat-Spoilage-Associated Lactic Acid Bacterium Lactococcus piscium MKFS47. PMID:25819958
The Listeria monocytogenes strain 10403S BioCyc database. PMID:25819074
Draft Genome Sequence of Cupriavidus pauculus Strain KF709, a Biphenyl-Utilizing Bacterium Isolated from Biphenyl-Contaminated Soil. PMID:25814614
Draft Genome Sequence of Clostridium tyrobutyricum Strain DIVETGP, Isolated from Cow's Milk for Grana Padano Production. PMID:25814611
Draft Genome Sequence of the Deinococcus-Thermus Bacterium Meiothermus ruber Strain A. PMID:25814606
A novel pathway producing dimethylsulphide in bacteria is widespread in soil environments. PMID:25807229
Comparative genomics of a Helicobacter pylori isolate from a Chinese Yunnan Naxi ethnic aborigine suggests high genetic divergence and phage insertion. PMID:25799515
Complete Genome Sequence of SS52, a Strain of Escherichia coli O157:H7 Recovered from Supershedder Cattle. PMID:25792068
Whole-Genome Sequence of "Candidatus Liberibacter asiaticus" from a Huanglongbing-Affected Citrus Tree in Central Florida. PMID:25792067
Refinement of whole-genome multilocus sequence typing analysis by addressing gene paralogy. PMID:25788543
Isolation and identification of a gene encoding 4-hydroxyphenylpyruvate dioxygenase from the red-brown pigment-producing bacterium Alteromonas stellipolaris LMG 21856. PMID:25787019
Non-contiguous finished genome sequence and description of Clostridium saudii sp. nov. PMID:25780501
The Caulobacter crescentus transducing phage Cr30 is a unique member of the T4-like family of myophages. PMID:25773204
Draft Genome Sequences of Five Spore-Forming Food Isolates of Bacillus pumilus. PMID:25767247
Genome Sequence of Corynebacterium ulcerans Strain FRC11. PMID:25767241
Genome Sequence Analysis Reveals Evidence of Quorum-Sensing Genes Present in Aeromonas hydrophila Strain M062, Isolated from Freshwater. PMID:25767237
Draft Genome Sequences of Vibrio renopiscarius Strains CECT 8603T and CECT 8604, Two Marine Gammaproteobacteria Isolated from Cultured Gilthead Sea Bream (Sparus aurata). PMID:25767236
Draft Genome Sequence of Lactobacillus plantarum Lp90 Isolated from Wine. PMID:25767234
Draft Genome Sequence of Nocardia seriolae Strain N-2927 (NBRC 110360), Isolated as the Causal Agent of Nocardiosis of Yellowtail (Seriola quinqueradiata) in Kochi Prefecture, Japan. PMID:25767227
Draft Genome Sequences of Clostridium tyrobutyricum Strains FAM22552 and FAM22553, Isolated from Swiss Semihard Red-Smear Cheese. PMID:25767226
Complete Genome Sequence of Paenibacillus polymyxa Strain Sb3-1, a Soilborne Bacterium with Antagonistic Activity toward Plant Pathogens. PMID:25767224
Draft Genome Sequence of Halomonas sp. KHS3, a Polyaromatic Hydrocarbon-Chemotactic Strain. PMID:25767220
High correlation between genotypes and phenotypes of environmental bacteria Comamonas testosteroni strains. PMID:25766446
Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment. PMID:25756680
Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes. PMID:25755651
Draft Genome Sequence of Streptococcus equinus (Streptococcus bovis) HC5, a Lantibiotic Producer from the Bovine Rumen. PMID:25745007
Genome Sequences of Five Disinfectant-Resistant Listeria monocytogenes Strains from Two Iberian Pork-Processing Plants. PMID:25745005
Draft Genome Sequence of "Terrisporobacter othiniensis" Isolated from a Blood Culture from a Human Patient. PMID:25744994
Genome Sequence of Pseudomonas azelaica Strain Aramco J. PMID:25744991
Genome Sequence of Clostridium acetobutylicum GXAS18-1, a Novel Biobutanol Production Strain. PMID:25744989
Comparative genome analysis of non-toxigenic non-O1 versus toxigenic O1 Vibrio cholerae. PMID:25722857
Insights from 20 years of bacterial genome sequencing. PMID:25722247
Web resources for microbial data. PMID:25721609
Draft Genome Sequence of Pantoea sp. Strain MBLJ3, Isolated in a Laboratory Environmental Control Study. PMID:25720687
An event-driven approach for studying gene block evolution in bacteria. PMID:25717195
Insights on the emergence of Mycobacterium tuberculosis from the analysis of Mycobacterium kansasii. PMID:25716827
De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape. PMID:25709557
Adaptation, ecology, and evolution of the halophilic stromatolite archaeon Halococcus hamelinensis inferred through genome analyses. PMID:25709556
Draft Genome Sequence of Pseudoalteromonas luteoviolacea HI1, Determined Using Roche 454 and PacBio Single-Molecule Real-Time Hybrid Sequencing. PMID:25700414
Draft Genome Sequence of a Cellulase-Producing Psychrotrophic Paenibacillus Strain, IHB B 3415, Isolated from the Cold Environment of the Western Himalayas, India. PMID:25700411
Draft Genome Sequence of Xanthomonas arboricola Strain 3004, a Causal Agent of Bacterial Disease on Barley. PMID:25700410
Genome Sequence of Bradyrhizobium japonicum E109, One of the Most Agronomically Used Nitrogen-Fixing Rhizobacteria in Argentina. PMID:25700406
Whole-Genome Sequencing Analysis of Quorum-Sensing Aeromonas hydrophila Strain M023 from Freshwater. PMID:25700404
Metagenomic evaluation of bacterial and archaeal diversity in the geothermal hot springs of manikaran, India. PMID:25700403
Analysis of Quorum-Sensing Pantoea stewartii Strain M073A through Whole-Genome Sequencing. PMID:25700398
Genome Sequence of Arthrobacter sp. MWB30, Isolated from a Crude Oil-Contaminated Seashore. PMID:25700396
Comparative genomic analysis of seven Mycoplasma hyosynoviae strains. PMID:25693846
Antibiotic-resistant Klebsiella pneumoniae and Escherichia coli high-risk clones and an IncFII(k) mosaic plasmid hosting Tn1 (blaTEM-4) in isolates from 1990 to 2004. PMID:25691645
Adhesive properties of YapV and paralogous autotransporter proteins of Yersinia pestis. PMID:25690102
Complete genome sequence of Roseophage vB_DshP-R1, which infects Dinoroseobacter shibae DFL12. PMID:25685262
Genome sequence and description of the mosquitocidal and heavy metal tolerant strain Lysinibacillus sphaericus CBAM5. PMID:25685257
Transoceanic spreading of pathogenic strains of Vibrio parahaemolyticus with distinctive genetic signatures in the recA gene. PMID:25679989
Draft Genome Sequence of Chemolithoautotrophic Acetogenic Butanol-Producing Eubacterium limosum ATCC 8486. PMID:25676768
Genomic Insights of Pectobacterium carotovorum Strain M022 Quorum-Sensing Activity through Whole-Genome Sequencing. PMID:25676763
Draft Genome Sequence of Anoxybacillus Strain BCO1, Isolated from a Thermophilic Microbial Mat Colonizing the Outflow of a Bore Well of the Great Artesian Basin of Australia. PMID:25676761
Metagenomics Reveals Planktonic Bacterial Community Shifts across a Natural CO2 Gradient in the Mediterranean Sea. PMID:25676760
Draft Genome Sequence of MCPA-Degrading Sphingomonas sp. Strain ERG5, Isolated from a Groundwater Aquifer in Denmark. PMID:25676756
Draft Genome Sequence and Annotation of the Insect Pathogenic Bacterium Xenorhabdus nematophila Strain C2-3, Isolated from Nematode Steinernema carpocapsae in the Republic of Korea. PMID:25676754
Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Infantis Strains from Healthy Broiler Chicks in Hungary and in the United Kingdom. PMID:25676749
Core genome and plasmidome of the quorum-quenching bacterium Rhodococcus erythropolis. PMID:25676013
Genomes of planktonic Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics. PMID:25670777
Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. PMID:25667270
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. PMID:25666585
Comparative analysis of super-shedder strains of Escherichia coli O157:H7 reveals distinctive genomic features and a strongly aggregative adherent phenotype on bovine rectoanal junction squamous epithelial cells. PMID:25664460
Draft Genome Sequence of Pseudomonas simiae Strain 2-36, an In Vitro Antagonist of Rhizoctonia solani and Gaeumannomyces graminis. PMID:25657286
Genome Sequence of Sphingobium yanoikuyae B1, a Polycyclic Aromatic Hydrocarbon-Degrading Strain. PMID:25657282
Draft Genome of Escherichia coli O146 Isolate from Maulana Azad Medical College, New Delhi, India. PMID:25657280
Draft Genome Sequence of High-Temperature-Adapted Protochlamydia sp. HS-T3, an Amoebal Endosymbiotic Bacterium Found in Acanthamoeba Isolated from a Hot Spring in Japan. PMID:25657277
Whole-Genome Sequence of Listeria monocytogenes Strains from Clinical and Environmental Samples from Varanasi, India. PMID:25657276
Genome Sequencing of 10 Helicobacter pylori Pediatric Strains from Patients with Nonulcer Dyspepsia and Peptic Ulcer Disease. PMID:25657274
Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume. PMID:25657268
Draft Genome Sequence of Listeria monocytogenes LM201, Isolated from Foodstuff. PMID:25657267
Draft Genome Sequences of the Enteroinvasive Escherichia coli Strains M4163 and 4608-58. PMID:25657266
Genome Sequences of Two Pandoraea pnomenusa Isolates Recovered 11 Months Apart from a Cystic Fibrosis Patient. PMID:25657265
Emergence of an outbreak-associated Clostridium difficile variant with increased virulence. PMID:25653402
Genome analysis of Flaviramulus ichthyoenteri Th78(T) in the family Flavobacteriaceae: insights into its quorum quenching property and potential roles in fish intestine. PMID:25652846
Whole genome sequence and comparative genomic analysis of multidrug-resistant Staphylococcus capitis subsp. urealyticus strain LNZR-1. PMID:25649186
Amoebal endosymbiont Parachlamydia acanthamoebae Bn9 can grow in immortal human epithelial HEp-2 cells at low temperature; an in vitro model system to study chlamydial evolution. PMID:25643359
Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships. PMID:25642229
Natural hot spots for gain of multiple resistances: arsenic and antibiotic resistances in heterotrophic, aerobic bacteria from marine hydrothermal vent fields. PMID:25636836
Complete Genome Sequence of Mycobacterium sp. Strain VKM Ac-1817D, Capable of Producing 9α-Hydroxy-androst-4-ene-3,17-dione from Phytosterol. PMID:25635031
Draft Genome Sequences of Pseudomonas fluorescens Strains PA4C2 and PA3G8 and Pseudomonas putida PA14H7, Three Biocontrol Bacteria against Dickeya Phytopathogens. PMID:25635023
Draft Genome Sequences of the Three Pectobacterium-Antagonistic Bacteria Pseudomonas brassicacearum PP1-210F and PA1G7 and Bacillus simplex BA2H3. PMID:25635020
Complete Genome Sequence of Yersinia ruckeri Strain CSF007-82, Etiologic Agent of Red Mouth Disease in Salmonid Fish. PMID:25635018
Draft Genome Sequence of Paenibacillus Strain P1XP2, a Polysaccharide-Degrading, Thermophilic, Facultative Anaerobic Bacterium Isolated from a Commercial Bioreactor Degrading Food Waste. PMID:25635015
Draft genome sequence of a rhodococcus strain isolated from tannery wastewater treatment sludge. PMID:25635009
Understanding the Quorum-Sensing Bacterium Pantoea stewartii Strain M009 with Whole-Genome Sequencing Analysis. PMID:25635007
Identification of QTLs controlling resistance to Pseudomonas syringae pv. tomato race 1 strains from the wild tomato, Solanum habrochaites LA1777. PMID:25634105
Evidence for Elizabethkingia anophelis transmission from mother to infant, Hong Kong. PMID:25625669
A Coxiella-like endosymbiont is a potential vitamin source for the Lone Star tick. PMID:25618142
Using comparative genomics to drive new discoveries in microbiology. PMID:25617609
Isolation and characterization of a "phiKMV-like" bacteriophage and its therapeutic effect on mink hemorrhagic pneumonia. PMID:25615639
Uncovering effects of antibiotics on the host and microbiota using transkingdom gene networks. PMID:25614621
Draft Genome Sequence of Spirochaeta sp. Strain JC202, an Endosymbiont of the Termite (Isoptera) Gut. PMID:25614577
Complete Genome Sequence of Sphingobacterium sp. Strain ML3W, Isolated from Wings of Myotis lucifugus Infected with White Nose Syndrome. PMID:25614576
Draft Genome Sequence of Rhodovulum sp. Strain NI22, a Naphthalene-Degrading Marine Bacterium. PMID:25614575
Draft genome sequence of calothrix strain 336/3, a novel h2-producing cyanobacterium isolated from a finnish lake. PMID:25614574
Bifidobacterium pseudolongum Strain PV8-2, Isolated from a Stool Sample of an Anemic Kenyan Infant. PMID:25614573
Complete and Assembled Genome Sequence of Bifidobacterium kashiwanohense PV20-2, Isolated from the Feces of an Anemic Kenyan Infant. PMID:25614572
Draft Genome Sequence of Bacillus selenatarsenatis SF-1T, a Promising Agent for Bioremediation of Environments Contaminated with Selenium and Arsenic. PMID:25614571
Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum Proteobacteria). PMID:25614570
Draft Genome Sequence of Enterobacter sp. Strain UCD-UG_FMILLET (Phylum Proteobacteria). PMID:25614569
Full-Length Genome Sequence of Type M/emm83 Group A Streptococcus pyogenes Strain STAB1101, Isolated from Clustered Cases in Brittany. PMID:25614568
Draft Genome Sequence of Alkaliphilic Exiguobacterium sp. Strain HUD, Isolated from a Polymicrobial Consortia. PMID:25614564
Dissemination of blaOXA-23 in Acinetobacter spp. in China: main roles of conjugative plasmid pAZJ221 and transposon Tn2009. PMID:25605357
Draft Genome Sequence of Robinsoniella peoriensis Strain WTD, Isolated from the Fecal Material of a Wood Turtle. PMID:25593266
Draft Genome Sequence of Vibrio owensii GRA50-12, Isolated from Green Algae in the Intertidal Zone of Eastern Taiwan. PMID:25593265
Draft Genome Sequence of the Probiotic Strain Lactobacillus acidophilus ATCC 4356. PMID:25593259
Draft Genome Sequence of Halomonas hydrothermalis MTCC 5445, Isolated from the West Coast of India. PMID:25593258
Draft Genome Sequence of Thermus sp. Isolate 2.9, Obtained from a Hot Water Spring Located in Salta, Argentina. PMID:25593256
Complete Genome Sequence of Pseudoalteromonas sp. Strain OCN003, Isolated from Kāne'ohe Bay, O'ahu, Hawaii. PMID:25593253
Draft Genome Sequence of the Cyanobacterium Aphanizomenon flos-aquae Strain 2012/KM1/D3, Isolated from the Curonian Lagoon (Baltic Sea). PMID:25593252
Genome Sequence of the Heteropolysaccharide-Producing Strain Lactobacillus mucosae DPC 6426. PMID:25593248
Draft Genome Sequence of Sulfurospirillum sp. Strain MES, Reconstructed from the Metagenome of a Microbial Electrosynthesis System. PMID:25593246
Draft Genome Sequences of Four Closely Linked Vibrio vulnificus Isolates from the Biotype 1 Environmental Genotype. PMID:25593245
YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia. PMID:25591325
Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum. PMID:25589577
Transcriptome of the quorum-sensing signal-degrading Rhodococcus erythropolis responds differentially to virulent and avirulent Pectobacterium atrosepticum. PMID:25585922
Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species. PMID:25584532
Non-contiguous finished genome sequence and description of the gliding bacterium Flavobacterium seoulense sp. nov. PMID:25584140
Whole-genome sequence of Chryseobacterium oranimense, a colistin-resistant bacterium isolated from a cystic fibrosis patient in France. PMID:25583710
Draft Genome Sequence of Actinoplanes utahensis NRRL 12052, a Microorganism Involved in Industrial Production of Pharmaceutical Intermediates. PMID:25573944
Finished Genome Sequence of Collimonas arenae Cal35. PMID:25573943
Genome Sequence of Thermoactinomyces daqus H-18, a Novel Thermophilic Species Isolated from High-Temperature Daqu. PMID:25573938
Draft Genome Sequence of Legionella pneumophila D-5864, a Serogroup 6 Strain. PMID:25573935
Draft Genome Sequence of Sphingomonas sp. Strain Ant20, Isolated from Oil-Contaminated Soil on Ross Island, Antarctica. PMID:25573925
Genomic analysis of three African strains of Bacillus anthracis demonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium. PMID:25566394
Characterization of the effect of the histidine kinase CovS on response regulator phosphorylation in group A Streptococcus. PMID:25561708
A new antibiotic kills pathogens without detectable resistance. PMID:25561178
Draft Genome Sequence of Oenococcus oeni Strain X2L (CRL1947), Isolated from Red Wine of Northwest Argentina. PMID:25555740
Insights into the Quorum-Sensing Activity in Aeromonas hydrophila Strain M013 as Revealed by Whole-Genome Sequencing. PMID:25555739
Whole-Genome Sequence of Quorum-Sensing Vibrio tubiashii Strain T33. PMID:25555738
Draft Genome Sequence of the Cellulolytic Bacterium Clavibacter sp. CF11, a Strain Producing Cold-Active Cellulase. PMID:25555737
Whole-Genome Sequence of "Candidatus Liberibacter solanacearum" Strain R1 from California. PMID:25540355
Genome Sequences of Three Highly Copper-Resistant Salmonella enterica subsp. I Serovar Typhimurium Strains Isolated from Pigs in Denmark. PMID:25540347
Whole-Genome Sequence of Borrelia garinii Strain 935T Isolated from Ixodes persulcatus in South Korea. PMID:25540341
Whole-Genome Sequencing Identifies an Atypical Listeria monocytogenes Strain Isolated from Pet Foods. PMID:25540336
Draft Genome Sequence of the Novel Black-Pigmented Planococcus sp. Strain CAU13. PMID:25540335
Interrogation of the Burkholderia pseudomallei genome to address differential virulence among isolates. PMID:25536074
Complete Genome Sequence of Vibrio coralliilyticus Strain OCN014, Isolated from a Diseased Coral at Palmyra Atoll. PMID:25523774
Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients. PMID:25523766
Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages. PMID:25522320
Complete genome sequence and comparative genomic analysis of Mycobacterium massiliense JCM 15300 in the Mycobacterium abscessus group reveal a conserved genomic island MmGI-1 related to putative lipid metabolism. PMID:25503461
Helicobacter pylori genetic diversity and gastro-duodenal diseases in Malaysia. PMID:25503415
Draft Genome Sequence of Erwinia oleae, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. savastanoi. PMID:25502684
Draft Genome Sequence of Methylobacterium sp. Strain L2-4, a Leaf-Associated Endophytic N-Fixing Bacterium Isolated from Jatropha curcas L. PMID:25502683
Draft Genome Sequence of Gephyronic Acid Producer Cystobacter violaceus Strain Cb vi76. PMID:25502681
Draft Genome Sequence of the Mannitol-Producing Strain Lactobacillus mucosae CRL573. PMID:25502678
Draft Genome Sequence and Annotation of the Entomopathogenic Bacterium Photorhabdus luminescens LN2, Which Shows Nematicidal Activity against Heterorhabditis bacteriophora H06 Nematodes. PMID:25502667
Draft Genome Sequence of Pseudoalteromonas sp. Strain PLSV, an Ulvan-Degrading Bacterium. PMID:25502665
Mutations in global regulators lead to metabolic selection during adaptation to complex environments. PMID:25501822
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. PMID:25496341
Investigation of a new acetogen isolated from an enrichment of the tammar wallaby forestomach. PMID:25495654
Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes. PMID:25489752
Genomic insights into intrinsic and acquired drug resistance mechanisms in Achromobacter xylosoxidans. PMID:25487802
Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis. PMID:25480015
Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus. PMID:25479613
Integrative workflows for metagenomic analysis. PMID:25478562
Genomic diversification in strains of Rickettsia felis Isolated from different arthropods. PMID:25477419
Draft Genome Sequence of the Versatile Alkane-Degrading Bacterium Aquabacterium sp. Strain NJ1. PMID:25477416
Draft Genome Sequence of the Anti-Algal Marine Actinomycete Streptomyces sp. JS01. PMID:25477414
Draft Genome Sequence of Bacillus subtilis GXA-28, a Thermophilic Strain with High Productivity of Poly-γ-Glutamic Acid. PMID:25477413
Draft Genome Sequence of Sphingopyxis sp. Strain MWB1, a Crude-Oil-Degrading Marine Bacterium. PMID:25477411
Draft Genome Sequence of the Nicotinate-Metabolizing Soil Bacterium Bacillus niacini DSM 2923. PMID:25477409
Draft Genome Sequence of an Aniline-Degrading Bacterium, Burkholderia sp. K24. PMID:25477408
Draft Genome Sequence of Marine Flavobacterium Jejuia pallidilutea Strain 11shimoA1 and Pigmentation Mutants. PMID:25477402
High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology. PMID:25437800
Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors. PMID:25437615
Genomics-Based Exploration of Virulence Determinants and Host-Specific Adaptations of Pseudomonas syringae Strains Isolated from Grasses. PMID:25437611
Global genome comparative analysis reveals insights of resistome and life-style adaptation of Pseudomonas putida strain T2-2 in oral cavity. PMID:25436236
Impact of analytic provenance in genome analysis. PMID:25435180
Draft Genome Sequence of Chryseobacterium sp. Strain P1-3, a Keratinolytic Bacterium Isolated from Poultry Waste. PMID:25428979
Kingella kingae KK247, an Atypical Pulsed-Field Gel Electrophoresis Clone A Strain. PMID:25428974
Draft Genome Sequence of Fish Pathogenic Vibrio vulnificus Biotype 2. PMID:25428972
Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage. PMID:25424998
Comprehensive phylogenetic analysis of bacterial reverse transcriptases. PMID:25423096
Comparative analysis of surface-exposed virulence factors of Acinetobacter baumannii. PMID:25422040
Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways. PMID:25418849
Comparative genomic analysis of Mycobacterium iranicum UM_TJL against representative mycobacterial species suggests its environmental origin. PMID:25417557
Draft Genome Sequence of Escherichia coli Strain VKPM B-10182, Producing the Enzyme for Synthesis of Cephalosporin Acids. PMID:25414512
First draft genome sequence of a member of the genus mangrovibacter, isolated from an aquaculture farm in India. PMID:25414507
Draft Genome Sequence of Cryobacterium roopkundensis Strain RuGl7, Isolated from a Soil Sample in the Vicinity of Roopkund Lake, Himalayas, India. PMID:25414505
Draft genome sequences of two novel Aeromonas species recovered in association with cyanobacterial blooms. PMID:25414500
Complete Genome Sequence of Streptococcus pyogenes M/emm44 Strain STAB901, Isolated in a Clonal Outbreak in French Brittany. PMID:25414498
Draft Genome Sequence of Psychrotrophic Acinetobacter sp. Strain MN12 (MTCC 10786), Which Produces a Low-Temperature-Active and Alkaline-Stable Peptidase. PMID:25414495
Draft Genome Sequence of the Halophilic and Highly Halotolerant Gammaproteobacteria Strain MFB021. PMID:25414494
Draft Genome Sequence of Nitrincola sp. Strain A-D6, an Arsenic-Resistant Gammaproteobacterium Isolated from a Salt Flat. PMID:25414492
Comparative genomics of closely related Salmonella enterica serovar Typhi strains reveals genome dynamics and the acquisition of novel pathogenic elements. PMID:25412680
In vivo function and comparative genomic analyses of the Drosophila gut microbiota identify candidate symbiosis factors. PMID:25408687
Complete nucleotide sequence of cfr-carrying IncX4 plasmid pSD11 from Escherichia coli. PMID:25403661
Ecological succession and viability of human-associated microbiota on restroom surfaces. PMID:25398865
Genome sequence and phenotypic characterization of Caulobacter segnis. PMID:25398322
Genome sequencing and annotation of Afipia septicemium strain OHSU_II. PMID:25396117
Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4. PMID:25395640
Draft Genome Sequences of Marine Flavobacterium Nonlabens Strains NR17, NR24, NR27, NR32, NR33, and Ara13. PMID:25395639
Complete Nucleotide Sequence of a Citrobacter freundii Plasmid Carrying KPC-2 in a Unique Genetic Environment. PMID:25395635
Draft Genome Sequence of Lactobacillus plantarum CMPG5300, a Human Vaginal Isolate. PMID:25395634
Complete Genome Sequences of Beijing and Manila Family Strains of Mycobacterium tuberculosis. PMID:25395630
Draft Genome Sequence of Bacillus megaterium Type Strain ATCC 14581. PMID:25395629
Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response. PMID:25393412
Characterization and comparative analysis of antibiotic resistance plasmids isolated from a wastewater treatment plant. PMID:25389419
Unencapsulated Streptococcus pneumoniae from conjunctivitis encode variant traits and belong to a distinct phylogenetic cluster. PMID:25388376
Draft Genome Sequence of the Iron-Oxidizing Acidophile Leptospirillum ferriphilum Type Strain DSM 14647. PMID:25377718
Genome Sequence of Borrelia crocidurae Strain 03-02, a Clinical Isolate from Senegal. PMID:25377717
Complete Genome Sequence of Cellulophaga lytica HI1 Using PacBio Single-Molecule Real-Time Sequencing. PMID:25377716
Draft Genome Sequence of Bacillus subtilis Strain NKYL29, an Antimicrobial-Peptide-Producing Strain from Soil. PMID:25377715
Draft Genome Sequence of Pseudomonas aeruginosa ATCC 33988, a Bacterium Highly Adapted to Fuel-Polluted Environments. PMID:25377703
Draft Genome Sequence of Non-O1 and Non-O139 Vibrio cholerae Strain VCC19. PMID:25377699
From microbial gene essentiality to novel antimicrobial drug targets. PMID:25373505
Draft genome sequence analysis of a Pseudomonas putida W15Oct28 strain with antagonistic activity to Gram-positive and Pseudomonas sp. pathogens. PMID:25369289
Genome-scale reconstruction of metabolic networks of Lactobacillus casei ATCC 334 and 12A. PMID:25365062
Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PMID:25360710
Draft Genome Sequences of Amoeba-Resistant Aeromonas spp. Isolated from Aquatic Environments. PMID:25359918
Draft Genome Sequence of Rhizobium rhizogenes Strain ATCC 15834. PMID:25359916
Draft Genome Sequence of Colistin-Only-Susceptible Pseudomonas aeruginosa Strain ST235, a Hypervirulent High-Risk Clone in Spain. PMID:25359914
Draft Genome Sequences of Two Vibrionaceae Species, Vibrio ponticus C121 and Photobacterium aphoticum C119, Isolated as Coral Reef Microbiota. PMID:25359913
Genome Sequence of the Plant Endophyte Bacillus pumilus INR7, Triggering Induced Systemic Resistance in Field Crops. PMID:25359912
Genome Sequence of Bacillus amyloliquefaciens GB03, an Active Ingredient of the First Commercial Biological Control Product. PMID:25359911
Divergence of protein-coding capacity and regulation in the Bacillus cereus sensu lato group. PMID:25350501
Physiology and evolution of nitrate acquisition in Prochlorococcus. PMID:25350156
Differences in carbon source utilisation distinguish Campylobacter jejuni from Campylobacter coli. PMID:25348335
Complete genome sequence of bacteriophage vB_YenP_AP5 which infects Yersinia enterocolitica of serotype O:3. PMID:25347934
Complete genome determination and analysis of Acholeplasma oculi strain 19L, highlighting the loss of basic genetic features in the Acholeplasmataceae. PMID:25344468
Metagenomic assessment of the eastern oyster-associated microbiota. PMID:25342691
Draft Genome Sequences of Two Ulvan-Degrading Isolates, Strains LTR and LOR, That Belong to the Alteromonas Genus. PMID:25342689
Genome Sequences of Brucella abortus and Brucella suis Strains Isolated from Bovine in Zimbabwe. PMID:25342680
First Genome Sequence of Potential Mycotoxin-Degrading Bacterium Devosia nanyangense DDB001. PMID:25342671
The genomic landscape of the verrucomicrobial methanotroph Methylacidiphilum fumariolicum SolV. PMID:25331649
Phylogenomic and MALDI-TOF MS analysis of Streptococcus sinensis HKU4T reveals a distinct phylogenetic clade in the genus Streptococcus. PMID:25331233
Identification and monitoring of nitrification and denitrification genes in Klebsiella pneumoniae EGD-HP19-C for its ability to perform heterotrophic nitrification and aerobic denitrification. PMID:25326064
Vertical transmission of highly similar bla CTX-M-1-harboring IncI1 plasmids in Escherichia coli with different MLST types in the poultry production pyramid. PMID:25324838
Draft Genome Sequence of Raoultella planticola, Isolated from River Water. PMID:25323725
Draft Genome Sequence of Buttiauxella agrestis, Isolated from Surface Water. PMID:25323724
Draft Genome Sequence of the Ionic Liquid-Tolerant Bacterium Bacillus amyloliquefaciens CMW1. PMID:25323721
Complete Genome Sequence of a Dimethyl Sulfide-Utilizing Bacterium, Acinetobacter guillouiae Strain 20B (NBRC 110550). PMID:25323718
Draft Genome Sequences of Yersinia pestis Strains from the 1994 Plague Epidemic of Surat and 2002 Shimla Outbreak in India. PMID:25320451
Draft Genome Sequence of a Multidrug-Resistant bla NDM-1-Producing Acinetobacter soli Isolate in China. PMID:25320449
Draft Genome Sequence of an Extreme Haloarchaeon 3A1-DGR Isolated from a Saltern Crystallizer of the Little Rann of Kutch, India. PMID:25320448
Draft Genome Sequences of Vancomycin-Susceptible Staphylococcus aureus Related to Heterogeneous Vancomycin-Intermediate S. aureus. PMID:25301662
Draft Genome Sequences of Two Antimicrobial-Producing Burkholderia sp. Strains, MSh1 and MSh2, Isolated from Malaysian Tropical Peat Swamp Forest Soil. PMID:25301661
Draft Genome Sequence of Cellulosimicrobium sp. Strain MM, Isolated from Arsenic-Rich Microbial Mats of a Himalayan Hot Spring. PMID:25301656
Draft Genome Sequence of Thermoanaerobacterium saccharolyticum Strain NTOU1, a Thermophilic Bacterium Isolated from Marine Shallow Hydrothermal Vents. PMID:25301655
Draft Genome Sequence of Strain BF-4, a Lysinibacillus-Like Bacillus Isolated during an Anthrax Outbreak in Bavaria. PMID:25301643
Genomic overview of the phytopathogen Pectobacterium wasabiae strain RNS 08.42.1A suggests horizontal acquisition of quorum-sensing genes. PMID:25297844
Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam. PMID:25293379
Genome Sequence of Porphyromonas gingivalis Strain HG66 (DSM 28984). PMID:25291768
Genome sequencing and genomic characterization of a tigecycline-resistant Klebsiella pneumoniae strain isolated from the bile samples of a cholangiocarcinoma patient. PMID:25279004
Draft Genome Sequence of the Oyster Larval Probiotic Bacterium Vibrio sp. Strain OY15. PMID:25278542
Draft Genome Sequence of "Candidatus Liberibacter asiaticus" from California. PMID:25278540
Draft Genome Sequences of Devosia sp. Strain 17-2-E-8 and Devosia riboflavina Strain IFO13584. PMID:25278537
Draft Genome Sequence of Bacillus subtilis Strain D7XPN1, Isolated from Commercial Bioreactor-Degrading Food Waste. PMID:25278534
Draft Genome Sequence of a Deep-Sea Bacterium, Bacillus niacini Strain JAM F8, Involved in the Degradation of Glycosaminoglycans. PMID:25278530
Draft Genome Sequence of Pseudomonas savastanoi pv. savastanoi Strain DAPP-PG 722, Isolated in Italy from an Olive Plant Affected by Knot Disease. PMID:25278521
Draft Genome Sequence of a Psychrophilic Bacterium, Sphingomonas antarcticum, Isolated from the Soils of Schirmacher Oasis, Antarctica. PMID:25278517
The characteristics of ubiquitous and unique Leptospira strains from the collection of Russian centre for leptospirosis. PMID:25276806
Metagenome-wide association of microbial determinants of host phenotype in Drosophila melanogaster. PMID:25271286
Worldwide occurrence of integrative conjugative element encoding multidrug resistance determinants in epidemic Vibrio cholerae O1. PMID:25265418
Anaerobic activation of p-cymene in denitrifying betaproteobacteria: methyl group hydroxylation versus addition to fumarate. PMID:25261521
Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data. PMID:25258679
VibrioBase: a model for next-generation genome and annotation database development. PMID:25243218
Draft Genome Sequence of Serratia grimesii Strain A2. PMID:25237029
Draft Genome Sequence of the Shellfish Bacterial Pathogen Vibrio sp. Strain B183. PMID:25237023
Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain. PMID:25237016
Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli. PMID:25222563
Genome sequence of Candidatus Riesia pediculischaeffi, endosymbiont of chimpanzee lice, and genomic comparison of recently acquired endosymbionts from human and chimpanzee lice. PMID:25213693
Genome information of Methylobacterium oryzae, a plant-probiotic methylotroph in the phyllosphere. PMID:25211235
Non-contiguous finished genome sequence of Prevotella timonensis type strain 4401737(T.). PMID:25197502
Non-contiguous finished genome sequence and description of Kurthia senegalensis sp. nov. PMID:25197500
Genome sequence and description of Bacteroides timonensis sp. nov. PMID:25197491
Non-contiguous finished genome sequence and description of Collinsella massiliensis sp. nov. PMID:25197489
Non contiguous-finished genome sequence and description of Clostridium jeddahense sp. nov. PMID:25197479
Non-contiguous finished genome sequence of Corynebacterium timonense type strain 5401744(T.). PMID:25197476
The Genome Sequence of a Type ST239 Methicillin-Resistant Staphylococcus aureus Isolate from a Malaysian Hospital. PMID:25197474
Draft genome sequence of Dyadobacter tibetensis type strain (Y620-1) isolated from glacial ice. PMID:25197470
Non-contiguous finished genome sequence of Anoxybacillus flavithermus subsp. yunnanensis type strain (E13(T)), a strictly thermophilic and organic solvent-tolerant bacterium. PMID:25197458
Genomic analysis of Agrobacterium radiobacter DSM 30147(T) and emended description of A. radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980) emend. Sawada et al. 1993. PMID:25197445
Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8(T.). PMID:25197435
A draft genome of Escherichia coli sequence type 127 strain 2009-46. PMID:25197321
Genome analysis of Campylobacter jejuni strains isolated from a waterborne outbreak. PMID:25196593
Enterobacter asburiae strain L1: complete genome and whole genome optical mapping analysis of a quorum sensing bacterium. PMID:25196111
Genomic evidence for the emergence and evolution of pathogenicity and niche preferences in the genus Campylobacter. PMID:25193310
Evolution and comparative genomics of Campylobacter jejuni ST-677 clonal complex. PMID:25193305
Complete Genome Sequence of Actinobaculum schaalii Strain CCUG 27420. PMID:25189588
Draft Genome Sequence of Pseudomonas sp. Strain JMM, a Sediment-Hosted Environmental Isolate. PMID:25189587
Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi). PMID:25189583
Draft Genome Sequences of Four Strains of Vibrio parahaemolyticus, Three of Which Cause Early Mortality Syndrome/Acute Hepatopancreatic Necrosis Disease in Shrimp in China and Thailand. PMID:25189578
Genome Sequencing of a Mung Bean Plant Growth Promoting Strain of P. aeruginosa with Biocontrol Ability. PMID:25184130
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. PMID:25177534
Expanding the verrucomicrobial methanotrophic world: description of three novel species of Methylacidimicrobium gen. nov. PMID:25172849
Comparative genome analysis and identification of competitive and cooperative interactions in a polymicrobial disease. PMID:25171331
Longitudinal analysis of microbial interaction between humans and the indoor environment. PMID:25170151
Draft Genome Sequence of the Moderately Thermophilic Bacterium Schleiferia thermophila Strain Yellowstone (Bacteroidetes). PMID:25169864
Genome Sequence of Paenibacillus polymyxa Strain CICC 10580, Isolated from the Fruit of Noni (Morinda citrifolia L.) Grown in the Paracel Islands. PMID:25169860
Closed Genome Sequence of Noninvasive Streptococcus pyogenes M/emm3 Strain STAB902. PMID:25169855
Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt. PMID:25168460
Secretome of obligate intracellular Rickettsia. PMID:25168200
The Ellis Island Effect: A novel mobile element in a multi-drug resistant Bacteroides fragilis clinical isolate includes a mosaic of resistance genes from Gram-positive bacteria. PMID:25165618
Klebsiella: a long way to go towards understanding this enigmatic jet-setter. PMID:25165563
Complete nucleotide sequence of pRS218, a large virulence plasmid, that augments pathogenic potential of meningitis-associated Escherichia coli strain RS218. PMID:25164788
Whole-genome sequence analysis of the naturally competent Acinetobacter baumannii clinical isolate A118. PMID:25164683
Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut. PMID:25162593
High resolution assembly and characterization of genomes of Canadian isolates of Salmonella Enteritidis. PMID:25156331
FusoBase: an online Fusobacterium comparative genomic analysis platform. PMID:25149689
Combined use of bacteriophage K and a novel bacteriophage to reduce Staphylococcus aureus biofilm formation. PMID:25149517
Genome Sequence of Mycobacterium tuberculosis C2, a Cerebrospinal Fluid Clinical Isolate from Central India. PMID:25146143
Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1. PMID:25146141
Genome Sequence of Rhodococcus opacus Strain R7, a Biodegrader of Mono- and Polycyclic Aromatic Hydrocarbons. PMID:25146139
Draft Genome Sequence of Falsirhodobacter sp. Strain alg1, an Alginate-Degrading Bacterium Isolated from Fermented Brown Algae. PMID:25146138
Draft Genome Sequence of Brucella abortus S99: Designated Antigenic Smooth Reference Strain Used in Diagnostic Tests in India. PMID:25146137
Closely related NDM-1-encoding plasmids from Escherichia coli and Klebsiella pneumoniae in Taiwan. PMID:25144712
Virulence and draft genome sequence overview of multiple strains of the swine pathogen Haemophilus parasuis. PMID:25137096
Impact of next generation sequencing techniques in food microbiology. PMID:25132799
Draft Genome Sequence of Rifamycin Derivatives Producing Amycolatopsis mediterranei Strain DSM 46096/S955. PMID:25125653
A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933. PMID:25125650
Draft Genome Sequence of Haloferax sp. Strain ATB1, Isolated from a Semi-Arid Region in the Brazilian Caatinga. PMID:25125649
Draft Genome Sequence of Nonlabens ulvanivorans, an Ulvan-Degrading Bacterium. PMID:25125644
Draft Genome Sequence of Microbacterium sp. Strain CH12i, Isolated from Shallow Groundwater in Cape Hallett, Antarctica. PMID:25125643
Complete Nucleotide Sequence of pVv01, a P1-Like Plasmid Prophage of Vibrio vulnificus. PMID:25125637
Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine. PMID:25124552
A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data. PMID:25122209
Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae. PMID:25120558
Draft genome sequence of Rhodomicrobium udaipurense JA643T with special reference to hopanoid biosynthesis. PMID:25117430
Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates. PMID:25116839
Small but powerful, the primary endosymbiont of moss bugs, Candidatus Evansia muelleri, holds a reduced genome with large biosynthetic capabilities. PMID:25115011
Draft Genome Sequence of Hexachlorohexane (HCH)-Degrading Sphingobium lucknowense Strain F2T, Isolated from an HCH Dumpsite. PMID:25103767
Draft Genome Sequence of a Hypersensitive Reaction-Inducing Pantoea agglomerans Strain Isolated from Olive Knots Caused by Pseudomonas savastanoi pv. savastanoi. PMID:25103763
Complete Genome Sequence of Bacillus anthracis HYU01, Isolated from Soil Samples in the Korean Peninsula. PMID:25103761
Whole-Genome Shotgun Sequence of Arthrospira platensis Strain Paraca, a Cultivated and Edible Cyanobacterium. PMID:25103760
Draft Genome Sequences of the Onion Center Rot Pathogen Pantoea ananatis PA4 and Maize Brown Stalk Rot Pathogen P. ananatis BD442. PMID:25103759
Whole-Genome Sequence of Streptococcus macedonicus Strain 33MO, Isolated from the Curd of Morlacco Cheese in the Veneto Region (Italy). PMID:25103758
Complete Genome Sequence of Bacillus subtilis BAB-1, a Biocontrol Agent for Suppression of Tomato Gray Mold. PMID:25103757
Draft Genome Sequence of Hymenobacter sp. Strain IS2118, Isolated from a Freshwater Lake in Schirmacher Oasis, Antarctica, Reveals Diverse Genes for Adaptation to Cold Ecosystems. PMID:25103756
Do rumen Bacteroidetes utilize an alternative mechanism for cellulose degradation? PMID:25096880
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions. PMID:25096633
Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline. PMID:25088811
Genomic insights into the evolutionary origin of Xanthomonas axonopodis pv. citri and its ecological relatives. PMID:25085494
Finished Genome Sequence of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC 6714. PMID:25081267
Draft Genome Sequence of Pasteurella multocida subsp. multocida B:2 Strain VTCCBAA264 Isolated from Bubalus bubalis in North India. PMID:25081265
Draft Genome Sequence of Amycolatopsis mediterranei DSM 40773, a Tangible Antibiotic Producer. PMID:25081263
Draft Genome Sequence of a Symbiotic Bacterium, Rhizobium vignae CCBAU 05176T. PMID:25081255
Three classes of plasmid (47-63 kb) carry the type B neurotoxin gene cluster of group II Clostridium botulinum. PMID:25079343
Gene clusters of Hafnia alvei strain FB1 important in survival and pathogenesis: a draft genome perspective. PMID:25075225
Source tracking of an anthrax outbreak in northeastern China using complete genome analysis and MLVA genotyping. PMID:25073769
Extensively drug-resistant pseudomonas aeruginosa isolates containing blaVIM-2 and elements of Salmonella genomic island 2: a new genetic resistance determinant in Northeast Ohio. PMID:25070102
Draft Genome Sequence of Lutibaculum baratangense Strain AMV1T, Isolated from a Mud Volcano in Andamans, India. PMID:25059877
Whole-Genome Sequence of CMY-2 β-Lactamase-Producing Salmonella enterica Serovar Typhimurium Strain L-3553. PMID:25059867
Complete Genome Sequence of the Model Rhizosphere Strain Azospirillum brasilense Az39, Successfully Applied in Agriculture. PMID:25059863
Complete Genome Sequence of Staphylococcus aureus XN108, an ST239-MRSA-SCCmec III Strain with Intermediate Vancomycin Resistance Isolated in Mainland China. PMID:25059856
6-hydroxy-3-succinoylpyridine hydroxylase catalyzes a central step of nicotine degradation in Agrobacterium tumefaciens S33. PMID:25054198
Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand. PMID:25037613
Draft Genome Sequence of the Endosymbiont "Candidatus Ruthia magnifica" UCD-CM (Phylum Proteobacteria). PMID:25035337
Genome Sequence of "Candidatus Arthromitus" sp. Strain SFB-Mouse-NL, a Commensal Bacterium with a Key Role in Postnatal Maturation of Gut Immune Functions. PMID:25035333
Draft Genome Sequence of Deinococcus sp. Strain RL Isolated from Sediments of a Hot Water Spring. PMID:25035332
Whole-Genome Sequencing of an Isoniazid-Resistant Clinical Isolate of Mycobacterium tuberculosis Strain MtURU-002 from Uruguay. PMID:25035326
Genome Sequence of Bacillus thuringiensis subsp. kurstaki Strain HD-1. PMID:25035322
Curtobacterium sp. Genome Sequencing Underlines Plant Growth Promotion-Related Traits. PMID:25035321
A comparative pan-genome perspective of niche-adaptable cell-surface protein phenotypes in Lactobacillus rhamnosus. PMID:25032833
HelicoBase: a Helicobacter genomic resource and analysis platform. PMID:25030426
Genome sequencing, annotation and comparative genomic analysis of Shigella dysenteriae strain SD1D. PMID:25028600
Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. PMID:25024905
Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss? PMID:25013894
Complete Genome Sequence of Vibrio anguillarum Phage CHOED Successfully Used for Phage Therapy in Aquaculture. PMID:25013148
Draft Genomes of Heterogeneous Vancomycin-Intermediate Staphylococcus aureus Strain MM66 and MM66 Derivatives with Altered Vancomycin Resistance Levels. PMID:25013145
Complete Genome Sequences of Two Central European Brucella suis bv. 2 Haplotype 2c Strains Isolated from Wild Boars. PMID:25013144
Draft Genome Sequence of Environmental Vibrio cholerae 2012EL-1759 with Similarities to the V. cholerae O1 Classical Biotype. PMID:25013135
Complete Genome Sequences of Four Novel Lactococcus lactis Phages Distantly Related to the Rare 1706 Phage Species. PMID:25013130
Influenza promotes pneumococcal growth during coinfection by providing host sialylated substrates as a nutrient source. PMID:25011108
Progressive genomic convergence of two Helicobacter pylori strains during mixed infection of a patient with chronic gastritis. PMID:25007814
Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe. PMID:25002542
Nitrogen-fixing rhizobial strains isolated from common bean seeds: phylogeny, physiology, and genome analysis. PMID:25002426
Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea. PMID:24999826
Characterization, sequencing and comparative genomic analysis of vB_AbaM-IME-AB2, a novel lytic bacteriophage that infects multidrug-resistant Acinetobacter baumannii clinical isolates. PMID:24996449
Draft Genome Sequence of Cupriavidus sp. Strain SK-3, a 4-Chlorobiphenyl- and 4-Clorobenzoic Acid-Degrading Bacterium. PMID:24994805
Draft Genome Sequence of the Rifamycin Producer Amycolatopsis rifamycinica DSM 46095. PMID:24994803
Genome Sequence of Streptomyces wadayamensis Strain A23, an Endophytic Actinobacterium from Citrus reticulata. PMID:24994795
Complete Genome Sequences of Three Iberian Brucella suis Biovar 2 Strains Isolated from Wild Boars. PMID:24994794
Draft Genome Sequence of Escherichia coli MS499, Isolated from the Infected Uterus of a Postpartum Cow with Metritis. PMID:24994791
Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov. PMID:24976893
Non-contiguous finished genome sequence of Phocaeicola abscessus type strain 7401987(T.). PMID:24976891
A Pseudomonas putida strain genetically engineered for 1,2,3-trichloropropane bioremediation. PMID:24973068
Genome Sequence of Thermophilic Bacillus licheniformis Strain 3F-3, an Efficient Pentose-Utilizing Producer of 2,3-Butanediol. PMID:24970831
Draft Genome Sequence of trh+ Vibrio parahaemolyticus VP-49, Isolated from Seafood Harvested along the Mangalore Coast, India. PMID:24970827
Draft Genome Sequence of Enterotoxigenic Escherichia coli Strain W25K. PMID:24970825
Genome Sequence of Streptomyces olindensis DAUFPE 5622, Producer of the Antitumoral Anthracycline Cosmomycin D. PMID:24970824
Comparative genomics of methicillin-resistant Staphylococcus aureus ST239: distinct geographical variants in Beijing and Hong Kong. PMID:24969089
The first complete genome sequence of the class Fimbriimonadia in the phylum Armatimonadetes. PMID:24967843
Four Escherichia coli O157:H7 phages: a new bacteriophage genus and taxonomic classification of T1-like phages. PMID:24963920
Genome sequence and phenotypic analysis of a first German Francisella sp. isolate (W12-1067) not belonging to the species Francisella tularensis. PMID:24961323
Genome sequences characterizing five mutations in RNA polymerase and major capsid of phages ϕA318 and ϕAs51 of Vibrio alginolyticus with different burst efficiencies. PMID:24952762
The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen. PMID:24952578
Population dynamics of an Acinetobacter baumannii clonal complex during colonization of patients. PMID:24951812
Draft Genome Sequence of Enterococcus faecalis MB5259. PMID:24948775
Draft Genome Sequence of Bacillus amyloliquefaciens B-1895. PMID:24948774
Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod. PMID:24948773
Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples. PMID:24948772
Draft Genome Sequence of Bacillus subtilis strain KATMIRA1933. PMID:24948771
Draft Genome Sequence of a Legionella pneumophila Serogroup 4 Strain Causing Legionellosis. PMID:24948769
Genome Sequence of meso-2,3-Butanediol-Producing Strain Serratia marcescens ATCC 14041. PMID:24948764
Draft Genome Sequence of "Candidatus Cronobacter colletis" NCTC 14934T, a New Species in the Genus Cronobacter. PMID:24948763
Genomic comparative analysis of the environmental Enterococcus mundtii against enterococcal representative species. PMID:24942651
Variable characteristics of bacteriocin-producing Streptococcus salivarius strains isolated from Malaysian subjects. PMID:24941127
Contribution of the highly conserved EaeH surface protein to enterotoxigenic Escherichia coli pathogenesis. PMID:24935979
Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake. PMID:24927949
High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource. PMID:24927599
Genome Sequences of Strain ATCC 29281 and Pin and Northern Red Oak Isolates of Lonsdalea quercina subsp. quercina. PMID:24926062
Draft Genome Sequence of Aeromonas hydrophila Strain Ae34, Isolated from a Septicemic and Moribund Koi Carp (Cyprinus carpio koi), a Freshwater Aquarium Fish. PMID:24926056
Draft Genome Sequences of Two Genetic Variant Strains of Edwardsiella piscicida, JF1305 and RSB1309, Isolated from Olive Flounder (Paralichythys olivaceus) and Red Sea Bream (Pagrus major) Cultured in Japan, Respectively. PMID:24926054
Genome Sequence of SCB34, a Sequence Type 131 Multidrug-Resistant Escherichia coli Isolate Causing Neonatal Early-Onset Sepsis. PMID:24926049
Draft Genome Sequence of Insecticidal Streptomyces sp. Strain PCS3-D2, Isolated from Mangrove Soil in Philippines. PMID:24926046
Comparative genomic analysis of Mycobacterium tuberculosis clinical isolates. PMID:24923884
Emerging strategies and integrated systems microbiology technologies for biodiscovery of marine bioactive compounds. PMID:24918453
Genomic insights into the uncultured genus 'Candidatus Magnetobacterium' in the phylum Nitrospirae. PMID:24914800
Comparative genomics of an IncA/C multidrug resistance plasmid from Escherichia coli and Klebsiella isolates from intensive care unit patients and the utility of whole-genome sequencing in health care settings. PMID:24914121
Genomic heterogeneity and ecological speciation within one subspecies of Bacillus subtilis. PMID:24907327
Resistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strain. PMID:24905728
Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing. PMID:24904564
Draft Genome Sequences of Geobacillus sp. Strains CAMR5420 and CAMR12739. PMID:24903881
Draft Genome Sequence of Geobacillus thermopakistaniensis Strain MAS1. PMID:24903880
Complete Genome Sequence of a Moderately Virulent Aeromonas hydrophila Strain, pc104A, Isolated from Soil of a Catfish Pond in West Alabama. PMID:24903879
Complete Genome Sequence of a Virulent Strain, Streptococcus iniae ISET0901, Isolated from Diseased Tilapia. PMID:24903878
Genome Sequence of a Promising Hydrogen-Producing Facultative Anaerobic Bacterium, Brevundimonas naejangsanensis Strain B1. PMID:24903872
Draft Genome Sequence of the Mycobacterium tuberculosis Clinical Isolate C2, Belonging to the Latin American-Mediterranean Family. PMID:24903871
Draft Genome Sequence of Pseudomonas sp. Strain Ant30-3, a Psychrotolerant Bacterium with Biodegradative Attribute Isolated from Antarctica. PMID:24903870
Genome Sequence of Leuconostoc mesenteroides subsp. cremoris Strain T26, Isolated from Mesophilic Undefined Cheese Starter. PMID:24903867
Genome Sequences of Two Leuconostoc pseudomesenteroides Strains Isolated from Danish Dairy Starter Cultures. PMID:24903866
Draft Genome Sequence of Xanthomonas arboricola pv. pruni Strain Xap33, Causal Agent of Bacterial Spot Disease on Almond. PMID:24903863
Genome Sequences of Two Temperate Phages, ΦCB2047-A and ΦCB2047-C, Infecting Sulfitobacter sp. Strain 2047. PMID:24903862
Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode. PMID:24901418
Exopolysaccharide (EPS) synthesis by Oenococcus oeni: from genes to phenotypes. PMID:24901216
Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States. PMID:24898914
Complete sequencing of IncI1 sequence type 2 plasmid pJIE512b indicates mobilization of blaCMY-2 from an IncA/C plasmid. PMID:24890591
Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. PMID:24888481
Comparative genomic characterization of a Thailand-Myanmar isolate, MS6, of Vibrio cholerae O1 El Tor, which is phylogenetically related to a "US Gulf Coast" clone. PMID:24887199
Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle. PMID:24885539
Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor. PMID:24885329
Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis. PMID:24884615
Whole genome analyses of marine fish pathogenic isolate, Mycobacterium sp. 012931. PMID:24879010
Draft Genome Sequence of Methicillin-Resistant Staphylococcus epidermidis Strain ET-024, Isolated from an Endotracheal Tube Biofilm of a Mechanically Ventilated Patient. PMID:24874691
Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation. PMID:24874689
Complete Genome Sequence of the Attenuated Novobiocin-Resistant Streptococcus iniae Vaccine Strain ISNO. PMID:24874684
Genome Sequence of Bacillus cereus Strain A1, an Efficient Starch-Utilizing Producer of Hydrogen. PMID:24874679
Complete Genome Sequence of Winogradskyella sp. Strain PG-2, a Proteorhodopsin-Containing Marine Flavobacterium. PMID:24874677
Genome Sequence of Sporolactobacillus terrae DSM 11697, the Type Strain of the Species. PMID:24874673
Draft Genome Sequence of blaNDM-1-Positive Escherichia coli O25b-ST131 Clone Isolated from an Environmental Sample. PMID:24874672
Draft Whole-Genome Sequence of a New Variant of Vibrio cholerae O1 El Tor Strain Isolated from a Cholera Patient in Russia. PMID:24874670
Draft Genome Sequence of Pantoea ananatis Strain LMG 2665T, a Bacterial Pathogen of Pineapple Fruitlets. PMID:24855311
Draft Genome Sequence of Actibacterium mucosum KCTC 23349, a Marine Alphaproteobacterium with Complex Ionic Requirements Isolated from Mediterranean Seawater at Malvarrosa Beach, Valencia, Spain. PMID:24855309
Complete Genome Sequences of Two Escherichia coli O145:H28 Outbreak Strains of Food Origin. PMID:24855308
Draft Genome Sequence of Cupriavidus sp. Strain SK-4, a di-ortho-Substituted Biphenyl-Utilizing Bacterium Isolated from Polychlorinated Biphenyl-Contaminated Sludge. PMID:24855306
Draft Genome Sequence of Lactobacillus plantarum wikim18, Isolated from Korean Kimchi. PMID:24855305
Draft Genome Sequence of Streptococcus parauberis Strain SK-417, Isolated from Diseased Sebastes ventricosus in Kagoshima, Japan. PMID:24855302
Complete Genome Sequence of the Highly Virulent Aeromonas hydrophila AL09-71 Isolated from Diseased Channel Catfish in West Alabama. PMID:24855300
Draft Genome Sequence of the Nonstarter Bacteriocin-Producing Strain Enterococcus mundtii CRL35. PMID:24855298
Insights from the genome annotation of Elizabethkingia anophelis from the malaria vector Anopheles gambiae. PMID:24842809
Comparative genomic and morphological analyses of Listeria phages isolated from farm environments. PMID:24837381
Genomic analyses of pneumococci from children with sickle cell disease expose host-specific bacterial adaptations and deficits in current interventions. PMID:24832453
Draft Genome Sequence of Clostridium scatologenes ATCC 25775, a Chemolithoautotrophic Acetogenic Bacterium Producing 3-Methylindole and 4-Methylphenol. PMID:24831152
Complete Genome of the Attenuated Sparfloxacin-Resistant Streptococcus agalactiae Strain 138spar. PMID:24831149
Draft Genome Sequence of an Antifungal Bacterium Isolated from the Breeding Environment of Dorcus hopei binodulosus. PMID:24831148
Draft Genome Sequence of Acid-Tolerant Clostridium drakei SL1T, a Potential Chemical Producer through Syngas Fermentation. PMID:24831144
Draft genome sequences of three arcobacter strains of pig and dairy cattle manure origin. PMID:24831143
Draft Genome Sequence of Pseudomonas aeruginosa Strain RB, a Bacterium Capable of Synthesizing Cadmium Selenide Nanoparticles. PMID:24831140
Draft Genome Sequence of Pectobacterium wasabiae Strain CFIA1002. PMID:24831134
Genomic insights into high exopolysaccharide-producing dairy starter bacterium Streptococcus thermophilus ASCC 1275. PMID:24827399
The use of metagenomic approaches to analyze changes in microbial communities. PMID:24826073
Characterization of nontypable Haemophilus influenzae isolates recovered from adult patients with underlying chronic lung disease reveals genotypic and phenotypic traits associated with persistent infection. PMID:24824990
Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. PMID:24824949
Oribacterium parvum sp. nov. and Oribacterium asaccharolyticum sp. nov., obligately anaerobic bacteria from the human oral cavity, and emended description of the genus Oribacterium. PMID:24824639
Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes. PMID:24821787
Genome analysis of Enterococcus faecalis bacteriophage IME-EF3 harboring a putative metallo-beta-lactamase gene. PMID:24818695
Bacteriophages of leuconostoc, oenococcus, and weissella. PMID:24817864
Tolerance of a phage element by Streptococcus pneumoniae leads to a fitness defect during colonization. PMID:24816604
Draft Genome Sequence of Lactobacillus sucicola JCM 15457T, a Motile Lactic Acid Bacterium Isolated from Oak Sap. PMID:24812225
Complete Genome Sequences of Lactobacillus johnsonii Strain N6.2 and Lactobacillus reuteri Strain TD1. PMID:24812223
Draft Genome Sequence of Erwinia mallotivora BT-MARDI, Causative Agent of Papaya Dieback Disease. PMID:24812220
Draft Genome Sequence of Geobacillus sp. Strain FW23, Isolated from a Formation Water Sample. PMID:24812215
Draft Genome Sequence of Stenotrophomonas maltophilia SeITE02, a Gammaproteobacterium Isolated from Selenite-Contaminated Mining Soil. PMID:24812214
Draft Genome Sequence of the Novel Thermoacidophilic Archaeon Acidianus copahuensis Strain ALE1, Isolated from the Copahue Volcanic Area in Neuquen, Argentina. PMID:24812211
Integration of bioinformatics to biodegradation. PMID:24808763
Comparative genomic analysis of malaria mosquito vector-associated novel pathogen Elizabethkingia anophelis. PMID:24803570
Functional genomic characterization of virulence factors from necrotizing fasciitis-causing strains of Aeromonas hydrophila. PMID:24795370
Transformable facultative thermophile Geobacillus stearothermophilus NUB3621 as a host strain for metabolic engineering. PMID:24788326
Genome Sequence of the Nonpathogenic Pseudomonas aeruginosa Strain ATCC 15442. PMID:24786961
Draft Genome Sequence of the Gluconobacter oxydans Strain DSM 2003, an Important Biocatalyst for Industrial Use. PMID:24786959
Draft Genome Sequence of Fervidicella metallireducens Strain AeBT, an Iron-Reducing Thermoanaerobe from the Great Artesian Basin. PMID:24786951
Draft genome sequences of two Bacillus thuringiensis strains and characterization of a putative 41.9-kDa insecticidal toxin. PMID:24784323
Population and genomic analysis of the genus Halorubrum. PMID:24782836
Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity. PMID:24773920
Presence of extensive Wolbachia symbiont insertions discovered in the genome of its host Glossina morsitans morsitans. PMID:24763283
Complete Genome Sequence of Phage-Like Plasmid pECOH89, Encoding CTX-M-15. PMID:24762941
Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae. PMID:24762940
Draft Genome Sequence of Lysobacter capsici AZ78, a Bacterium Antagonistic to Plant-Pathogenic Oomycetes. PMID:24762937
Streptococcus mitis strains causing severe clinical disease in cancer patients. PMID:24750901
The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. PMID:24749011
Amoebal endosymbiont Neochlamydia genome sequence illuminates the bacterial role in the defense of the host amoebae against Legionella pneumophila. PMID:24747986
Complete Genome Sequence of a Virulent Streptococcus agalactiae Strain, 138P, Isolated from Diseased Nile Tilapia. PMID:24744333
Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus CUHK_188 (ST188), a Health Care-Associated Bacteremic Isolate from Hong Kong. PMID:24744328
Draft Genome Sequence of Campylobacter corcagiensis Strain CIT045T, a Representative of a Novel Campylobacter Species Isolated from Lion-Tailed Macaques (Macaca silenus). PMID:24744327
Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire. PMID:24735398
Comparative genomic analysis and virulence differences in closely related salmonella enterica serotype heidelberg isolates from humans, retail meats, and animals. PMID:24732280
Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate. PMID:24723723
Draft Genome Sequences of Six Listeria monocytogenes Strains Isolated from Dairy Products from a Processing Plant in Southern Italy. PMID:24723720
Whole-Genome Sequence of "Candidatus Liberibacter asiaticus" from Guangdong, China. PMID:24723715
Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus KT/Y21, a Sequence Type 772 (ST772) Strain Isolated from a Pediatric Blood Sample in Terengganu, Malaysia. PMID:24723714
Complete Genome Sequences of Nitrofurantoin-Sensitive and -Resistant Escherichia coli ST540 and ST2747 Strains. PMID:24723707
Draft Genome Sequence of Magnetospirillum sp. Strain SO-1, a Freshwater Magnetotactic Bacterium Isolated from the Ol'khovka River, Russia. PMID:24723706
Draft Genome Sequence of the Aromatic Hydrocarbon-Degrading Bacterium Sphingobium sp. Strain Ant17, Isolated from Antarctic Soil. PMID:24723703
Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1. PMID:24721679
Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex. PMID:24713045
Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 Clade. PMID:24710305
Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials. PMID:24710002
Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction. PMID:24708835
Perfrin, a novel bacteriocin associated with netB positive Clostridium perfringens strains from broilers with necrotic enteritis. PMID:24708344
Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria. PMID:24706784
Draft Genome Sequences of Psychrobacter Strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, Isolated Preferentially from Frozen Aquatic Organisms. PMID:24699965
Draft Genome Sequence of the Multidrug-Resistant Escherichia coli Strain LR09, Isolated from a Wastewater Treatment Plant. PMID:24699962
Complete Genome Sequence of Pseudomonas aeruginosa Strain YL84, a Quorum-Sensing Strain Isolated from Compost. PMID:24699957
Improved Hybrid Genome Assemblies of Two Strains of Bacteroides xylanisolvens, SD_CC_1b and SD_CC_2a, Obtained Using Illumina and 454 Sequencing Technologies. PMID:24699955
Genome Sequence of the Acrystalliferous Bacillus thuringiensis Serovar Israelensis Strain 4Q7, Widely Used as a Recombination Host. PMID:24699954
Complete Genome Sequence of the Edwardsiella ictaluri-Specific Bacteriophage PEi21, Isolated from River Water in Japan. PMID:24699953
Draft genome sequences of two arcobacter strains isolated from human feces. PMID:24699950
Genomic and phenotypic characterization of Vibrio cholerae non-O1 isolates from a US Gulf Coast cholera outbreak. PMID:24699521
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals. PMID:24689900
Acetic acid bacteria genomes reveal functional traits for adaptation to life in insect guts. PMID:24682158
A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter. PMID:24676150
Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108T and L. composti JCM 14202T, Isolated from Compost of Distilled Shōchū Residue. PMID:24675866
Genome Sequence of the Octopine-Type Agrobacterium tumefaciens Strain Ach5. PMID:24675863
Genome Sequence of the Quorum-Quenching Rhodococcus erythropolis Strain R138. PMID:24675862
Complete Genome Sequence for the Fusarium Head Blight Antagonist Bacillus amyloliquefaciens Strain TrigoCor 1448. PMID:24675861
Draft Genome Sequence of the Antarctic Polyextremophile Nesterenkonia sp. Strain AN1. PMID:24675854
Unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette. PMID:24669202
Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity. PMID:24667708
Draft genome comparison of representatives of the three dominant genotype groups of dairy Bacillus licheniformis strains. PMID:24657871
Draft Genome Sequences of Cyclodextrin-Producing Alkaliphilic Bacillus Strains JCM 19045, JCM 19046, and JCM 19047. PMID:24652985
Draft Genome Sequence of Paenibacillus pini JCM 16418T, Isolated from the Rhizosphere of Pine Tree. PMID:24652984
Genomes of Two Clinical Isolates of Mycobacterium tuberculosis from Odisha, India. PMID:24652981
Draft Genome Sequence of the Naphthalene Degrader Herbaspirillum sp. Strain RV1423. PMID:24652979
Draft Genome Sequence of Xylella fastidiosa Pear Leaf Scorch Strain in Taiwan. PMID:24652975
Draft Genome Sequence of Israeli Outbreak-Associated Vibrio vulnificus Biotype 3 Clinical Isolate BAA87. PMID:24652973
Comparative genome analysis of Lactobacillus rhamnosus clinical isolates from initial stages of dental pulp infection: identification of a new exopolysaccharide cluster. PMID:24632842
Genomic evidence reveals the extreme diversity and wide distribution of the arsenic-related genes in Burkholderiales. PMID:24632831
Draft Genome Sequence of Bacillus thuringiensis Serovar Tolworthi Strain Na205-3, an Isolate Toxic for Helicoverpa armigera. PMID:24625875
Complete Genome Sequence of Vibrio parahaemolyticus Environmental Strain UCM-V493. PMID:24625868
Genome Sequences of Four Italian Streptococcus thermophilus Strains of Dairy Origin. PMID:24625867
Draft Genome Sequence of Campylobacter coli Strain IPSID-1 Isolated from a Patient with Immunoproliferative Small Intestinal Disease. PMID:24625865
The PAS domain-containing histidine kinase RpfS is a second sensor for the diffusible signal factor of Xanthomonas campestris. PMID:24617591
Comparative genomic analysis of KPC-encoding pKpQIL-like plasmids and their distribution in New Jersey and New York Hospitals. PMID:24614371
Draft Genome Sequences of Nine Salmonella enterica Serovar Bovismorbificans Isolates from Various Sources. PMID:24604660
Whole-Genome Sequences of Six Salmonella enterica Serovar Bovismorbificans Isolates Associated with a 2011 Multistate Hummus-Borne Outbreak. PMID:24604659
Draft Genome Sequence of the Antitrypanosomally Active Sponge-Associated Bacterium Actinokineospora sp. Strain EG49. PMID:24604655
Genome Sequence of Luteimonas huabeiensis HB-2, a Novel Species of Luteimonas with High Oil Displacement Efficiency. PMID:24604652
Comparative Genomic Analysis of Multidrug-Resistant Pseudomonas aeruginosa Clinical Isolates VRFPA06 and VRFPA08 with VRFPA07. PMID:24604649
Genome Sequence of a Bacillus anthracis Outbreak Strain from Zambia, 2011. PMID:24604644
Draft Genome Sequence of Clostridium sp. Strain Ade.TY, a New Biohydrogen- and Biochemical-Producing Bacterium Isolated from Landfill Leachate Sludge. PMID:24604640
Draft Genome Sequence of Clostridium bifermentans Strain WYM, a Promising Biohydrogen Producer Isolated from Landfill Leachate Sludge. PMID:24604639
Draft Genome Sequence of Clostridium perfringens Strain JJC, a Highly Efficient Hydrogen Producer Isolated from Landfill Leachate Sludge. PMID:24604637
Draft Genome Sequence of Vibrio parahaemolyticus Strain M0605, Which Causes Severe Mortalities of Shrimps in Mexico. PMID:24604636
Analysis of anoxybacillus genomes from the aspects of lifestyle adaptations, prophage diversity, and carbohydrate metabolism. PMID:24603481
Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin. PMID:24599070
New hydrocarbon degradation pathways in the microbial metagenome from Brazilian petroleum reservoirs. PMID:24587220
Genome sequencing of Listeria monocytogenes "Quargel" listeriosis outbreak strains reveals two different strains with distinct in vitro virulence potential. PMID:24587155
Whole genome analysis of a community-associated methicillin-resistant Staphylococcus aureus ST59 isolate from a case of human sepsis and severe pneumonia in China. PMID:24586619
Purification and characterization of phosphonoglycans from Glycomyces sp. strain NRRL B-16210 and Stackebrandtia nassauensis NRRL B-16338. PMID:24584498
A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis. PMID:24581117
StaphyloBase: a specialized genomic resource for the staphylococcal research community. PMID:24578355
Insight into the Draft Genome Sequence of Human Isolate Lactobacillus rhamnosus LR231, a Bacterium with Probiotic Potential. PMID:24578273
Development of pVCR94ΔX from Vibrio cholerae, a prototype for studying multidrug resistant IncA/C conjugative plasmids. PMID:24567731
Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection. PMID:24567124
Complete nucleotide sequences of two blaKPC-2-bearing IncN Plasmids isolated from sequence type 442 Klebsiella pneumoniae clinical strains four years apart. PMID:24566176
Genomic characterization of a Helicobacter pylori isolate from a patient with gastric cancer in China. PMID:24565107
The genome of Clostridium difficile 5.3. PMID:24565059
Draft Genome Sequence of Lactobacillus rhamnosus 2166. PMID:24558254
Draft Genome Sequence of Lactobacillus crispatus 2029. PMID:24558253
Draft Genome Sequence of Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae Isolated from a Patient in Lebanon. PMID:24558251
Genome Sequence of the Probiotic Strain Lactobacillus rhamnosus (Formerly Lactobacillus casei) LOCK908. PMID:24558250
Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community. PMID:24558248
Draft Genome Sequence of the Boron-Tolerant and Moderately Halotolerant Bacterium Gracilibacillus boraciitolerans JCM 21714T. PMID:24558242
Draft Genome Sequence of mc251, a Highly Hydrogen Peroxide-Resistant Mycobacterium smegmatis Mutant Strain. PMID:24558240
Draft Genome Sequencing of Methanobrevibacter oralis Strain JMR01, Isolated from the Human Intestinal Microbiota. PMID:24558239
Genome Sequence of Lactobacillus fabifermentans Strain T30PCM01, Isolated from Fermenting Grape Marc. PMID:24558238
Draft Genome Sequence of Multidrug-Resistant Acinetobacter baumannii Strain MMC4, Isolated from a Patient in Tennessee. PMID:24558237
Draft Genome Sequence of the Haloacid-Degrading Burkholderia caribensis Strain MBA4. PMID:24558235
Draft Genome Sequence of Arcobacter cibarius Strain LMG21996T, Isolated from Broiler Carcasses. PMID:24558232
Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Gallinarum Biovar Pullorum Strain FCAV198, a Brazilian Chicken Pathogen. PMID:24558231
Taxonomical and functional microbial community selection in soybean rhizosphere. PMID:24553468
Genome Sequence of Pseudomonas azelaica HBP1, Which Catabolizes 2-Hydroxybiphenyl Fungicide. PMID:24526653
Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from the Gut of a Termite. PMID:24526645
Genome Sequences of Streptococcus thermophilus Strains MTH17CL396 and M17PTZA496 from Fontina, an Italian PDO Cheese. PMID:24526643
Draft Genome Sequences of Two Cellulolytic Paenibacillus sp. Strains, MAEPY1 and MAEPY2, from Malaysian Landfill Leachate. PMID:24526641
Draft Genome Sequence of the Toxic Bloom-Forming Cyanobacterium Aphanizomenon flos-aquae NIES-81. PMID:24526634
Draft Genome Sequence of Root-Colonizing Bacterium Bacillus sp. Strain PTS-394. PMID:24526631
Genome Sequence of Fusobacterium nucleatum Strain W1481, a Possible New Subspecies Isolated from a Periodontal Pocket. PMID:24526626
Comparative genomics of unintrogressed Campylobacter coli clades 2 and 3. PMID:24524824
Genome sequence and comparative analysis of a Vibrio cholerae O139 strain E306 isolated from a cholera case in China. PMID:24517211
Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species. PMID:24516375
Genomic reconnaissance of clinical isolates of emerging human pathogen Mycobacterium abscessus reveals high evolutionary potential. PMID:24515248
Identification of flgZ as a flagellar gene encoding a PilZ domain protein that regulates swimming motility and biofilm formation in Pseudomonas. PMID:24504373
Genome Sequence of Streptomyces exfoliatus DSMZ 41693, a Source of Poly(3-Hydroxyalkanoate)-Degrading Enzymes. PMID:24504004
Draft Genome Sequence of Kocuria palustris PEL. PMID:24504000
First draft genome sequence of a member of the genus planomicrobium, isolated from the chandra river, India. PMID:24503999
Complete Genome Sequence of Mycobacterium avium subsp. paratuberculosis, Isolated from Human Breast Milk. PMID:24503996
Draft Genome and Plasmid Sequences of Chlamydia pneumoniae Strain B21 from an Australian Endangered Marsupial, the Western Barred Bandicoot. PMID:24503994
Complete Genome Sequence of the Pseudomonas aeruginosa Bacteriophage phiIBB-PAA2. PMID:24503992
Draft Genome Sequence of the Polyextremophilic Halorubrum sp. Strain AJ67, Isolated from Hyperarsenic Lakes in the Argentinian Puna. PMID:24503991
Genome Sequence of Legionella anisa, Isolated from a Respiratory Sample, Using an Amoebal Coculture Procedure. PMID:24503989
Draft Genome Sequence of Textile Azo Dye-Decolorizing and -Degrading Pseudomonas aeruginosa Strain PFK10, Isolated from the Common Effluent Treatment Plant of the Ankleshwar Industrial Area of Gujarat, India. PMID:24503984
Whole-Genome Shotgun Sequence of Bacillus amyloliquefaciens Strain UASWS BA1, a Bacterium Antagonistic to Plant Pathogenic Fungi. PMID:24503983
Draft Genome Sequence of Petroleum Hydrocarbon-Degrading Pseudomonas aeruginosa Strain PK6, Isolated from the Saurashtra Region of Gujarat, India. PMID:24503980
Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895. PMID:24501654
Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31. PMID:24501644
Draft Genome Sequence of Amphibacillus jilinensis Y1(T), a Facultatively Anaerobic, Alkaliphilic and Halotolerant Bacterium. PMID:24501633
Non contiguous-finished genome sequence of Pseudomonas syringae pathovar syringae strain B64 isolated from wheat. PMID:24501627
Molecular investigation of bacterial communities on intravascular catheters: no longer just Staphylococcus. PMID:24500600
Mining locus tags in PubMed Central to improve microbial gene annotation. PMID:24499370
Identification of nitrogen-fixing genes and gene clusters from metagenomic library of acid mine drainage. PMID:24498417
Insights into naturally minimised Streptomyces albus J1074 genome. PMID:24495463
Identification of bacteriophages for biocontrol of the kiwifruit canker phytopathogen Pseudomonas syringae pv. actinidiae. PMID:24487530
Close relationship of a novel Flavobacteriaceae α-amylase with archaeal α-amylases and good potentials for industrial applications. PMID:24485248
Genome Sequence of the Emerging Plant Pathogen Dickeya solani Strain RNS 08.23.3.1A. PMID:24482527
Draft Genome Sequence of the Aquatic Phosphorus-Solubilizing and -Mineralizing Bacterium Bacillus sp. Strain CPSM8. PMID:24482525
Draft Genome Sequence of Bacillus thuringiensis Strain BrMgv02-JM63, a Chitinolytic Bacterium Isolated from Oil-Contaminated Mangrove Soil in Brazil. PMID:24482524
Draft Genome Sequence of Pseudomonas nitroreducens Strain TX1, Which Degrades Nonionic Surfactants and Estrogen-Like Alkylphenols. PMID:24482523
Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T. PMID:24482522
Draft Genome Sequence of Urease-Producing Sporosarcina pasteurii with Potential Application in Biocement Production. PMID:24482521
F1 and tbilisi are closely related brucellaphages exhibiting some distinct nucleotide variations which determine the host specificity. PMID:24482520
Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine. PMID:24482517
Draft Genome Sequence of Pseudomonas chlororaphis YL-1, a Biocontrol Strain Suppressing Plant Microbial Pathogens. PMID:24482513
Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a. PMID:24482507
First Complete Genome Sequence of Escherichia albertii Strain KF1, a New Potential Human Enteric Pathogen. PMID:24482506
Draft Genome Sequence of Pseudoalteromonas sp. Strain NW 4327 (MTCC 11073, DSM 25418), a Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile. PMID:24482504
An environmental bacterial taxon with a large and distinct metabolic repertoire. PMID:24476823
Comparative genomics of Cylindrospermopsis raciborskii strains with differential toxicities. PMID:24476316
Novel giant siphovirus from Bacillus anthracis features unusual genome characteristics. PMID:24475065
Pseudomonas putida CSV86: a candidate genome for genetic bioaugmentation. PMID:24475028
PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations. PMID:24470574
First genome sequences of Achromobacter phages reveal new members of the N4 family. PMID:24468270
The discovery of phiAGATE, a novel phage infecting Bacillus pumilus, leads to new insights into the phylogeny of the subfamily Spounavirinae. PMID:24466180
Application of microarray and functional-based screening methods for the detection of antimicrobial resistance genes in the microbiomes of healthy humans. PMID:24466089
CoryneBase: Corynebacterium genomic resources and analysis tools at your fingertips. PMID:24466021
Scrutinizing virus genome termini by high-throughput sequencing. PMID:24465717
Grimontia indica AK16(T), sp. nov., isolated from a seawater sample reports the presence of pathogenic genes similar to Vibrio genus. PMID:24465608
Presence and analysis of plasmids in human and animal associated arcobacter species. PMID:24465575
Whole-genome single-nucleotide-polymorphism analysis for discrimination of Clostridium botulinum group I strains. PMID:24463972
Vibrio coralliilyticus strain OCN008 is an etiological agent of acute Montipora white syndrome. PMID:24463971
Complete Genome Sequence of Highly Adherent Pseudomonas aeruginosa Small-Colony Variant SCV20265. PMID:24459283
Complete Genome Sequence of Mycobacterium tuberculosis Strain MtURU-001, Isolated from a Rapidly Progressing Outbreak in Uruguay. PMID:24459279
Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana Strains Isolated from Agricultural Sources. PMID:24459266
Draft Genome Sequence of a Human-Associated Isolate of Methanobrevibacter arboriphilicus, the Lowest-G+C-Content Archaeon. PMID:24459264
Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite. PMID:24459258
Phages of non-dairy lactococci: isolation and characterization of ΦL47, a phage infecting the grass isolate Lactococcus lactis ssp. cremoris DPC6860. PMID:24454309
Genome Sequence of Martelella sp. Strain AD-3, a Moderately Halophilic Polycyclic Aromatic Hydrocarbon-Degrading Bacterium. PMID:24435873
Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61. PMID:24435871
Complete Genome Sequence of Hyphomicrobium nitrativorans Strain NL23, a Denitrifying Bacterium Isolated from Biofilm of a Methanol-Fed Denitrification System Treating Seawater at the Montreal Biodome. PMID:24435868
Whole-Genome Sequences of Streptococcus thermophilus Strains TH1435 and TH1436, Isolated from Raw Goat Milk. PMID:24435859
Genome Sequence of the Sulfitobacter sp. Strain 2047-Infecting Lytic Phage {Phi}CB2047-B. PMID:24435853
Draft Genome Sequence of the Methyl Parathion (Pesticide) Degrading Bacterium Pseudomonas spp. MR3. PMID:24426179
Draft Genome Sequence of the Endophytic Bacterium Enterobacter spp. MR1, Isolated from Drought Tolerant Plant (Butea monosperma). PMID:24426178
Genomic comparison of sporeforming bacilli isolated from milk. PMID:24422886
Comparative genome analysis of Campylobacter fetus subspecies revealed horizontally acquired genetic elements important for virulence and niche specificity. PMID:24416416
Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter. PMID:24416233
Safety of the surrogate microorganism Enterococcus faecium NRRL B-2354 for use in thermal process validation. PMID:24413604
Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7. PMID:24410921
Comparative genome analysis of the closely related Synechocystis strains PCC 6714 and PCC 6803. PMID:24408876
Draft Genome Sequence of Lactobacillus plantarum 2165. PMID:24407651
Draft genome sequence of atrazine-utilizing bacteria isolated from Indian agricultural soil. PMID:24407646
Draft Genome Sequence of a Moderately Halophilic Bacillus megaterium Strain, MSP20.1, Isolated from a Saltern of the Little Rann of Kutch, India. PMID:24407642
Insight into the First Draft Genome Sequence of the Genus Sediminibacillus, Sediminibacillus halophilus Strain NSP9.3. PMID:24407641
Draft Genome Sequence of Corynebacterium ulcerans FRC58, Isolated from the Bronchitic Aspiration of a Patient in France. PMID:24407640
Genome Sequence of Lactobacillus plantarum EGD-AQ4, Isolated from Fermented Product of Northeast India. PMID:24407637
Draft Genome Sequence of Pseudomonas sp. Strain 2-92, a Biological Control Strain Isolated from a Field Plot Under Long-Term Mineral Fertilization. PMID:24407636
Draft Genome Sequence of Saccharopolyspora rectivirgula. PMID:24407634
Draft Genome Sequence of Clostridium mangenotii TR, Isolated from the Fecal Material of a Timber Rattlesnake. PMID:24407632
Draft Genome Sequence of Petroleum Oil-Degrading Marine Bacterium Pseudomonas taeanensis Strain MS-3, Isolated from a Crude Oil-Contaminated Seashore. PMID:24407626
Complete sequence of a KPC-producing IncN multidrug-resistant plasmid from an epidemic Escherichia coli sequence type 131 strain in China. PMID:24395232
The complete nucleotide sequence of the carbapenem resistance-conferring conjugative plasmid pLD209 from a Pseudomonas putida clinical strain reveals a chimeric design formed by modules derived from both environmental and clinical bacteria. PMID:24395220
Novel insight into the genetic context of the cadAB genes from a 4-chloro-2-methylphenoxyacetic acid-degrading Sphingomonas. PMID:24391756
ITEP: an integrated toolkit for exploration of microbial pan-genomes. PMID:24387194
Comparative genomics analysis of Streptococcus isolates from the human small intestine reveals their adaptation to a highly dynamic ecosystem. PMID:24386196
Insight into the evolution of Vibrio vulnificus biotype 3's genome. PMID:24385974
Draft Genome Sequence of the Alga-Aggregating Bacterium Bacillus sp. Strain RP1137. PMID:24385572
Genome Sequence of the Boron-Tolerant and -Requiring Bacterium Bacillus boroniphilus. PMID:24385571
Comparative genomic analyses of the cyanobacterium, Lyngbya aestuarii BL J, a powerful hydrogen producer. PMID:24376438
Comparative analysis of the full genome of Helicobacter pylori isolate Sahul64 identifies genes of high divergence. PMID:24375107
Genome Sequence of the Pigment-Producing Bacterium Pseudogulbenkiania ferrooxidans, Isolated from Loktak Lake. PMID:24371207
Complete Genome Sequence of Pediococcus pentosaceus Strain SL4. PMID:24371205
Draft Genome Sequence of an Obligate and Moderately Halophilic Bacterium, Thalassobacillus devorans Strain MSP14, the First Draft Genome of the Genus Thalassobacillus. PMID:24371204
Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow. PMID:24369854
Molecular and biochemical analyses of CbCel9A/Cel48A, a highly secreted multi-modular cellulase by Caldicellulosiruptor bescii during growth on crystalline cellulose. PMID:24358340
Draft Genome Sequence of the Obligate Halophilic Bacillus sp. Strain NSP22.2, Isolated from a Seasonal Salt Marsh of the Great Rann of Kutch, India. PMID:24356848
Complete Genome Sequence of Bacillus subtilis Strain PY79. PMID:24356846
High-Quality Draft Genome Sequence of Bifidobacterium longum E18, Isolated from a Healthy Adult. PMID:24356845
Draft Genome Sequence of the Arsenite-Oxidizing Strain Aliihoeflea sp. 2WW, Isolated from Arsenic-Contaminated Groundwater. PMID:24356838
Complete Genome Sequence of Bacteroidales Strain CF from a Chloroform-Dechlorinating Enrichment Culture. PMID:24356833
Complete Genome Sequence of Exiguobacterium sp. Strain MH3, Isolated from Rhizosphere of Lemna minor. PMID:24356831
Draft genome sequences for oil-degrading bacterial strains from beach sands impacted by the deepwater horizon oil spill. PMID:24356826
Draft genome sequences of two Bifidobacterium sp. from the honey bee (Apis mellifera). PMID:24350840
Helicobacter pylori genomic microevolution during naturally occurring transmission between adults. PMID:24340004
Complete Genome Sequence of the Campylobacter coli Clinical Isolate 15-537360. PMID:24336384
Genome Sequence of an Enterobacter helveticus Strain, 1159/04 (LMG 23733), Isolated from Fruit Powder. PMID:24336376
Draft Genome Sequence of Salmonella enterica subsp. enterica Serotype Oranienburg Strain S-76, Isolated from an Aquatic Environment. PMID:24336368
Draft Genome Sequence of Salmonella enterica subsp. enterica Serotype Saintpaul Strain S-70, Isolated from an Aquatic Environment. PMID:24336367
Draft Genome Sequence of Enterococcus sp. Strain HSIEG1, Isolated from the Human Small Intestine. PMID:24336366
The third replicon of members of the Burkholderia cepacia Complex, plasmid pC3, plays a role in stress tolerance. PMID:24334662
Genome anatomy of the gastrointestinal pathogen, Vibrio parahaemolyticus of crustacean origin. PMID:24330647
A phylogenomic approach to bacterial subspecies classification: proof of concept in Mycobacterium abscessus. PMID:24330254
Genetic variation of a bacterial pathogen within individuals with cystic fibrosis provides a record of selective pressures. PMID:24316980
The genome sequence of 'Mycobacterium massiliense' strain CIP 108297 suggests the independent taxonomic status of the Mycobacterium abscessus complex at the subspecies level. PMID:24312320
Genome Sequence of Parvimonas micra Strain A293, Isolated from an Abdominal Abscess from a Patient in the United Kingdom. PMID:24309744
Draft Genome Sequence of Plant-Growth-Promoting Rhizobacterium Serratia fonticola Strain AU-AP2C, Isolated from the Pea Rhizosphere. PMID:24309742
Draft Genome Sequence of the Psychrophilic and Alkaliphilic Rhodonellum psychrophilum Strain GCM71T. PMID:24309741
Complete Genome Sequence of Staphylococcus aureus Z172, a Vancomycin-Intermediate and Daptomycin-Nonsusceptible Methicillin-Resistant Strain Isolated in Taiwan. PMID:24309740
Genome Sequence of Enterobacter turicensis Strain 610/05 (LMG 23731), Isolated from Fruit Powder. PMID:24309739
Genome Sequences of Two Enterobacter pulveris Strains, 601/05T (=LMG 24057T =DSM 19144T) and 1160/04 (=LMG 24058 =DSM 19146), Isolated from Fruit Powder. PMID:24309737
Complete Genome Sequence of the Epidemic and Highly Virulent CTX-M-15-Producing H30-Rx Subclone of Escherichia coli ST131. PMID:24309736
Draft Genome Sequence of Veillonella parvula HSIVP1, Isolated from the Human Small Intestine. PMID:24309734
Draft Genome Sequence of Plant Growth-Promoting Rhizobacterium Pantoea sp. Strain AS-PWVM4. PMID:24309733
Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion. PMID:24304812
A novel hybrid SCCmec-mecC region in Staphylococcus sciuri. PMID:24302651
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). PMID:24293654
Genome Sequence of the Extreme Obligate Alkaliphile Bacillus marmarensis Strain DSM 21297. PMID:24285666
Complete Genome Sequence of Lactococcus lactis subsp. lactis KLDS4.0325. PMID:24285665
Complete Genome Sequence of the Mesoplasma florum W37 Strain. PMID:24285658
Draft Genome Sequences of Multidrug-Resistant Acinetobacter sp. Strains from Colombian Hospitals. PMID:24285656
Draft Genome Sequence of Lactobacillus fermentum Strain 3872. PMID:24285652
Draft Genome Sequence of Lactobacillus jensenii Strain MD IIE-70(2). PMID:24285651
Draft Genome Sequence of Pseudomonas sp. Strain CMAA 1215, a Plant Growth-Promoting Bacterium Isolated from a Brazilian Mangrove. PMID:24285649
Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T). PMID:24285647
Genome Sequence of Rickettsia gravesii, Isolated from Western Australian Ticks. PMID:24285646
Draft Genome Sequence of Serratia fonticola UTAD54, a Carbapenem-Resistant Strain Isolated from Drinking Water. PMID:24285645
Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions. PMID:24281148
Implication of lateral genetic transfer in the emergence of Aeromonas hydrophila isolates of epidemic outbreaks in channel catfish. PMID:24278351
Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach. PMID:24278158
Draft genome sequence of Xanthomonas fragariae reveals reductive evolution and distinct virulence-related gene content. PMID:24274055
Whole-Genome Sequencing of Lactobacillus shenzhenensis Strain LY-73T. PMID:24265500
Draft Genome Sequence of Serratia fonticola LMG 7882T Isolated from Freshwater. PMID:24265499
Genome Sequences of Clinical Vibrio cholerae Isolates from an Oyster-Borne Cholera Outbreak in Florida. PMID:24265497
Draft Genome Sequence of a Multidrug-Resistant Clinical Isolate of Mycobacterium tuberculosis Belonging to a Novel Spoligotype. PMID:24265496
Genome Sequence of Dyella ginsengisoli Strain LA-4, an Efficient Degrader of Aromatic Compounds. PMID:24265495
Complete Genome Sequence of Channel Catfish Gastrointestinal Septicemia Isolate Edwardsiella tarda C07-087. PMID:24265493
Draft Genome Sequence of Lactobacillus brevis Strain EW, a Drosophila Gut Pathobiont. PMID:24265492
Draft Genome Sequence of Lactobacillus plantarum Strain WJL, a Drosophila Gut Symbiont. PMID:24265491
Draft Genome Sequence of Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolate OSDD515, Belonging to the Uganda I Genotype. PMID:24265488
Comparative genomic characterization of three Streptococcus parauberis strains in fish pathogen, as assessed by wide-genome analyses. PMID:24260382
Comparative genome analysis of Megasphaera sp. reveals niche specialization and its potential role in the human gut. PMID:24260205
Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PMID:24250794
The first NDM metallo-β-lactamase-producing Enterobacteriaceae isolate in Poland: evolution of IncFII-type plasmids carrying the bla(NDM-1) gene. PMID:24247128
Streptococcus pneumoniae serine protease HtrA, but not SFP or PrtA, is a major virulence factor in pneumonia. PMID:24244609
Characterization of Enterococcus faecalis phage IME-EF1 and its endolysin. PMID:24236180
Draft Genome Sequence of Sphingobium ummariense Strain RL-3, a Hexachlorocyclohexane-Degrading Bacterium. PMID:24233594
Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain DSM 11915. PMID:24233593
Draft Genome Sequence of a Plant Growth-Promoting Rhizobacterium, Serratia fonticola Strain AU-P3(3). PMID:24233592
Draft Genome Sequence of Loktanella cinnabarina LL-001T, Isolated from Deep-Sea Floor Sediment. PMID:24233588
Genomic versatility and functional variation between two dominant heterotrophic symbionts of deep-sea Osedax worms. PMID:24225886
PATRIC, the bacterial bioinformatics database and analysis resource. PMID:24225323
Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts. PMID:24223859
Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells. PMID:24213699
Draft Genome Sequence of an Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolate of the Ural Strain OSDD493. PMID:24201204
Draft Genome Sequence of Corynebacterium pseudodiphtheriticum Strain 090104 "Sokolov". PMID:24201200
Draft Genome Sequence of Psychrobacter aquaticus Strain CMS 56T, Isolated from a Cyanobacterial Mat Sample Collected from Water Bodies in the McMurdo Dry Valley Region of Antarctica. PMID:24201199
Draft Genome Sequence of Sphingobium sp. Strain KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Isolated from Cattle Pasture Soil. PMID:24201196
Draft Genome Sequence of the Plant Pathogen Dickeya zeae DZ2Q, Isolated from Rice in Italy. PMID:24201194
Draft Genome Sequence of Beta-Hemolytic Streptococcus iniae KCTC 11634. PMID:24201192
Draft Genome Sequence of Mycobacterium abscessus subsp. bolletii INCQS 00594. PMID:24201191
Genome Sequence of a Strain of the Human Pathogenic Bacterium Pseudomonas alcaligenes That Caused Bloodstream Infection. PMID:24179116
SIMAP--the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage. PMID:24165881
Comparative metabolic systems analysis of pathogenic Burkholderia. PMID:24163337
Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities. PMID:24162572
Draft Genome Sequence of Bacillus sp. Strain NSP2.1, a Nonhalophilic Bacterium Isolated from the Salt Marsh of the Great Rann of Kutch, India. PMID:24158559
Draft Genome Sequences of Bordetella hinzii and Bordetella trematum. PMID:24158552
Genome Sequence of Rhodococcus sp. Strain BCP1, a Biodegrader of Alkanes and Chlorinated Compounds. PMID:24158549
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community. PMID:24152715
Phenotypic and genomic characterization of the Antarctic bacterium Gillisia sp. CAL575, a producer of antimicrobial compounds. PMID:24150693
Insights of biosurfactant producing Serratia marcescens strain W2.3 isolated from diseased tilapia fish: a draft genome analysis. PMID:24148830
ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes. PMID:24145532
Nonclinical and clinical Enterococcus faecium strains, but not Enterococcus faecalis strains, have distinct structural and functional genomic features. PMID:24141120
Draft Genome Sequence of the Extremely Halophilic Bacillus sp. Strain SB49, Isolated from a Salt Crystallizer Pond of the Little Rann of Kutch, India. PMID:24136852
Draft Genome Sequence of Rhodococcus erythropolis DN1, a Crude Oil Biodegrader. PMID:24136850
Draft Genome Sequence of the Dimorphic Prosthecate Bacterium Brevundimonas abyssalis TAR-001T. PMID:24136847
Genome Sequences of Salmonella enterica Serotype Typhimurium Blood Clinical Isolate ST4848/06 and Stool Isolate ST1489/06. PMID:24136846
Genome Sequences of Listeria monocytogenes Serotype 4b Variant Strains Isolated from Clinical and Environmental Sources. PMID:24136844
Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2. PMID:24130670
pIMP-PH114 carrying bla IMP-4 in a Klebsiella pneumoniae strain is closely related to other multidrug-resistant IncA/C2 plasmids. PMID:24121549
Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach. PMID:24118942
Draft Genome Sequence of Bacillus sp. Strain NSP9.1, a Moderately Halophilic Bacterium Isolated from the Salt Marsh of the Great Rann of Kutch, India. PMID:24115550
Draft Genome Sequence of a Meningitic Isolate of Cronobacter sakazakii Clonal Complex 4, Strain 8399. PMID:24115548
Draft Genome Sequence of Bacillus sp. Strain SB47, an Obligate Extreme Halophile Isolated from a Salt Pan of the Little Rann of Kutch, India. PMID:24115544
Draft Genome Sequence of Brucella melitensis Strain ADMAS-G1, Isolated from Placental Fluids of an Aborted Goat. PMID:24115541
Draft Genome Sequence of Xylella fastidiosa subsp. multiplex Strain Griffin-1 from Quercus rubra in Georgia. PMID:24115539
Genetic variation in the Staphylococcus aureus 8325 strain lineage revealed by whole-genome sequencing. PMID:24098817
Whole-genome sequences of five oyster-associated bacteria show potential for crude oil hydrocarbon degradation. PMID:24092793
Draft Genome Sequence of the Mycobacterium tuberculosis Strain 43-16836, Belonging to the Indo-Oceanic Lineage, Isolated From Tuberculous Meningitis in Thailand. PMID:24092792
Draft Genome Sequence of Aeromonas veronii Hm21, a Symbiotic Isolate from the Medicinal Leech Digestive Tract. PMID:24092791
Genome Sequence of the Quorum-Sensing-Signal-Producing Nonpathogen Agrobacterium tumefaciens Strain P4. PMID:24092790
Draft Genome Sequence of Vibrio coralliilyticus Strain OCN008, Isolated from Kane'ohe Bay, Hawai'i. PMID:24092784
Genome Sequence of Streptococcus parauberis Strain KCTC11980, Isolated from Diseased Paralichthys olivaceus. PMID:24092782
Genome Sequence of the Fructan-Degrading Organism Marinimicrobium sp. Strain LS-A18, Isolated from a Marine Solar Saltern. PMID:24092780
Genome Sequence of Marine Bacterium Idiomarina sp. Strain 28-8, Isolated from Korean Ark Shells. PMID:24092779
Improvement of plant growth and seed yield in Jatropha curcas by a novel nitrogen-fixing root associated Enterobacter species. PMID:24083555
Tracking the establishment of local endemic populations of an emergent enteric pathogen. PMID:24082120
Draft Genome Sequences of Three Newly Identified Species in the Genus Cronobacter, C. helveticus LMG23732T, C. pulveris LMG24059, and C. zurichensis LMG23730T. PMID:24072872
Draft Genome Sequence of the Earliest Cronobacter sakazakii Sequence Type 4 Strain, NCIMB 8272. PMID:24072871
Draft Genome Sequence of Exopolysaccharide-Producing Thermophilic Bacterium Brevibacillus thermoruber Strain 423. PMID:24072869
Genome Sequence of Lactobacillus fermentum Strain MTCC 8711, a Probiotic Bacterium Isolated from Yogurt. PMID:24072868
Complete Genome Sequence of Vibrio anguillarum M3, a Serotype O1 Strain Isolated from Japanese Flounder in China. PMID:24072867
Draft Genome Sequence of Bacillus subtilis Strain S1-4, Which Degrades Feathers Efficiently. PMID:24072866
Whole-Genome Shotgun Sequencing of Rhodococcus erythropolis Strain P27, a Highly Radiation-Resistant Actinomycete from Antarctica. PMID:24072865
Complete Genome Sequence of the Probiotic Strain Lactobacillus casei (Formerly Lactobacillus paracasei) LOCK919. PMID:24072862
First Whole-Genome Sequence of Mycobacterium iranicum, a Newly Reported Mycobacterial Species. PMID:24072861
Draft Genome Sequence of Vancomycin-Heteroresistant Staphylococcus epidermidis Strain UC7032, Isolated from Food. PMID:24072859
Whole-Genome Sequences of Staphylococcus aureus ST398 Strains of Animal Origin. PMID:24072856
Comparative genome analysis of Enterobacter cloacae. PMID:24069314
Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1. PMID:24065962
Genomic analysis of HAdV-B14 isolate from the outbreak of febrile respiratory infection in China. PMID:24055951
Draft Genome Sequence of Sphingobium lactosutens Strain DS20T, Isolated from a Hexachlorocyclohexane Dumpsite. PMID:24051323
Draft Genome Sequence of a Hexachlorocyclohexane-Degrading Bacterium, Sphingobium baderi Strain LL03T. PMID:24051322
Draft Genome Sequence of Sphingobium sp. Strain HDIPO4, an Avid Degrader of Hexachlorocyclohexane. PMID:24051321
Semi-automated curation of metabolic models via flux balance analysis: a case study with Mycoplasma gallisepticum. PMID:24039564
Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences. PMID:24036533
Complete genome sequence and phenotype microarray analysis of Cronobacter sakazakii SP291: a persistent isolate cultured from a powdered infant formula production facility. PMID:24032028
Draft Genome Sequence of Sphingobium quisquiliarum Strain P25T, a Novel Hexachlorocyclohexane (HCH)-Degrading Bacterium Isolated from an HCH Dumpsite. PMID:24029763
Genome Sequence of Novosphingobium lindaniclasticum LE124T, Isolated from a Hexachlorocyclohexane Dumpsite. PMID:24029761
Draft Genome Sequence of Ammonia-Producing Aeromonas sp. MDS8 Strain MCC2167 from Sludge of a Dairy Effluent Treatment Plant. PMID:24029759
Complete Genome Sequence of Staphylococcus aureus Tager 104, a Sequence Type 49 Ancestor. PMID:24029757
Genome Sequence of the Melanin-Producing Extremophile Aeromonas salmonicida subsp. pectinolytica Strain 34melT. PMID:24029754
Genomic investigation into strain heterogeneity and pathogenic potential of the emerging gastrointestinal pathogen Campylobacter ureolyticus. PMID:24023611
Draft Genome Sequences of Helicobacter pylori Strains HPARG63 and HPARG8G, Cultured from Patients with Chronic Gastritis and Gastric Ulcer Disease. PMID:24009126
Draft Genome Sequence of Pseudomonas pelagia CL-AP6, a Psychrotolerant Bacterium Isolated from Culture of Antarctic Green Alga Pyramimonas gelidicola. PMID:24009125
Draft Whole-Genome Sequence of VIM-1-Producing Multidrug-Resistant Enterobacter cloacae EC_38VIM1. PMID:24009122
Genome Sequence of Salt-Tolerant Bacillus safensis Strain VK, Isolated from Saline Desert Area of Gujarat, India. PMID:24009116
Draft Genome Sequence of Alicyclobacillus acidoterrestris Strain ATCC 49025. PMID:24009113
Complete Genome Sequence of the Broad-Host-Range Paenibacillus larvae Phage phiIBB_Pl23. PMID:24009112
Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era. PMID:24007365
Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts. PMID:23995941
The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides. PMID:23995932
Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm(T) (= DSM 23852(T)). PMID:23991257
Non-contiguous finished genome sequence and description of Salmonella enterica subsp. houtenae str. RKS3027. PMID:23991252
Whole-Genome Sequence of the Ancestral Animal-Borne ST398 Staphylococcus aureus Strain S123. PMID:23990588
Whole-Genome Sequences of Two Staphylococcus aureus ST398 Strains of Human Origin, S94 and S100. PMID:23990587
Draft Genome Sequence of the Human-Pathogenic Bacterium Vibrio alginolyticus E0666. PMID:23990586
Draft Genome Sequence of Sphingobium chinhatense Strain IP26T, Isolated from a Hexachlorocyclohexane Dumpsite. PMID:23990581
Draft Genome Sequence of Mycobacterium massiliense Strain M159, Showing Phenotypic Resistance to β-Lactam and Tetracycline Antibiotics. PMID:23990576
Comparative genomics of Campylobacter concisus isolates reveals genetic diversity and provides insights into disease association. PMID:23984967
In vivo emergence of colistin resistance in Klebsiella pneumoniae producing KPC-type carbapenemases mediated by insertional inactivation of the PhoQ/PhoP mgrB regulator. PMID:23979739
SHARP: genome-scale identification of gene-protein-reaction associations in cyanobacteria. PMID:23975204
Genome Sequence of the Quorum-Quenching Agrobacterium tumefaciens Strain WRT31. PMID:23969055
Draft Genome Sequence of the Fast-Growing Bacterium Vibrio natriegens Strain DSMZ 759. PMID:23969053
Genome Sequence of Salmonella bongori Strain N268-08 [corrected]. PMID:23969046
Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi. PMID:23966099
Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives. PMID:23957912
Identification and characterization of three novel lipases belonging to families II and V from Anaerovibrio lipolyticus 5ST. PMID:23950883
Draft Genome Sequence of Cyclobacterium qasimii Strain M12-11BT, Isolated from Arctic Marine Sediment. PMID:23950138
Genome Sequence of the Probiotic Strain Lactobacillus rhamnosus (Formerly Lactobacillus casei) LOCK900. PMID:23950137
Draft Genome Sequence of Leifsonia rubra Strain CMS 76RT, Isolated from a Cyanobacterial Mat Sample from a Pond in Wright Valley, McMurdo, Antarctica. PMID:23950134
Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Manhattan Strain 111113, from an Outbreak of Human Infections in Northern Italy. PMID:23950133
Draft Genome Sequence of Winogradskyella psychrotolerans RS-3T, Isolated from the Marine Transect of Kongsfjorden, Ny-Alesund, Svalbard, Arctic Ocean. PMID:23950132
Genome Sequence of the Autotrophic Acetogen Clostridium autoethanogenum JA1-1 Strain DSM 10061, a Producer of Ethanol from Carbon Monoxide. PMID:23950130
Draft Genome Sequence of Lactobacillus rhamnosus CRL1505, an Immunobiotic Strain Used in Social Food Programs in Argentina. PMID:23950129
Genome Sequence of Lysinibacillus sphaericus Strain KCTC 3346T. PMID:23950128
Genome Sequence of a Novel Polymer-Grade L-Lactate-Producing Alkaliphile, Exiguobacterium sp. Strain 8-11-1. PMID:23950124
Draft Genome Sequence of Clostridium tyrobutyricum Strain UC7086, Isolated from Grana Padano Cheese with Late-Blowing Defect. PMID:23950123
High-Quality Draft Genome Sequence of Pseudomonas syringae pv. Syringae Strain SM, Isolated from Wheat. PMID:23950121
Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592. PMID:23950115
Draft Genome Sequence of Klebsiella pneumoniae Isolate PR04. PMID:23950113
Genome Sequence of the Cheese-Starter Strain Lactobacillus delbrueckii subsp. lactis CRL 581. PMID:23929489
Genome Sequence of the 2,4,5-Trichlorophenoxyacetate-Degrading Bacterium Burkholderia phenoliruptrix Strain AC1100. PMID:23929488
The Draft Genome Sequence of Sphingomonas paucimobilis Strain HER1398 (Proteobacteria), Host to the Giant PAU Phage, Indicates That It Is a Member of the Genus Sphingobacterium (Bacteroidetes). PMID:23929486
Draft Genome Sequence of Exiguobacterium pavilionensis Strain RW-2, with Wide Thermal, Salinity, and pH Tolerance, Isolated from Modern Freshwater Microbialites. PMID:23929485
Draft Genome Sequence of the Fast-Growing Marine Bacterium Vibrio natriegens Strain ATCC 14048. PMID:23929482
Draft Genome Sequence of Strain SA_ST125_MupR of Methicillin-Resistant Staphylococcus aureus ST125, a Major Clone in Spain. PMID:23929481
Genome Sequence of Klebsiella pneumoniae Strain ATCC 25955, an Oxygen-Insensitive Producer of 1,3-Propanediol. PMID:23929480
Draft Genome Sequence of Pseudomonas plecoglossicida Strain NB2011, the Causative Agent of White Nodules in Large Yellow Croaker (Larimichthys crocea). PMID:23929479
Genome Sequence of Staphylococcus massiliensis Strain S46, Isolated from the Surface of Healthy Human Skin. PMID:23929469
Whole-Genome Sequence of Fish-Pathogenic Mycobacterium sp. Strain 012931, Isolated from Yellowtail (Seriola quinqueradiata). PMID:23929466
Draft Genome Sequence of Helicobacter fennelliae Strain MRY12-0050, Isolated from a Bacteremia Patient. PMID:23929465
Draft Genome Sequence of Euryhalocaulis caribicus Strain JL2009T, a New Member of the Family Hyphomonadaceae Isolated from the Caribbean Sea. PMID:23929464
Context-dependent competition in a model gut bacterial community. PMID:23922635
Structure and evolution of chlorate reduction composite transposons. PMID:23919996
Small, smaller, smallest: the origins and evolution of ancient dual symbioses in a Phloem-feeding insect. PMID:23918810
Genome Sequence of Clostridium butyricum Strain DSM 10702, a Promising Producer of Biofuels and Biochemicals. PMID:23908293
Draft Genome Sequence of Pseudomonas putida Strain MTCC5279. PMID:23908291
Draft Genome Sequence of the Bisphenol A-Degrading Bacterium Sphingobium sp. Strain YL23. PMID:23908290
Draft Genome Sequence of the Brazilian Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa Strain SPC777. PMID:23908289
Genome Sequences of Amycolatopsis orientalis subsp. orientalis Strains DSM 43388 and DSM 46075. PMID:23908288
Genome Sequence of Clostridium diolis Strain DSM 15410, a Promising Natural Producer of 1,3-Propanediol. PMID:23908285
Draft Genome Sequence of a Clinical Isolate of Multidrug-Resistant Mycobacterium tuberculosis East African Indian Strain OSDD271. PMID:23908284
Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1. PMID:23908279
Complete nucleotide sequence of a blaKPC-harboring IncI2 plasmid and its dissemination in New Jersey and New York hospitals. PMID:23896467
Evidence of a new metabolic capacity in an emerging diarrheal pathogen: lessons from the draft genomes of Vibrio fluvialis strains PG41 and I21563. PMID:23895343
Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity. PMID:23894338
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes. PMID:23894309
Genome Sequence of Thermus thermophilus ATCC 33923, a Thermostable Trehalose-Producing Strain. PMID:23887916
Complete Genome Sequence of the Carbazole Degrader Pseudomonas resinovorans Strain CA10 (NBRC 106553). PMID:23887915
Draft Genome Sequences of Porphyromonas crevioricanis JCM 15906T and Porphyromonas cansulci JCM 13913T Isolated from a Canine Oral Cavity. PMID:23887912
Draft Genome Sequence of the Polyextremophilic Exiguobacterium sp. Strain S17, Isolated from Hyperarsenic Lakes in the Argentinian Puna. PMID:23887911
Draft Genome Sequence of Pseudomonas fluorescens LMG 5329, a White Line-Inducing Principle-Producing Bioindicator for the Mushroom Pathogen Pseudomonas tolaasii. PMID:23887909
Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal. PMID:23887171
Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline. PMID:23882027
Genome Sequences of Two Pathogenic Streptococcus agalactiae Isolates from the One-Humped Camel Camelus dromedarius. PMID:23868134
Draft Genome Sequence of Enterococcus faecium Strain CRL 1879, Isolated from a Northwestern Argentinian Artisanal Cheese. PMID:23868133
Draft Genome Sequence of Indibacter alkaliphilus Strain LW1T, Isolated from Lonar Lake, a Haloalkaline Lake in the Buldana District of Maharashtra, India. PMID:23868132
Genome Sequences of Multidrug-Resistant Acinetobacter baumannii Strains from Nosocomial Outbreaks in Japan. PMID:23868126
Draft Genome Sequence of the Hydrogen- and Ethanol-Producing Anaerobic Alkalithermophilic Bacterium Caloramator celer. PMID:23868125
Draft Genome Sequence of Agarivorans albus Strain MKT 106T, an Agarolytic Marine Bacterium. PMID:23868120
Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates. PMID:23865594
Genomic characterization provides new insight into Salmonella phage diversity. PMID:23865498
Draft Genome Sequence of Arcticibacter svalbardensis Strain MN12-7T, a Member of the Family Sphingobacteriaceae Isolated from an Arctic Soil Sample. PMID:23846277
Draft Genome Sequence of a Highly Flagellated, Fast-Swimming Archaeon, Methanocaldococcus villosus Strain KIN24-T80 (DSM 22612). PMID:23846275
Genome Sequence of Lactobacillus sakei subsp. sakei LS25, a Commercial Starter Culture Strain for Fermented Sausage. PMID:23846274
Genome Sequences of Four Yersinia enterocolitica Bioserotype 4/O:3 Isolates from Mammals. PMID:23846271
Genome Sequence of Streptococcus agalactiae Strain 09mas018883, Isolated from a Swedish Cow. PMID:23846269
Genome Sequence of "Candidatus Methanomassiliicoccus intestinalis" Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces. PMID:23846268
Draft Genome Sequences of Elizabethkingia meningoseptica. PMID:23846266
Comparative Genomic Analyses of Streptococcus pseudopneumoniae Provide Insight into Virulence and Commensalism Dynamics. PMID:23840352
H-NS is a negative regulator of the two hemolysin/cytotoxin gene clusters in Vibrio anguillarum. PMID:23836825
Role of energy sensor TlpD of Helicobacter pylori in gerbil colonization and genome analyses after adaptation in the gerbil. PMID:23836820
Complete sequence of pSAM7, an IncX4 plasmid carrying a novel blaCTX-M-14b transposition unit isolated from Escherichia coli and Enterobacter cloacae from cattle. PMID:23836183
Draft Genome Sequence of Arthrobacter crystallopoietes Strain BAB-32, Revealing Genes for Bioremediation. PMID:23833141
Complete Genome Sequence of Mycobacterium massiliense Clinical Strain Asan 50594, Belonging to the Type II Genotype. PMID:23833135
Draft Genome Sequence of Multidrug-Resistant Pseudomonas aeruginosa Strain VRFPA02, Isolated from a Septicemic Patient in India. PMID:23833134
Draft Genome Sequence of Salinibacillus aidingensis Strain MSP4, an Obligate Halophilic Bacterium Isolated from a Salt Crystallizer of the Rann of Kutch, India. PMID:23833129
Multifactorial diversity sustains microbial community stability. PMID:23823494
Draft genome sequences of five recent human uropathogenic Escherichia coli isolates. PMID:23821517
Comparative genome analysis of Lactobacillus casei strains isolated from Actimel and Yakult products reveals marked similarities and points to a common origin. PMID:23815335
Draft Genome Sequence of Ammonia-Producing Acinetobacter sp. Strain MCC2139 from Dairy Effluent. PMID:23814111
Genome Sequence of Plesiomonas shigelloides Strain 302-73 (Serotype O1). PMID:23814109
First draft genome sequence from a member of the genus agrococcus, isolated from modern microbialites. PMID:23814108
Genome Sequence of the Vancomycin-Producing Amycolatopsis orientalis subsp. orientalis Strain KCTC 9412T. PMID:23814036
MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information. PMID:23800136
Genome Sequence of Proteus mirabilis Strain PR03, Isolated from a Local Hospital in Malaysia. PMID:23792750
Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria). PMID:23792744
Draft Genome Sequence of a Clinical Isolate of Mycobacterium tuberculosis Strain PR05. PMID:23788553
Draft Genome of a Type 4 Pilus Defective Myxococcus xanthus Strain, DZF1. PMID:23788552
Draft Genome Sequence of the Antarctic Psychrophilic Bacterium Pseudomonas syringae Strain Lz4W. PMID:23788547
Complete Genome Sequence of Probiotic Strain Lactobacillus acidophilus La-14. PMID:23788546
Genome Sequence of the Pectobacterium atrosepticum Strain CFBP6276, Causing Blackleg and Soft Rot Diseases on Potato Plants and Tubers. PMID:23788545
Genome Sequence of Methicillin-Resistant Staphylococcus pseudintermedius Sequence Type 233 (ST233) Strain K7, of Human Origin. PMID:23788539
Draft Genome Sequence of Vibrio parahaemolyticus V110, Isolated from Shrimp in Hong Kong. PMID:23788537
Draft Genome Sequence of Bacillus atrophaeus UCMB-5137, a Plant Growth-Promoting Rhizobacterium. PMID:23788535
Draft Genome Sequence of Streptococcus agalactiae PR06. PMID:23766409
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum. PMID:23754396
Adaptability and persistence of the emerging pathogen Bordetella petrii. PMID:23750235
Genome implosion elicits host-confinement in Alcaligenaceae: evidence from the comparative genomics of Tetrathiobacter kashmirensis, a pathogen in the making. PMID:23741407
Metagenomic insights into anaerobic metabolism along an Arctic peat soil profile. PMID:23741360
Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data. PMID:23737977
Molecular Characterization of an Atypical IncX3 Plasmid pKPC-NY79 Carrying bla KPC-2 in a Klebsiella pneumoniae. PMID:23728748
Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK. PMID:23725633
A semi-automated genome annotation comparison and integration scheme. PMID:23725374
Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation. PMID:23724777
Genome of the Psychrophilic Bacterium Bacillus psychrosaccharolyticus, a Potential Source of 2'-Deoxyribosyltransferase for Industrial Nucleoside Synthesis. PMID:23723405
Genome Sequence of Clostridium tyrobutyricum ATCC 25755, a Butyric Acid-Overproducing Strain. PMID:23723404
Draft Genome Sequence of Agrobacterium sp. Strain UHFBA-218, Isolated from Rhizosphere Soil of Crown Gall-Infected Cherry Rootstock Colt. PMID:23723402
Draft Genome Sequences of Two Multidrug-Resistant Acinetobacter baumannii Strains of Sequence Type ST92 and ST96. PMID:23723398
Two multidrug-resistant clinical isolates of Bacteroides fragilis carry a novel metronidazole resistance nim gene (nimJ). PMID:23716049
Complete sequence of pOZ176, a 500-kilobase IncP-2 plasmid encoding IMP-9-mediated carbapenem resistance, from outbreak isolate Pseudomonas aeruginosa 96. PMID:23716048
The genome sequence of Streptomyces lividans 66 reveals a novel tRNA-dependent peptide biosynthetic system within a metal-related genomic island. PMID:23709624
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. PMID:23707974
Genome analysis of Staphylococcus aureus ST291, a double locus variant of ST398, reveals a distinct genetic lineage. PMID:23704886
Complete Genome of a Methanosarcina mazei Strain Isolated from Sediment Samples from an Amazonian Flooded Area. PMID:23704185
Genome Sequence of Xanthomonas arboricola pv. Corylina, Isolated from Turkish Filbert in Colorado. PMID:23704178
Draft Genome Sequence of Pseudomonas veronii Strain 1YdBTEX2. PMID:23682152
Genome Sequences of Two Morphologically Distinct and Thermophilic Bacillus coagulans Strains, H-1 and XZL9. PMID:23682151
Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria). PMID:23682147
Draft Genome Sequence of the Steroid Degrader Rhodococcus ruber Strain Chol-4. PMID:23682139
Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon prediction. PMID:23675487
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage. PMID:23673639
Draft Genome Sequence of Strain JLT2015T, Belonging to the Family Sphingomonadaceae of the Alphaproteobacteria. PMID:23661488
Draft Genome Sequence of Myxococcus xanthus Wild-Type Strain DZ2, a Model Organism for Predation and Development. PMID:23661486
Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi. PMID:23661482
Draft Genome Sequence of Methylophaga lonarensis MPLT, a Haloalkaliphilic (Non-Methane-Utilizing) Methylotroph. PMID:23661481
Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria). PMID:23661480
Draft Genome Sequence of Lactobacillus pobuzihii E100301T. PMID:23661478
Genome Sequence of Klebsiella pneumoniae HSL4, a New Strain Isolated from Mangrove Sediment for Biosynthesis of 1,3-Propanediol. PMID:23661476
Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria). PMID:23661474
Genome Sequencing of Ralstonia solanacearum FQY_4, Isolated from a Bacterial Wilt Nursery Used for Breeding Crop Resistance. PMID:23661471
MabsBase: a Mycobacterium abscessus genome and annotation database. PMID:23658631
Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards. PMID:23653265
Fast induction of biosynthetic polysaccharide genes lpxA, lpxE, and rkpI of Rhizobium sp. strain PRF 81 by common bean seed exudates is indicative of a key role in symbiosis. PMID:23652766
The comprehensive antibiotic resistance database. PMID:23650175
Phenotypic and genotypic properties of Microbacterium yannicii, a recently described multidrug resistant bacterium isolated from a lung transplanted patient with cystic fibrosis in France. PMID:23642186
Genome Sequence of Stenotrophomonas maltophilia Strain AU12-09, Isolated from an Intravascular Catheter. PMID:23640378
Complete Genome Sequence of the Probiotic Bifidobacterium thermophilum Strain RBL67. PMID:23640377
Whole-Genome Sequences of Streptococcus tigurinus Type Strain AZ_3a and S. tigurinus 1366, a Strain Causing Prosthetic Joint Infection. PMID:23640198
Genome Sequence of Halanaerobium saccharolyticum subsp. saccharolyticum Strain DSM 6643T, a Halophilic Hydrogen-Producing Bacterium. PMID:23640197
Identification of genes and pathways related to phenol degradation in metagenomic libraries from petroleum refinery wastewater. PMID:23637911
Clostridium botulinum strain Af84 contains three neurotoxin gene clusters: bont/A2, bont/F4 and bont/F5. PMID:23637798
The genome organization of Thermotoga maritima reflects its lifestyle. PMID:23637642
Explaining microbial phenotypes on a genomic scale: GWAS for microbes. PMID:23625995
Bordetella holmesii: initial genomic analysis of an emerging opportunist. PMID:23620158
High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute to Xanthomonas phytopathogenesis. PMID:23617851
Genomic deletions disrupt nitrogen metabolism pathways of a cyanobacterial diatom symbiont. PMID:23612308
Characterization of Aeromonas hydrophila wound pathotypes by comparative genomic and functional analyses of virulence genes. PMID:23611906
Isolation and characterization of Staphylococcus aureus strains from a Paso del Norte dairy. PMID:23608491
Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park. PMID:23607440
Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas. PMID:23607266
Mobile elements in a single-filament orange Guaymas Basin Beggiatoa ("Candidatus Maribeggiatoa") sp. draft genome: evidence for genetic exchange with cyanobacteria. PMID:23603674
Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011. PMID:23599422
Draft Genome Sequence of Stenotrophomonas maltophilia Strain EPM1, Found in Association with a Culture of the Human Parasite Giardia duodenalis. PMID:23599297
Draft Genome Sequence of Ochrobactrum pseudogrignonense Strain CDB2, a Highly Efficient Arsenate-Resistant Soil Bacterium from Arsenic-Contaminated Cattle Dip Sites. PMID:23599296
Draft Genome Sequences of Two Bulgarian Bacillus anthracis Strains. PMID:23599294
Draft Genome Sequence of Streptomyces gancidicus Strain BKS 13-15. PMID:23599292
Genome Sequence of the Pathogenic Bacterium Vibrio vulnificus Biotype 3. PMID:23599289
Genomic and enzymatic results show Bacillus cellulosilyticus uses a novel set of LPXTA carbohydrases to hydrolyze polysaccharides. PMID:23593409
A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences. PMID:23585714
Draft Genome Sequence of VIM-2-Producing Multidrug-Resistant Pseudomonas aeruginosa ST175, an Epidemic High-Risk Clone. PMID:23580706
Multivariate analysis of functional metagenomes. PMID:23579547
Genome-level homology and phylogeny of Vibrionaceae (Gammaproteobacteria: Vibrionales) with three new complete genome sequences. PMID:23578061
Beginner's guide to comparative bacterial genome analysis using next-generation sequence data. PMID:23575213
The detection and sequencing of a broad-host-range conjugative IncP-1β plasmid in an epidemic strain of Mycobacterium abscessus subsp. bolletii. PMID:23565273
Draft Genome Sequence of the Rice Endophyte Burkholderia kururiensis M130. PMID:23558537
Draft Genome Sequence of Rhodococcus ruber Strain BKS 20-38. PMID:23558535
Draft Genome Sequence of Amycolatopsis decaplanina Strain DSM 44594T. PMID:23558534
Draft Genome Sequence of Acinetobacter baumannii Strain MSP4-16. PMID:23558533
Draft genome of Ochrobactrum intermedium strain M86 isolated from non-ulcer dyspeptic individual from India. PMID:23557353
Insights into the physiology and ecology of the brackish-water-adapted Cyanobacterium Nodularia spumigena CCY9414 based on a genome-transcriptome analysis. PMID:23555932
Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity. PMID:23555659
Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PMID:23555547
Genomic comparison between Salmonella Gallinarum and Pullorum: differential pseudogene formation under common host restriction. PMID:23555032
Mealybugs nested endosymbiosis: going into the 'matryoshka' system in Planococcus citri in depth. PMID:23548081
Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools. PMID:23547799
Comparative genomic analysis of rapid evolution of an extreme-drug-resistant Acinetobacter baumannii clone. PMID:23538992
Draft Genome Sequence of Rhodococcus triatomae Strain BKS 15-14. PMID:23538907
Draft Genome Sequence of Rhodococcus qingshengii Strain BKS 20-40. PMID:23538906
Adaptation and modification of three CRISPR loci in two closely related cyanobacteria. PMID:23535141
Streptococcal collagen-like protein A and general stress protein 24 are immunomodulating virulence factors of group A Streptococcus. PMID:23531597
Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman. PMID:23527145
The complete genome and phenome of a community-acquired Acinetobacter baumannii. PMID:23527001
Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment. PMID:23521820
Metagenomic insights into the dominant Fe(II) oxidizing Zetaproteobacteria from an iron mat at Lō´ihi, Hawai´l. PMID:23518919
Genome Sequence of Staphylococcus pseudintermedius Strain E140, an ST71 European-Associated Methicillin-Resistant Isolate. PMID:23516230
Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria). PMID:23516225
Complete genome sequence of Bacillus thuringiensis subsp. thuringiensis strain IS5056, an isolate highly toxic to Trichoplusia ni. PMID:23516221
Complete genome sequence of Myxococcus stipitatus strain DSM 14675, a fruiting myxobacterium. PMID:23516218
Draft genome sequence of an Actinobacterium, Brachybacterium muris strain UCD-AY4. PMID:23516213
Draft Genome Sequence of Vibrio mimicus Strain CAIM 602T. PMID:23516211
Whole-Genome Sequencing of Micrococcus luteus Strain Modasa, of Indian Origin. PMID:23516205
Whole-genome sequence of a freshwater aerobic anoxygenic phototroph, Porphyrobacter sp. strain AAP82, isolated from the Huguangyan Maar Lake in Southern China. PMID:23516203
Whole-Genome Sequences of an Aerobic Anoxygenic Phototroph, Blastomonas sp. Strain AAP53, Isolated from a Freshwater Desert Lake in Inner Mongolia, China. PMID:23516202
Genome Sequence of the Butanol Hyperproducer Clostridium saccharoperbutylacetonicum N1-4. PMID:23516201
Draft Genome Sequence of the 2-Chloro-4-Nitrophenol-Degrading Bacterium Arthrobacter sp. Strain SJCon. PMID:23516196
Draft Genome Sequence of Escherichia coli Strain ATCC 23506 (Serovar O10:K5:H4). PMID:23516192
Draft Genome Sequence of Pseudoalteromonas luteoviolacea Strain B (ATCC 29581). PMID:23516191
Draft Genome Sequence of Escherichia coli Strain Nissle 1917 (Serovar O6:K5:H1). PMID:23516190
Draft Genome Sequence of Escherichia coli Strain ATCC 23502 (Serovar O5:K4:H4). PMID:23516189
Complete Genome Sequence of Escherichia Phage ADB-2 Isolated from a Fecal Sample of Poultry. PMID:23516186
Genome Sequence of Vibrio cholerae G4222, a South African Clinical Isolate. PMID:23516184
Draft genome sequence of the chronic, nonclonal cystic fibrosis isolate Pseudomonas aeruginosa strain 18A. PMID:23516177
Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome. PMID:23493677
Deletion of integron-associated gene cassettes impact on the surface properties of Vibrio rotiferianus DAT722. PMID:23484028
Organic cofactors in the metabolism of Dehalococcoides mccartyi strains. PMID:23479751
Bacterial DNA sifted from the Trichoplax adhaerens (Animalia: Placozoa) genome project reveals a putative rickettsial endosymbiont. PMID:23475938
Draft Genome Sequence of the Phyllosphere Model Bacterium Pantoea agglomerans 299R. PMID:23472227
Draft Genome Sequence of Brevibacillus sp. Strain BAB-2500, a Strain That Might Play an Important Role in Agriculture. PMID:23472223
Draft Genome Sequence of a Nitrate- and Phosphate-Removing Bacillus sp., WBUNB009. PMID:23469363
Draft Genome Sequence of Herbaspirillum huttiense subsp. putei IAM 15032, a Strain Isolated from Well Water. PMID:23469362
Draft Genome Sequence of a Phosphate-Accumulating Bacillus sp., WBUNB004. PMID:23469361
Whole-Genome Sequencing and Comparative Analysis of Yersinia pestis, the Causative Agent of a Plague Outbreak in Northern Peru. PMID:23469360
Genome Sequence of Alcaligenes sp. Strain HPC1271. PMID:23469352
Genome Sequence of Naphthalene-Degrading Soil Bacterium Pseudomonas putida CSV86. PMID:23469351
Draft Genome Sequence of the Halophilic Bacterium Halobacillus sp. Strain BAB-2008. PMID:23469348
Draft Genome Sequence of a Clinical Strain of Yersinia enterocolitica (IP10393) of Bioserotype 4/O:3 from France. PMID:23469338
Draft Genome Sequence of Chromate-Resistant and Biofilm-Producing Strain Pseudomonas alcaliphila 34. PMID:23469336
Genome Sequences and Photosynthesis Gene Cluster Composition of a Freshwater Aerobic Anoxygenic Phototroph, Sandarakinorhabdus sp. Strain AAP62, Isolated from the Shahu Lake in Ningxia, China. PMID:23469335
Genome sequence of Methanobrevibacter sp. strain jh1, isolated from rumen of Korean native cattle. PMID:23469331
Evolutionary Genomics of Salmonella enterica Subspecies. PMID:23462113
A Rex family transcriptional repressor influences H2O2 accumulation by Enterococcus faecalis. PMID:23417491
Genetic analysis of capsular polysaccharide synthesis gene clusters from all serotypes of Streptococcus suis: potential mechanisms for generation of capsular variation. PMID:23416996
Type 1 and type 2 strains of Mycoplasma pneumoniae form different biofilms. PMID:23412845
Draft Genome Sequence of a Humic Substance-Degrading Paenibacillus sp. Isolated from the Subarctic Grasslands at Low Temperature. PMID:23409270
Draft Genome Sequence of Rhodococcus opacus Strain M213 Shows a Diverse Catabolic Potential. PMID:23409266
Draft Genome Sequence of the Nitrate- and Phosphate-Accumulating Bacillus sp. Strain MCC0008. PMID:23409265
Genome Sequence of Non-O1 Vibrio cholerae PS15. PMID:23409261
Draft Genome Sequence of an Alphaproteobacterium, Caenispirillum salinarum AK4(T), Isolated from a Solar Saltern. PMID:23409257
Whole Genome Sequencing and Comparative Analysis of Bartonella bacilliformis Strain INS, the Causative Agent of Carrion's Disease. PMID:23409255
Genome Sequence of Campylobacter showae UNSWCD, Isolated from a Patient with Crohn's Disease. PMID:23409253
Complete genome sequence of Liberibacter crescens BT-1. PMID:23408754
Complete genome sequence of bacteriophage VvAW1, which infects Vibrio vulnificus. PMID:23408718
Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park. PMID:23408395
Draft Genome Sequences of Two Clinical Isolates of Lactobacillus rhamnosus from Initial Stages of Dental Pulp Infection. PMID:23405363
Draft Genome Sequence of the Paenibacillus sp. Strain ICGEB2008 (MTCC 5639) Isolated from the Gut of Helicoverpa armigera. PMID:23405362
Draft genome sequences of five strains in the genus thauera. PMID:23405361
Draft Genome Sequence of Fructophilic Lactobacillus florum. PMID:23405360
Whole-Genome Shotgun Sequence of Pseudomonas viridiflava, a Bacterium Species Pathogenic to Ararabidopsis thaliana. PMID:23405356
Draft Genome Sequences of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8, Soil Bacteria That Cooperate To Degrade the Poly-γ-d-Glutamic Acid Anthrax Capsule. PMID:23405351
Draft genome sequence of a subarctic humic substance-degrading pseudomonad. PMID:23405349
Draft Genome Sequences of Two Multidrug Resistant Klebsiella pneumoniae ST258 Isolates Resistant to Colistin. PMID:23405348
Complete Genome Sequence of the Probiotic Enterococcus faecalis Symbioflor 1 Clone DSM 16431. PMID:23405346
Complete Genome Sequence of a Francisella tularensis subsp. holarctica Strain from Germany Causing Lethal Infection in Common Marmosets. PMID:23405342
Whole-Genome Shotgun Sequencing of Mycobacterium abscessus M156, an Emerging Clinical Pathogen in Malaysia. PMID:23405341
Draft Genome Sequences of Two Virulent Serotypes of Avian Pasteurella multocida. PMID:23405337
Draft Genome Sequence of the Opportunistic Human Pathogen Morganella morganii SC01. PMID:23405333
Draft Genome Sequence of Catellicoccus marimammalium, a Novel Species Commonly Found in Gull Feces. PMID:23405330
Genome Sequence of Helicobacter heilmannii Sensu Stricto ASB1 Isolated from the Gastric Mucosa of a Kitten with Severe Gastritis. PMID:23405321
Genome Sequences of Two Lactococcus garvieae Strains Isolated from Meat. PMID:23405320
Genome Sequence of Sphingomonas xenophaga QYY, an Anthraquinone-Degrading Strain. PMID:23405319
Draft Genome of Klebsiella pneumoniae Sequence Type 512, a Multidrug-Resistant Strain Isolated during a Recent KPC Outbreak in Italy. PMID:23405316
Draft Genome Sequence of Brucella abortus BCB027, a Strain Isolated from a Domestic Deer. PMID:23405292
Genome Sequence of Lactobacillus saerimneri 30a (Formerly Lactobacillus sp. Strain 30a), a Reference Lactic Acid Bacterium Strain Producing Biogenic Amines. PMID:23405290
Draft Genome Sequence of the Type Species of the Genus Citrobacter, Citrobacter freundii MTCC 1658. PMID:23405287
Exploring the diversity of Arcobacter butzleri from cattle in the UK using MLST and whole genome sequencing. PMID:23405126
Bacterial growth at -15 °C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1. PMID:23389107
Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche. PMID:23384204
The genome sequences of Cellulomonas fimi and "Cellvibrio gilvus" reveal the cellulolytic strategies of two facultative anaerobes, transfer of "Cellvibrio gilvus" to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov. PMID:23342046
RubisCO gene clusters found in a metagenome microarray from acid mine drainage. PMID:23335778
Database resources for the tuberculosis community. PMID:23332401
Decoding in Candidatus Riesia pediculicola, close to a minimal tRNA modification set? PMID:23308034
Applying Shannon's information theory to bacterial and phage genomes and metagenomes. PMID:23301154
Complete sequence of a bla(KPC-2)-harboring IncFII(K1) plasmid from a Klebsiella pneumoniae sequence type 258 strain. PMID:23295924
Identification of accessory genome regions in poultry Clostridium perfringens isolates carrying the netB plasmid. PMID:23292780
Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress. PMID:23283017
Identification and characterization of a periplasmic trilactone esterase, Cee, revealed unique features of ferric enterobactin acquisition in Campylobacter. PMID:23278903
Bacteriophage cocktail significantly reduces Escherichia coli O157: H7 contamination of lettuce and beef, but does not protect against recontamination. PMID:23275869
Reannotation of translational start sites in the genome of Mycobacterium tuberculosis. PMID:23273318
Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.). PMID:23270491
Reconstitution of a thermostable xylan-degrading enzyme mixture from the bacterium Caldicellulosiruptor bescii. PMID:23263957
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. PMID:23242138
CINPER: an interactive web system for pathway prediction for prokaryotes. PMID:23236458
Why orange Guaymas Basin Beggiatoa spp. are orange: single-filament-genome-enabled identification of an abundant octaheme cytochrome with hydroxylamine oxidase, hydrazine oxidase, and nitrite reductase activities. PMID:23220958
Genome sequence of Afipia birgiae, a rare bacterium associated with Amoebae. PMID:23209256
Genome sequence of the immunomodulatory strain Bifidobacterium bifidum LMG 13195. PMID:23209243
Draft genome sequence of Agrobacterium albertimagni strain AOL15. PMID:23209236
Genome sequence of OXA-48 carbapenemase-producing Klebsiella pneumoniae KpO3210. PMID:23209233
Draft genome sequence of the bean-nodulating Sinorhizobium fredii strain GR64. PMID:23209231
Genome sequence of the bacteriocin-producing strain Lactococcus garvieae DCC43. PMID:23209230
Genome sequence of Moraxella catarrhalis RH4, an isolate of seroresistant lineage. PMID:23209224
Draft genome sequence of Methanobacterium formicicum DSM 3637, an Archaebacterium isolated from the methane producer amoeba Pelomyxa palustris. PMID:23209223
Genome sequence of Brucella melitensis strain 128, an isolate of biovar 3 of sequence type 8. PMID:23209219
Complete genome sequence of Brucella suis field strain BCB025 of sequence type ST22. PMID:23209218
Genome sequence of strain IMCC14465, isolated from the East Sea, belonging to the PS1 clade of Alphaproteobacteria. PMID:23209213
Genome sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens. PMID:23209209
Complete genome sequence of Brucella abortus strain BCB034, a strain of biovar 2 isolated from human. PMID:23209208
Draft genome sequence of the biocontrol bacterium Bacillus amyloliquefaciens strain M27. PMID:23209201
Genome sequence and comparative genomics analysis of a Vibrio cholerae O1 strain isolated from a cholera patient in Malaysia. PMID:23209200
Complete genome sequence of Brucella melitensis 133, an isolate of biovar 1 of sequence type 32. PMID:23209199
Draft genome sequence of Enterobacter cloacae subsp. cloacae strain 08XA1, a fecal bacterium of giant pandas. PMID:23209197
Genome sequences of Burkholderia sp. strains CCGE1002 and H160, isolated from legume nodules in Mexico and Brazil. PMID:23209196
BG7: a new approach for bacterial genome annotation designed for next generation sequencing data. PMID:23185310
Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations. PMID:23169633
Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome. PMID:23166822
Comparative analysis of genome sequences covering the seven cronobacter species. PMID:23166675
Complete genome sequence of IME11, a new N4-like bacteriophage. PMID:23166261
Complete genome sequence of IME15, the first T7-like bacteriophage lytic to pan-antibiotic-resistant Stenotrophomonas maltophilia. PMID:23166248
Quantifying homologous replacement of loci between haloarchaeal species. PMID:23160063
Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park. PMID:23151644
Comparative genomics of bacteria in the genus Providencia isolated from wild Drosophila melanogaster. PMID:23145767
Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity. PMID:23145189
Molecular evidence for the thriving of Campylobacter jejuni ST-4526 in Japan. PMID:23144873
Complete genome sequence of Brucella canis BCB018, a strain isolated from a human patient. PMID:23144429
Genome sequence of Stenotrophomonas maltophilia S028, an isolate harboring the AmpR-L2 resistance module. PMID:23144428
Draft genome sequence of high-melanin-yielding Aeromonas media strain WS. PMID:23144426
Genome sequence of multidrug-resistant Escherichia coli EC302/04, isolated from a human tracheal aspirate. PMID:23144425
Complete genome sequence of Actinobacillus suis H91-0380, a virulent serotype O2 strain. PMID:23144422
Draft genome sequence of the thermophilic bacterium Anoxybacillus kamchatkensis G10. PMID:23144421
Complete genome sequence of Brucella canis strain 118, a strain isolated from canine. PMID:23144418
Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant. PMID:23144412
Draft genome sequence of Bacillus pumilus BA06, a producer of alkaline serine protease with leather-dehairing function. PMID:23144411
Genome sequence of Mycobacterium abscessus strain M152. PMID:23144407
Complete genome sequence of Brucella abortus 134, a biovar 1 strain isolated from human. PMID:23144404
Draft genome sequence of Paenisporosarcina sp. strain TG-14, a psychrophilic bacterium isolated from sediment-laden stratified basal ice from Taylor Glacier, McMurdo Dry Valleys, Antarctica. PMID:23144403
Genome sequence of Rhizobium grahamii CCGE502, a broad-host-range symbiont with low nodulation competitiveness in Phaseolus vulgaris. PMID:23144400
Draft genome sequence of the antifungal-producing plant-benefiting bacterium Burkholderia pyrrocinia CH-67. PMID:23144399
Draft genome sequence of the novel enteric bacterium Galloisinimonas intestini B14T KCTC 32180, isolated from the gut of a Galloisiana species (Notoptera: Grylloblattidae) fossil insect. PMID:23144398
Draft genome sequence of the fish pathogen Vibrio harveyi strain ZJ0603. PMID:23144396
Genome sequence of Staphylococcus epidermidis strain AU12-03, isolated from an intravascular catheter. PMID:23144393
Genome sequence of Leuconostoc pseudomesenteroides strain 4882, isolated from a dairy starter culture. PMID:23144391
Draft genome sequence of Paenisporosarcina sp. strain TG-20, a psychrophilic bacterium isolated from the basal ice of Taylor Glacier. PMID:23144390
Genome sequence of Janibacter hoylei MTCC8307, isolated from the stratospheric air. PMID:23144385
Draft genome sequence of the methane-oxidizing bacterium Methylococcus capsulatus (Texas). PMID:23144383
Draft genome sequence of the cyanide-utilizing bacterium Pseudomonas fluorescens strain NCIMB 11764. PMID:23144379
Genome sequence of Staphylococcus arlettae strain CVD059, isolated from the blood of a cardiovascular disease patient. PMID:23144377
First genome sequence of a Burkholderia pseudomallei Isolate in China, strain BPC006, obtained from a melioidosis patient in Hainan. PMID:23144371
Sequence of closely related plasmids encoding bla(NDM-1) in two unrelated Klebsiella pneumoniae isolates in Singapore. PMID:23139815
Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2. PMID:23133618
Complete nucleotide sequences of blaKPC-4- and blaKPC-5-harboring IncN and IncX plasmids from Klebsiella pneumoniae strains isolated in New Jersey. PMID:23114770
Analysis of a unique Clostridium botulinum strain from the Southern hemisphere producing a novel type E botulinum neurotoxin subtype. PMID:23113872
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models. PMID:23110173
Genome sequence of Lactococcus raffinolactis strain 4877, isolated from natural dairy starter culture. PMID:23105090
Draft genome sequence of Rhodovulum sp. strain PH10, a phototrophic alphaproteobacterium isolated from a soil sample of mangrove of Namkhana, India. PMID:23105089
Genome sequence of Oscillibacter ruminantium strain GH1, isolated from rumen of Korean native cattle. PMID:23105088
Draft genome sequence of Bacillus anthracis BF-1, isolated from Bavarian cattle. PMID:23105087
Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees. PMID:23105086
Draft genome sequence of Achromobacter piechaudii strain HLE. PMID:23105084
Draft genome sequence of Bacillus oceanisediminis 2691. PMID:23105082
Complete genome sequence of Mycobacterium vaccae type strain ATCC 25954. PMID:23105074
Complete genome sequence of Mycobacterium fortuitum subsp. fortuitum type strain DSM46621. PMID:23105073
Draft genome sequence of Virgibacillus halodenitrificans 1806. PMID:23105070
Draft genome sequence of Pontibacter sp. nov. BAB1700, a halotolerant, industrially important bacterium. PMID:23105068
Complete genome sequence of Klebsiella pneumoniae 1084, a hypermucoviscosity-negative K1 clinical strain. PMID:23105059
Genome sequence of Nitratireductor aquibiodomus strain RA22. PMID:23105054
Draft genome sequence of Paenibacillus sp. strain OSY-SE, a bacterium producing the novel broad-spectrum lipopeptide antibiotic paenibacterin. PMID:23105053
Genome sequence of Pseudomonas aeruginosa DQ8, an efficient degrader of n-alkanes and polycyclic aromatic hydrocarbons. PMID:23105052
Genome sequences of two freshwater betaproteobacterial isolates, Limnohabitans species strains Rim28 and Rim47, indicate their capabilities as both photoautotrophs and ammonia oxidizers. PMID:23105051
Genome sequence of the psychrophilic deep-sea bacterium Moritella marina MP-1 (ATCC 15381). PMID:23105048
Genome sequence of the thermophile Bacillus coagulans Hammer, the type strain of the species. PMID:23105047
Genome sequence of Staphylococcus aureus Newbould 305, a strain associated with mild bovine mastitis. PMID:23105046
Redundancy and modularity in membrane-associated dissimilatory nitrate reduction in Bacillus. PMID:23087684
Complete genome sequence of the bacteriophages ECBP1 and ECBP2 isolated from two different Escherichia coli strains. PMID:23087106
Microbial virus genome annotation-mustering the troops to fight the sequence onslaught. PMID:23084289
Real-time sequencing to decipher the molecular mechanism of resistance of a clinical pan-drug-resistant Acinetobacter baumannii isolate from Marseille, France. PMID:23070160
Identification and characterization of a bile salt hydrolase from Lactobacillus salivarius for development of novel alternatives to antibiotic growth promoters. PMID:23064348
An indigoidine biosynthetic gene cluster from Streptomyces chromofuscus ATCC 49982 contains an unusual IndB homologue. PMID:23053349
Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens. PMID:23051057
The Caulobacter crescentus phage phiCbK: genomics of a canonical phage. PMID:23050599
Genome sequence of the plant growth-promoting rhizobacterium Pseudomonas putida S11. PMID:23045515
Genome sequences of three live attenuated vaccine strains of Brucella species and implications for pathogenesis and differential diagnosis. PMID:23045513
Draft genome sequence of the quality control strain Enterococcus faecalis ATCC 29212. PMID:23045510
Genomic analysis of Mycobacterium abscessus strain M139, which has an ambiguous subspecies taxonomic position. PMID:23045507
Genome sequence of an OXA23-producing, carbapenem-resistant Acinetobacter baumannii strain of sequence type ST75. PMID:23045506
Draft genome sequence of Bacillus anthracis UR-1, isolated from a German heroin user. PMID:23045504
Genome sequence of Kocuria atrinae C3-8, isolated from Jeotgal, a traditional Korean fermented seafood. PMID:23045503
Genome sequence of the welan gum-producing strain Sphingomonas sp. ATCC 31555. PMID:23045500
Genome sequence of Lysinibacillus boronitolerans F1182, isolated from a traditional Korean fermented soybean product. PMID:23045499
Genome sequence of Staphylococcus lentus F1142, a strain isolated from Korean soybean paste. PMID:23045498
Genome sequence of Pseudomonas putida S12, a potential platform strain for industrial production of valuable chemicals. PMID:23045497
Genomic comparison of Kingella kingae strains. PMID:23045489
Genome sequence and comparative pathogenomics analysis of a Salmonella enterica Serovar Typhi strain associated with a typhoid carrier in Malaysia. PMID:23045488
Complete genome sequence of the endophytic Enterobacter cloacae subsp. cloacae strain ENHKU01. PMID:23045485
Next-generation sequencing and de novo assembly, genome organization, and comparative genomic analyses of the genomes of two Helicobacter pylori isolates from duodenal ulcer patients in India. PMID:23045484
Draft genome sequence of Staphylococcus vitulinus F1028, a strain isolated from a block of fermented soybean. PMID:23045483
MESSA: MEta-Server for protein Sequence Analysis. PMID:23031578
Comparative metagenomic analysis of soil microbial communities across three hexachlorocyclohexane contamination levels. PMID:23029440
Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut. PMID:23022739
Changes in human gut flora with age: an Indian familial study. PMID:23013146
Analysis of the genome of Mycobacterium abscessus strain M94 reveals an uncommon cluster of tRNAs. PMID:23012295
Genome sequence of a cold-adaptable sulfamethoxazole-degrading bacterium, Pseudomonas psychrophila HA-4. PMID:23012293
Genome sequence of a highly efficient aerobic denitrifying bacterium, Pseudomonas stutzeri T13. PMID:23012292
Genome sequence of a nicotine-degrading strain of Arthrobacter. PMID:23012289
Genome sequence of the methanotrophic poly-β-hydroxybutyrate producer Methylocystis parvus OBBP. PMID:23012286
Draft genome sequence of Bacillus endophyticus 2102. PMID:23012284
Genome sequence of Reyranella massiliensis, a bacterium associated with amoebae. PMID:23012280
Genome sequence of the plant pathogen Pseudomonas syringae pv. panici LMG 2367. PMID:23012277
Draft genome sequence of Halomonas smyrnensis AAD6T. PMID:23012275
Genome sequence of the alkaliphilic bacterium Nitritalea halalkaliphila type strain LW7, isolated from Lonar Lake, India. PMID:23012274
Genetic barcodes for improved environmental tracking of an anthrax simulant. PMID:23001658
Complete Genome Sequence of IME13, a Stenotrophomonas maltophilia bacteriophage with large burst size and unique plaque polymorphism. PMID:22997416
The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes. PMID:22975720
Antimicrobial treatment and containment measures for an extremely drug-resistant Klebsiella pneumoniae ST101 isolate carrying pKPN101-IT, a novel fully sequenced bla(KPC-2) plasmid. PMID:22972824
Integrative genomic analysis identifies isoleucine and CodY as regulators of Listeria monocytogenes virulence. PMID:22969433
Complete genome sequence of the porcine isolate Enterococcus faecalis D32. PMID:22965105
Genome sequences of Brucella melitensis 16M and its two derivatives 16M1w and 16M13w, which evolved in vivo. PMID:22965104
Draft genome sequences of Enterobacter sp. isolate Ag1 from the midgut of the malaria mosquito Anopheles gambiae. PMID:22965099
Genome sequence of the rice pathogen Pseudomonas fuscovaginae CB98818. PMID:22965098
Genome sequence of the plant growth-promoting rhizobacterium Bacillus sp. strain 916. PMID:22965091
Draft genome sequence of Flavobacterium sp. strain F52, isolated from the rhizosphere of bell pepper (Capsicum annuum L. cv. Maccabi). PMID:22965088
Draft genome sequence of Lactobacillus rossiae DSM 15814(T). PMID:22965087
Complete genome sequence of Klebsiella oxytoca E718, a New Delhi metallo-β-lactamase-1-producing nosocomial strain. PMID:22965083
Draft genome sequence of Moritella dasanensis strain ArB 0140, a psychrophilic bacterium isolated from the Arctic Ocean. PMID:22965082
Genome sequence of Brucella melitensis S66, an isolate of sequence type 8, prevalent in China. PMID:22965081
Draft genome sequence of Pseudomonas sp. strain Ag1, isolated from the midgut of the malaria mosquito Anopheles gambiae. PMID:22965079
Tracing genomic variations in two highly virulent Yersinia enterocolitica strains with unequal ability to compete for host colonization. PMID:22963272
Intestinal tissues induce an SNP mutation in Pseudomonas aeruginosa that enhances its virulence: possible role in anastomotic leak. PMID:22952955
Phylogenetic and functional metagenomic profiling for assessing microbial biodiversity in environmental monitoring. PMID:22952724
Genotypic and phenotypic evaluation of the evolution of high-level daptomycin nonsusceptibility in vancomycin-resistant Enterococcus faecium. PMID:22948885
Molybdoenzyme that catalyzes the anaerobic hydroxylation of a tertiary carbon atom in the side chain of cholesterol. PMID:22942275
Genome sequence of Acinetobacter sp. strain HA, isolated from the gut of the polyphagous insect pest Helicoverpa armigera. PMID:22933775
Draft genome sequence of Alcaligenes faecalis subsp. faecalis NCIB 8687 (CCUG 2071). PMID:22933773
Draft genome sequence of the human pathogen Halomonas stevensii S18214T. PMID:22933767
Genome analysis of Mycobacterium massiliense strain M172, which contains a putative mycobacteriophage. PMID:22933758
Insights from the genome sequence of a Salmonella enterica serovar Typhi strain associated with a sporadic case of typhoid fever in Malaysia. PMID:22933756
Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients with fatal and nonfatal typhoid fever in Papua New Guinea. PMID:22933755
Genome sequence of n-alkane-degrading Hydrocarboniphaga effusa strain AP103T (ATCC BAA-332T). PMID:22933753
Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway. PMID:22930339
pEl1573 Carrying blaIMP-4, from Sydney, Australia, is closely related to other IncL/M plasmids. PMID:22926566
Genome sequence of the broad-host-range Pseudomonas phage Φ-S1. PMID:22923799
Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium. PMID:22923396
Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources. PMID:22920915
A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data. PMID:22919648
Comparative genomics of the Staphylococcus intermedius group of animal pathogens. PMID:22919635
Biochemical and structural insights into xylan utilization by the thermophilic bacterium Caldanaerobius polysaccharolyticus. PMID:22918832
Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PMID:22911766
Virioplankton community structure in Tunisian solar salterns. PMID:22904045
The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. PMID:22889830
Draft genome sequence of Pseudomonas sp. strain M47T1, carried by Bursaphelenchus xylophilus isolated from Pinus pinaster. PMID:22887683
Genomic Analysis of Mycobacterium massiliense strain M115, an isolate from human sputum. PMID:22887681
Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil. PMID:22887679
Genome sequence of Pseudomonas putida strain SJTE-1, a bacterium capable of degrading estrogens and persistent organic pollutants. PMID:22887678
Annotated genome sequence of Mycobacterium massiliense strain M154, belonging to the recently created taxon Mycobacterium abscessus subsp. bolletii comb. nov. PMID:22887675
Genome sequence of Parascardovia denticolens IPLA 20019, isolated from human breast milk. PMID:22887674
Whole-genome shotgun sequencing of the extremophile Alkalibacillus haloalkaliphilus C-5, of Indian origin. PMID:22887673
Draft genome sequence of the hydrocarbon-degrading and emulsan-producing strain Acinetobacter venetianus RAG-1T. PMID:22887671
Genome sequence of Xanthomonas campestris JX, an industrially productive strain for Xanthan gum. PMID:22887662
Genome sequence of the lactate-utilizing Pseudomonas aeruginosa strain XMG. PMID:22887660
Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species. PMID:22887657
Whole-genome shotgun sequence of the sulfur-oxidizing chemoautotroph Pseudaminobacter salicylatoxidans KCT001. PMID:22887656
Draft genome sequence of Paenibacillus polymyxa OSY-DF, which coproduces a lantibiotic, paenibacillin, and polymyxin E1. PMID:22887654
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity. PMID:22864262
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. PMID:22863732
Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. PMID:22848480
Complete genome sequence of Croceibacter bacteriophage P2559S. PMID:22843867
Complete genome sequence of Marinomonas bacteriophage P12026. PMID:22843865
Complete genome sequences of two Persicivirga bacteriophages, P12024S and P12024L. PMID:22843864
Stomatobaculum longum gen. nov., sp. nov., an obligately anaerobic bacterium from the human oral cavity. PMID:22843721
Draft genome sequence of the soil bacterium Burkholderia terrae strain BS001, which interacts with fungal surface structures. PMID:22843604
Genome sequence of the plant growth-promoting bacterium Enterobacter cloacae GS1. PMID:22843603
Draft genome sequence of Mycobacterium bolletii strain M24, a rapidly growing mycobacterium of contentious taxonomic status. PMID:22843600
Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium. PMID:22843598
Genome sequence of the Antarctic psychrophile bacterium Planococcus antarcticus DSM 14505. PMID:22843594
Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities. PMID:22843592
Genome sequence of a novel indigo-producing strain, Pseudomonas monteilii QM. PMID:22843591
Genome sequence of Klebsiella pneumoniae LZ, a potential platform strain for 1,3-propanediol production. PMID:22843590
Genome sequence of the rice pathogen Dickeya zeae strain ZJU1202. PMID:22843587
Draft genome sequence and comparative analysis of the superb aromatic-hydrocarbon degrader Rhodococcus sp. strain DK17. PMID:22843580
Complete genome sequence of the endophytic bacterium Burkholderia sp. strain KJ006. PMID:22843575
Draft genome sequence of Ureibacillus thermosphaericus strain thermo-BF, isolated from Ramsar hot springs in Iran. PMID:22843574
Genome sequence of the polychlorinated-biphenyl degrader Pseudomonas pseudoalcaligenes KF707. PMID:22843571
Molecular and biochemical analyses of the GH44 module of CbMan5B/Cel44A, a bifunctional enzyme from the hyperthermophilic bacterium Caldicellulosiruptor bescii. PMID:22843537
Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community. PMID:22823523
Predictive sequence analysis of the Candidatus Liberibacter asiaticus proteome. PMID:22815919
Genome sequence of Herbaspirillum sp. strain GW103, a plant growth-promoting bacterium. PMID:22815460
Draft genome sequence of the plant growth-promoting bacterium Bacillus siamensis KCTC 13613T. PMID:22815459
Draft genome sequence of Arctic marine Bacterium Pseudoalteromonas issachenkonii PAMC 22718. PMID:22815453
Draft genome sequence of Herbaspirillum lusitanum P6-12, an endophyte isolated from root nodules of Phaseolus vulgaris. PMID:22815451
Genome sequences of two thermophilic Bacillus licheniformis strains, efficient producers of platform chemical 2,3-butanediol. PMID:22815449
Complete genome sequences of probiotic strains Bifidobacterium animalis subsp. lactis B420 and Bi-07. PMID:22815448
Genome sequence of Mycobacterium massiliense M18, isolated from a lymph node biopsy specimen. PMID:22815444
Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut. PMID:22800299
Vitamin B(12) synthesis and salvage pathways were acquired by horizontal gene transfer to the Thermotogales. PMID:22798452
Complete genome sequence of Celeribacter bacteriophage P12053L. PMID:22787270
Cyanobacteria of the genus prochlorothrix. PMID:22783229
In silico method for modelling metabolism and gene product expression at genome scale. PMID:22760628
Draft genome sequence of Serratia sp. strain M24T3, isolated from pinewood disease nematode Bursaphelenchus xylophilus. PMID:22740681
Genome sequence of the plant growth-promoting rhizobacterium Bacillus sp. strain JS. PMID:22740679
Genome sequence of the unclassified marine Gammaproteobacterium BDW918. PMID:22740675
Genome sequence of the Shiga toxin-producing Escherichia coli strain NCCP15657. PMID:22740674
Genome sequence of enterohemorrhagic Escherichia coli NCCP15658. PMID:22740673
Genome sequence of the hemolytic-uremic syndrome-causing strain Escherichia coli NCCP15647. PMID:22740672
Genome sequence of the marine bacterium Marinilabilia salmonicolor JCM 21150T. PMID:22740671
Genome sequence of Escherichia coli J53, a reference strain for genetic studies. PMID:22740669
Draft genome sequence of Gillisia sp. strain CBA3202, a novel member of the genus Gillisia, which belongs to the family Flavobacteriaceae. PMID:22740667
Draft genome sequence of Pedobacter agri PB92T, which belongs to the family Sphingobacteriaceae. PMID:22740666
Genome analysis of bovine-mastitis-associated Escherichia coli O32:H37 strain P4. PMID:22740662
Genome sequence of the halotolerant bacterium Imtechella halotolerans K1T. PMID:22740661
Genome sequence of Helicobacter pylori hpEurope strain N6. PMID:22740658
Bacterial responses to a simulated colon tumor microenvironment. PMID:22713208
Identification and characterization of Cronobacter iron acquisition systems. PMID:22706064
Diversification of the Salmonella fimbriae: a model of macro- and microevolution. PMID:22701679
Genetic fine structure of a Salmonella enterica serovar Typhi strain associated with the 2005 outbreak of typhoid fever in Kelantan, Malaysia. PMID:22689247
Whole-genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain. PMID:22689246
Genome sequence of a novel nicotine-degrading strain, Pseudomonas geniculata N1. PMID:22689240
Genome sequence of "Candidatus Aquiluna" sp. strain IMCC13023, a marine member of the Actinobacteria isolated from an arctic fjord. PMID:22689238
Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587. PMID:22689236
Draft genome sequence of the human pathogen Streptomyces somaliensis, a significant cause of actinomycetoma. PMID:22689234
Draft genome sequence of the nitrophenol-degrading actinomycete Rhodococcus imtechensis RKJ300. PMID:22689233
Genome sequence of Sphingomonas wittichii DP58, the first reported phenazine-1-carboxylic acid-degrading strain. PMID:22689229
Draft genome sequence of Thermus sp. strain RL, isolated from a hot water spring located atop the Himalayan ranges at Manikaran, India. PMID:22689228
Genome-wide characterization of Vibrio phage φpp2 with unique arrangements of the mob-like genes. PMID:22676552
Conceptualizing a Genomics Software Institute (GSI). PMID:22675605
Genome sequence of strain HIMB624, a cultured representative from the OM43 clade of marine Betaproteobacteria. PMID:22675594
Metagenomic and metabolic profiling of nonlithifying and lithifying stromatolitic mats of Highborne Cay, The Bahamas. PMID:22662280
Genome-wide study of the defective sucrose fermenter strain of Vibrio cholerae from the Latin American cholera epidemic. PMID:22662140
Forward genetic in planta screen for identification of plant-protective traits of Sphingomonas sp. strain Fr1 against Pseudomonas syringae DC3000. PMID:22660707
Genome sequence and mutational analysis of plant-growth-promoting bacterium Agrobacterium tumefaciens CCNWGS0286 Isolated from a zinc-lead mine tailing. PMID:22636006
Genome sequence of Diplorickettsia massiliensis, an emerging Ixodes ricinus-associated human pathogen. PMID:22628513
Genome sequence of the nitroaromatic compound-degrading Bacterium Burkholderia sp. strain SJ98. PMID:22628512
Complete genome sequence of Mycobacterium phlei type strain RIVM601174. PMID:22628511
Complete genome sequence of Mycobacterium xenopi type strain RIVM700367. PMID:22628510
Genome sequences of two plant growth-promoting fluorescent Pseudomonas strains, R62 and R81. PMID:22628504
Genome sequence of cold-adapted Pseudomonas mandelii strain JR-1. PMID:22628497
Molecular characterization of the 2011 Hong Kong scarlet fever outbreak. PMID:22615319
Genome sequence of thermotolerant Bacillus methanolicus: features and regulation related to methylotrophy and production of L-lysine and L-glutamate from methanol. PMID:22610424
Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars. PMID:22609915
Metabolic specialization and the assembly of microbial communities. PMID:22592822
Edwardsiella comparative phylogenomics reveal the new intra/inter-species taxonomic relationships, virulence evolution and niche adaptation mechanisms. PMID:22590641
Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of kiwifruit outbreaks belong to the same genetic lineage. PMID:22590555
The chimeric genome of Sphaerochaeta: nonspiral spirochetes that break with the prevalent dogma in spirochete biology. PMID:22589287
Metagenomics - a guide from sampling to data analysis. PMID:22587947
Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus. PMID:22586090
Genome sequence of Sphingomonas sp. strain PAMC 26621, an Arctic-lichen-associated bacterium isolated from a Cetraria sp. PMID:22582384
Genome sequences of the ethanol-tolerant Lactobacillus vini strains LMG 23202T and JP7.8.9. PMID:22582376
Genome sequence of the probiotic bacterium Sporolactobacillus vineae SL153T. PMID:22582374
Complete genome sequence of Melissococcus plutonius DAT561, a strain that shows an unusual growth profile and is representative of an endemic cluster in Japan. PMID:22582373
Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259. PMID:22582372
Draft genome sequence of a Sphingomonas sp., an endosymbiotic bacterium isolated from an arctic lichen Umbilicaria sp. PMID:22582371
Genome sequence of Lactobacillus salivarius SMXD51, a potential probiotic strain isolated from chicken cecum, showing anti-campylobacter activity. PMID:22582370
MicrobeDB: a locally maintainable database of microbial genomic sequences. PMID:22576174
Complete genome sequence of the giant Pseudomonas phage Lu11. PMID:22570243
The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium. PMID:22568606
A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T. PMID:22559199
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response. PMID:22546241
Genetic and functional characterization of cyclic lipopeptide white-line-inducing principle (WLIP) production by rice rhizosphere isolate Pseudomonas putida RW10S2. PMID:22544260
Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source. PMID:22535948
Complete genome sequence of a sucrose-nonfermenting epidemic strain of Vibrio cholerae O1 from Brazil. PMID:22535947
Complete annotated genome sequence of Mycobacterium tuberculosis Erdman. PMID:22535945
Draft genome sequence of Pseudomonas fuscovaginae, a broad-host-range pathogen of plants. PMID:22535942
Genome sequence of the bacterioplanktonic, mixotrophic Vibrio campbellii strain PEL22A, isolated in the Abrolhos Bank. PMID:22535939
Genome sequence of the anaerobic bacterium Clostridium arbusti SL206(T). PMID:22535938
Draft genome sequence of Mycobacterium abscessus subsp. bolletii BD(T). PMID:22535937
Genome sequence of Myroides injenensis M09-0166(T), isolated from clinical specimens. PMID:22535932
Analysis of a Streptococcus pyogenes puerperal sepsis cluster by use of whole-genome sequencing. PMID:22518858
Genome sequence of Peptoniphilus rhinitidis 1-13T, an anaerobic coccus strain isolated from clinical specimens. PMID:22493209
Genome sequence of a Salinibacterium sp. isolated from Antarctic soil. PMID:22493208
Genome sequence of a novel member of the genus Psychrobacter isolated from Antarctic soil. PMID:22493207
Genome sequence of the polyhydroxybutyrate producer Pseudomonas extremaustralis, a highly stress-resistant Antarctic bacterium. PMID:22493195
CRISPR/cas loci of type II Propionibacterium acnes confer immunity against acquisition of mobile elements present in type I P. acnes. PMID:22479553
Complete genome sequence of Oceanimonas sp. GK1, a halotolerant bacterium from Gavkhouni Wetland in Iran. PMID:22461556
Genome sequence of Lactobacillus fructivorans KCTC 3543. PMID:22461550
Complete genome sequence of the African dairy isolate Streptococcus infantarius subsp. infantarius strain CJ18. PMID:22461547
Draft genome sequence of the shrimp pathogen Vibrio harveyi CAIM 1792. PMID:22461546
Genome sequence of the halophilic archaeon Halococcus hamelinensis. PMID:22461544
Genome sequence of extracellular-protease-producing Alishewanella jeotgali isolated from traditional Korean fermented seafood. PMID:22461542
Genome sequence of Janthinobacterium sp. strain PAMC 25724, isolated from alpine glacier cryoconite. PMID:22461541
Phylogenetic and functional diversity of metagenomic libraries of phenol degrading sludge from petroleum refinery wastewater treatment system. PMID:22452812
Simultaneous genome sequencing of symbionts and their hosts. PMID:22448083
Diversity of Melissococcus plutonius from honeybee larvae in Japan and experimental reproduction of European foulbrood with cultured atypical isolates. PMID:22442715
Key enzymes enabling the growth of Arthrobacter sp. strain JBH1 with nitroglycerin as the sole source of carbon and nitrogen. PMID:22427495
Genome sequence of Pseudomonas sp. strain PAMC 25886, isolated from alpine glacial cryoconite. PMID:22408245
Draft genome sequence of Sphingomonas echinoides ATCC 14820. PMID:22408244
Complete genome sequence of the dairy isolate Streptococcus macedonicus ACA-DC 198. PMID:22408241
The automatic annotation of bacterial genomes. PMID:22408191
Identification and characterization of a lipopolysaccharide α,2,3-sialyltransferase from the human pathogen Helicobacter bizzozeronii. PMID:22408169
Bacteriophages φMR299-2 and φNH-4 can eliminate Pseudomonas aeruginosa in the murine lung and on cystic fibrosis lung airway cells. PMID:22396480
Major families of multiresistant plasmids from geographically and epidemiologically diverse staphylococci. PMID:22384369
Sigma E regulators control hemolytic activity and virulence in a shrimp pathogenic Vibrio harveyi. PMID:22384269
Complete genome sequence of the highly hemolytic strain Bacillus cereus F837/76. PMID:22374959
Draft genome sequence of Pseudomonas psychrotolerans L19, isolated from copper alloy coins. PMID:22374955
Genome sequence of Sphingomonas sp. strain PAMC 26605, isolated from Arctic lichen (Ochrolechia sp.). PMID:22374946
Patterns of gene flow define species of thermophilic Archaea. PMID:22363207
BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins. PMID:22335941
Insight into the transmission biology and species-specific functional capabilities of tsetse (Diptera: glossinidae) obligate symbiont Wigglesworthia. PMID:22334516
Draft genome of Pseudomonas stutzeri strain ZoBell (CCUG 16156), a marine isolate and model organism for denitrification studies. PMID:22328767
Genome sequence of the biocontrol strain Pseudomonas fluorescens F113. PMID:22328765
Complete genome sequence of the beer spoilage organism Pediococcus claussenii ATCC BAA-344T. PMID:22328764
Genome sequence of Pseudomonas chlororaphis GP72, a root-colonizing biocontrol strain. PMID:22328763
Draft genome sequence of Sinorhizobium meliloti CCNWSX0020, a nitrogen-fixing symbiont with copper tolerance capability isolated from lead-zinc mine tailings. PMID:22328762
Genome sequences of Lactococcus garvieae TB25, isolated from Italian cheese, and Lactococcus garvieae LG9, isolated from Italian rainbow trout. PMID:22328751
Draft genome sequence of Commensalibacter intestini A911T, a symbiotic bacterium isolated from Drosophila melanogaster intestine. PMID:22328749
Draft genome sequence of Gluconobacter morbifer G707T, a pathogenic gut bacterium isolated from Drosophila melanogaster intestine. PMID:22328748
Genome sequence of the highly efficient arsenite-oxidizing bacterium Achromobacter arsenitoxydans SY8. PMID:22328747
Complete genome sequence of Lactococcus lactis subsp. cremoris A76. PMID:22328746
Draft genome sequence of Paenibacillus peoriae strain KCTC 3763T. PMID:22328743
A metabolic network approach for the identification and prioritization of antimicrobial drug targets. PMID:22300758
Complete genome sequence of Brucella suis VBI22, isolated from bovine milk. PMID:22275106
Genome sequence of benzo(a)pyrene-degrading bacterium Novosphingobium pentaromativorans US6-1. PMID:22275104
Genome sequence of the marine bacterium Vibrio campbellii DS40M4, isolated from open ocean water. PMID:22275102
Genome sequence of the arsenite-oxidizing strain Agrobacterium tumefaciens 5A. PMID:22275101
Genome sequence of deep-sea manganese-oxidizing bacterium Marinobacter manganoxydans MnI7-9. PMID:22275098
Genome sequence of Enterobacter cloacae subsp. dissolvens SDM, an efficient biomass-utilizing producer of platform chemical 2,3-butanediol. PMID:22275097
Genome sequence of Pseudomonas stutzeri SDM-LAC, a typical strain for studying the molecular mechanism of lactate utilization. PMID:22275095
pJIE137 carrying blaCTX-M-62 is closely related to p271A carrying blaNDM-1. PMID:22252811
Complete genome sequence of Salmonella enterica serovar pullorum RKS5078. PMID:22247537
Draft genome sequence of plant growth-promoting rhizobium Mesorhizobium amorphae, isolated from zinc-lead mine tailings. PMID:22247533
Draft genome sequences of the biocontrol bacterium Mitsuaria sp. strain H24L5A. PMID:22247532
Draft genome sequence of Pantoea ananatis B1-9, a nonpathogenic plant growth-promoting bacterium. PMID:22247529
Draft genome sequences of the Pseudomonas fluorescens biocontrol strains Wayne1R and Wood1R. PMID:22247526
Identification of the herboxidiene biosynthetic gene cluster in Streptomyces chromofuscus ATCC 49982. PMID:22247174
Characterization of the ELPhiS prophage from Salmonella enterica serovar Enteritidis strain LK5. PMID:22247173
FSL J1-208, a virulent uncommon phylogenetic lineage IV Listeria monocytogenes strain with a small chromosome size and a putative virulence plasmid carrying internalin-like genes. PMID:22247147
Genomic characterization of the Taylorella genus. PMID:22235352
Functional divergence in the genus Oenococcus as predicted by genome sequencing of the newly-described species, Oenococcus kitaharae. PMID:22235313
Metagenomic evidence for h(2) oxidation and h(2) production by serpentinite-hosted subsurface microbial communities. PMID:22232619
Two Strains of Crocosphaera watsonii with Highly Conserved Genomes are Distinguished by Strain-Specific Features. PMID:22232617
The FGGY carbohydrate kinase family: insights into the evolution of functional specificities. PMID:22215998
Draft genome sequence of Enterococcus mundtii CRL1656. PMID:22207752
Shotgun genome sequence of a Yersinia enterocolitica isolate from the Philippines. PMID:22207747
Draft genome sequence of Leucobacter chromiiresistens, an extremely chromium-tolerant strain. PMID:22207746
Genome sequence of the bacteriocin-producing Lactobacillus curvatus strain CRL705. PMID:22207745
Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones. PMID:22203982
Comparative genomic analysis of bacteriophage EP23 infecting Shigella sonnei and Escherichia coli. PMID:22203555
Solving the Problem: Genome Annotation Standards before the Data Deluge. PMID:22180819
Draft genome sequence of Caminibacter mediatlanticus strain TB-2, an epsilonproteobacterium isolated from a deep-sea hydrothermal vent. PMID:22180817
Directed evaluation of enterotoxigenic Escherichia coli autotransporter proteins as putative vaccine candidates. PMID:22163060
Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. PMID:22158392
Draft genome sequence of Halomonas sp. strain HAL1, a moderately halophilic arsenite-oxidizing bacterium isolated from gold-mine soil. PMID:22156396
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome. PMID:22156394
Identification and removal of ribosomal RNA sequences from metatranscriptomes. PMID:22155869
Use of recombinase-based in vivo expression technology to characterize Enterococcus faecalis gene expression during infection identifies in vivo-expressed antisense RNAs and implicates the protease Eep in pathogenesis. PMID:22144481
Genome majority vote improves gene predictions. PMID:22131910
Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide. PMID:22123768
Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum. PMID:22123766
Genome sequence of Pseudomonas putida Idaho, a unique organic-solvent-tolerant bacterium. PMID:22123764
Complete genome sequence of highly multidrug-resistant Pseudomonas aeruginosa NCGM2.S1, a representative strain of a cluster endemic to Japan. PMID:22123763
Proteogenomic analysis of bacteria and archaea: a 46 organism case study. PMID:22114679
Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses. PMID:22111657
Use of low-coverage, large-insert, short-read data for rapid and accurate generation of enhanced-quality draft Pseudomonas genome sequences. PMID:22073286
Draft genome sequence of the biocontrol bacterium Chromobacterium sp. strain C-61. PMID:22072653
Genome sequence of Bifidobacterium breve DPC 6330, a strain isolated from the human intestine. PMID:22072651
Draft genome sequence of the biocontrol bacterium Pseudomonas putida B001, an oligotrophic bacterium that induces systemic resistance to plant diseases. PMID:22072649
Genome sequence of clinical isolate Mycobacterium tuberculosis NCGM2209. PMID:22072647
Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds. PMID:22072645
A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle. PMID:22056929
Comparative genomics of Helicobacter pylori and the human-derived Helicobacter bizzozeronii CIII-1 strain reveal the molecular basis of the zoonotic nature of non-pylori gastric Helicobacter infections in humans. PMID:22039924
Genome sequence of Rhodococcus erythropolis XP, a biodesulfurizing bacterium with industrial potential. PMID:22038975
Genome sequence of Brachybacterium squillarum M-6-3(T), isolated from salt-fermented seafood. PMID:22038973
Draft genome of Streptomyces zinciresistens K42, a novel metal-resistant species isolated from copper-zinc mine tailings. PMID:22038968
Genome sequence of Sphingobium yanoikuyae XLDN2-5, an efficient carbazole-degrading strain. PMID:22038966
Genome sequence of the bacteriocin-producing oral probiotic Streptococcus salivarius strain M18. PMID:22038965
Genome sequence of Bacillus pumilus S-1, an efficient isoeugenol-utilizing producer for natural vanillin. PMID:22038964
Genome sequence of the thermophilic strain Bacillus coagulans XZL4, an efficient pentose-utilizing producer of chemicals. PMID:22038963
Genome sequence of multidrug-resistant Pseudomonas aeruginosa NCGM1179. PMID:22038962
Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing. PMID:22028928
Sequence and role in virulence of the three plasmid complement of the model tumor-inducing bacterium Pseudomonas savastanoi pv. savastanoi NCPPB 3335. PMID:22022435
Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics. PMID:22011719
Whole-genome sequence of Streptococcus pseudopneumoniae isolate IS7493. PMID:21994930
Genome sequence of Leuconostoc carnosum KCTC 3525. PMID:21994929
First draft genome sequence of a strain from the genus Citricoccus. PMID:21994924
Genomic and proteomic analyses of Mycobacterium bovis BCG Mexico 1931 reveal a diverse immunogenic repertoire against tuberculosis infection. PMID:21981907
Characterization and quantitation of a novel β-lactamase gene found in a wastewater treatment facility and the surrounding coastal ecosystem. PMID:21965412
Phylogenomic analysis of Odyssella thessalonicensis fortifies the common origin of Rickettsiales, Pelagibacter ubique and Reclimonas americana mitochondrion. PMID:21957463
Dynamic gut microbiome across life history of the malaria mosquito Anopheles gambiae in Kenya. PMID:21957459
Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4. PMID:21951522
Role of Sphingomonas sp. strain Fr1 PhyR-NepR-σEcfG cascade in general stress response and identification of a negative regulator of PhyR. PMID:21949070
The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. PMID:21925113
Genome sequence of Pasteurella multocida subsp. gallicida Anand1_poultry. PMID:21914901
Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide. PMID:21914898
Genome sequence of Lactobacillus versmoldensis KCTC 3814. PMID:21914893
Draft genome sequence of Nesterenkonia sp. strain F, isolated from Aran-Bidgol Salt Lake in Iran. PMID:21914888
Complete genome sequence of Rickettsia heilongjiangensis, an emerging tick-transmitted human pathogen. PMID:21914880
Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis. PMID:21914874
Draft genome sequence of Lactobacillus malefermentans KCTC 3548. PMID:21914865
Genome sequence of Lactobacillus suebicus KCTC 3549. PMID:21914862
WebMGA: a customizable web server for fast metagenomic sequence analysis. PMID:21899761
Global distribution of Polaromonas phylotypes--evidence for a highly successful dispersal capacity. PMID:21897856
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species. PMID:21896772
CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing. PMID:21878105
The Photobacterium damselae subsp. damselae hemolysins damselysin and HlyA are encoded within a new virulence plasmid. PMID:21875966
Draft genome sequence of Lactobacillus zeae KCTC 3804. PMID:21868802
Genome sequence of the halotolerant marine bacterium Myxococcus fulvus HW-1. PMID:21868801
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica. PMID:21859443
Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. PMID:21846360
Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. PMID:21840973
Hydrogen is an energy source for hydrothermal vent symbioses. PMID:21833083
Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity. PMID:21829448
Genomic analysis reveals multiple [FeFe] hydrogenases and hydrogen sensors encoded by treponemes from the H(2)-rich termite gut. PMID:21811792
Synergistic use of plant-prokaryote comparative genomics for functional annotations. PMID:21810204
SEAS: a system for SEED-based pathway enrichment analysis. PMID:21799897
Chlamydia psittaci genetic variants differ in virulence by modulation of host immunity. PMID:21791668
Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies. PMID:21771858
Genome sequence of Lactobacillus salivarius GJ-24, a probiotic strain isolated from healthy adult intestine. PMID:21742893
Draft genome sequence of Lactobacillus mali KCTC 3596. PMID:21742889
Genome sequence of Idiomarina sp. strain A28L, isolated from Pangong Lake, India. PMID:21742887
Genome sequence of Lactobacillus johnsonii PF01, isolated from piglet feces. PMID:21742886
Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium. PMID:21742878
Genome sequence of Rheinheimera sp. strain A13L, isolated from Pangong Lake, India. PMID:21742876
Genome sequence of the newly isolated chemolithoautotrophic Bradyrhizobiaceae strain SG-6C. PMID:21742875
Draft genome sequence of the polycyclic aromatic hydrocarbon-degrading, genetically engineered bioluminescent bioreporter Pseudomonas fluorescens HK44. PMID:21742869
Genome sequence of Lactobacillus cypricasei KCTC 13900. PMID:21742864
Yersinia enterocolitica palearctica serobiotype O:3/4--a successful group of emerging zoonotic pathogens. PMID:21733159
Genome sequence of Leuconostoc pseudomesenteroides KCTC 3652. PMID:21705609
Genome sequence of Helicobacter bizzozeronii strain CIII-1, an isolate from human gastric mucosa. PMID:21705603
Complete genome sequence of the obligate piezophilic hyperthermophilic archaeon Pyrococcus yayanosii CH1. PMID:21705594
Genome sequence of Halorhabdus tiamatea, the first archaeon isolated from a deep-sea anoxic brine lake. PMID:21705593
Draft genome sequences of two Pseudomonas aeruginosa clinical isolates with different antibiotic susceptibilities. PMID:21705591
Genome sequence of Salinisphaera shabanensis, a gammaproteobacterium from the harsh, variable environment of the brine-seawater interface of the Shaban Deep in the Red Sea. PMID:21705588
Genome analysis of a Mycoplasma hyorhinis strain derived from a primary human melanoma cell line. PMID:21705582
Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India. PMID:21685291
Genome sequence of Acinetobacter sp. strain P8-3-8, isolated from Fistularia commersonii in Vietnam. PMID:21685286
Draft genome sequence of Streptomyces strain S4, a symbiont of the leaf-cutting ant Acromyrmex octospinosus. PMID:21685285
Draft genome sequence of Methylophaga aminisulfidivorans MP T. PMID:21685284
Genome sequence of the 17β-estradiol-utilizing bacterium Sphingomonas strain KC8. PMID:21685282
Draft genome sequence of Kocuria rhizophila P7-4. PMID:21685281
Genome sequence of Lactococcus garvieae 8831, isolated from rainbow trout lactococcosis outbreaks in Spain. PMID:21685280
Biochemical analyses of multiple endoxylanases from the rumen bacterium Ruminococcus albus 8 and their synergistic activities with accessory hemicellulose-degrading enzymes. PMID:21666020
Common ancestry and novel genetic traits of Francisella novicida-like isolates from North America and Australia as revealed by comparative genomic analyses. PMID:21666011
Complete genome sequence of Melissococcus plutonius ATCC 35311. PMID:21622755
Genome sequence of Lactococcus garvieae 21881, isolated in a case of human septicemia. PMID:21622739
Genome sequence of Sphingomonas sp. S17, isolated from an alkaline, hyperarsenic, and hypersaline volcano-associated lake at high altitude in the Argentinean Puna. PMID:21602338
Genome sequence of strain IMCC1989, a novel member of the marine gammaproteobacteria. PMID:21602334
Genome sequence of Escherichia coli AA86, isolated from cow feces. PMID:21602332
Genome sequence of Lactococcus garvieae UNIUD074, isolated in Italy from a lactococcosis outbreak. PMID:21602331
Genome sequence of strain IMCC2047, a novel marine member of the Gammaproteobacteria. PMID:21602327
Complete genome sequence of the marine fish pathogen Vibrio anguillarum harboring the pJM1 virulence plasmid and genomic comparison with other virulent strains of V. anguillarum and V. ordalii. PMID:21576332
Genome sequence of strain IMCC9480, a xanthorhodopsin-bearing betaproteobacterium isolated from the Arctic Ocean. PMID:21572000
Draft genome of Phaeobacter gallaeciensis ANG1, a dominant member of the accessory nidamental gland of Euprymna scolopes. PMID:21551313
Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032. PMID:21551311
Genome sequence of strain IMCC3088, a proteorhodopsin-containing marine bacterium belonging to the OM60/NOR5 clade. PMID:21551310
Genome sequence of strain TW15, a novel member of the genus Ruegeria, belonging to the marine Roseobacter clade. PMID:21551304
Complete genome sequence of Bacillus amyloliquefaciens LL3, which exhibits glutamic acid-independent production of poly-γ-glutamic acid. PMID:21551302
Complete genome of Pseudomonas mendocina NK-01, which synthesizes medium-chain-length polyhydroxyalkanoates and alginate oligosaccharides. PMID:21551299
Streptococcus pneumoniae serotype 6C: an intra- and interclonal complex comparison. PMID:21551297
Genome sequence of Vibrio rotiferianus strain DAT722. PMID:21551292
Host specific diversity in Lactobacillus johnsonii as evidenced by a major chromosomal inversion and phage resistance mechanisms. PMID:21533100
Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus. PMID:21531921
Searching in microbial genomes for encoded small proteins. PMID:21518296
Complete genome sequence of strain IMCC9063, belonging to SAR11 subgroup 3, isolated from the Arctic Ocean. PMID:21515764
Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient. PMID:21515762
Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model. PMID:21489287
Complete genome sequencing of Lactobacillus acidophilus 30SC, isolated from swine intestine. PMID:21478365
Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant. PMID:21464989
Genome sequence of strain TW25, a novel member of the genus Ornithinibacillus in the family Bacillaceae. PMID:21460087
Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire. PMID:21451583
Complete sequencing of pNDM-HK encoding NDM-1 carbapenemase from a multidrug-resistant Escherichia coli strain isolated in Hong Kong. PMID:21445317
Draft genome sequence of Caloramator australicus strain RC3T, a thermoanaerobe from the Great Artesian Basin of Australia. PMID:21421756
AGeS: a software system for microbial genome sequence annotation. PMID:21408217
Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value. PMID:21399751
Genome sequence of Acinetobacter baumannii MDR-TJ. PMID:21398552
Genome sequences of two Staphylococcus aureus ovine strains that induce severe (strain O11) and mild (strain O46) mastitis. PMID:21398544
Complete genome sequence of the proteolytic Clostridium botulinum type A5 (B3') strain H04402 065. PMID:21378191
Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain. PMID:21378186
Complete genome sequence of Vibrio vulnificus MO6-24/O. PMID:21317338
Metagenomic analysis of kimchi, a traditional Korean fermented food. PMID:21317261
RATT: Rapid Annotation Transfer Tool. PMID:21306991
Two genome sequences of the same bacterial strain, Gluconacetobacter diazotrophicus PAl 5, suggest a new standard in genome sequence submission. PMID:21304715
Complete genome sequence of Yersinia enterocolitica subsp. palearctica serogroup O:3. PMID:21296963
Complete genome sequence of the veterinary pathogen Staphylococcus pseudintermedius strain HKU10-03, isolated in a case of canine pyoderma. PMID:21278300
Genome sequence of Taylorella equigenitalis MCE9, the causative agent of contagious equine metritis. PMID:21278298
Coral-mucus-associated Vibrio integrons in the Great Barrier Reef: genomic hotspots for environmental adaptation. PMID:21270840
Genome sequence of Lactobacillus farciminis KCTC 3681. PMID:21257766
Genome (re-)annotation and open-source annotation pipelines. PMID:21255336
Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery. PMID:21245845
Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP. PMID:21217005
Complete genome sequence of Campylobacter jejuni strain S3. PMID:21217004
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. PMID:21217001
IPRStats: visualization of the functional potential of an InterProScan run. PMID:21210980
Genome sequence of Leuconostoc inhae KCTC 3774, isolated from Kimchi. PMID:21183671
Genome sequence of Lactobacillus animalis KCTC 3501. PMID:21183665
A novel antifungal Pseudomonas fluorescens isolated from potato soils in Greenland. PMID:21165740
Genome sequence of Lactobacillus coryniformis subsp. coryniformis KCTC 3167. PMID:21148735
Genome Sequence of Leuconostoc gelidum KCTC 3527, Isolated from Kimchi. PMID:21131494
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss. PMID:21126366
Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial mutualist. PMID:21126349
A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production. PMID:21118570
Ongoing purifying selection on intergenic spacers in group A streptococcus. PMID:21115137
Genome Sequence of Weissella cibaria KACC 11862. PMID:21097615
Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8. PMID:21097610
Comparative genomics of clinical and environmental Vibrio mimicus. PMID:21078967
Genome sequence of Leuconostoc fallax KCTC 3537. PMID:21075921
Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing. PMID:21040513
Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order "Parvularculales" in the class Alphaproteobacteria. PMID:21037002
Complete genome sequence of a carbon monoxide-utilizing acetogen, Eubacterium limosum KIST612. PMID:21036996
Genome sequence of strain HTCC2083, a novel member of the marine clade Roseobacter. PMID:21036993
Genome sequence of Oceanicaulis sp. strain HTCC2633, isolated from the Western Sargasso Sea. PMID:21036991
Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera. PMID:20973996
Marine microbial genomics in Europe: current status and perspectives. PMID:20953416
Genome sequence of Leuconostoc argentinum KCTC 3773. PMID:20952569
Genome of Helicobacter pylori strain 908. PMID:20952566
Advanced computational algorithms for microbial community analysis using massive 16S rRNA sequence data. PMID:20929878
A three-way comparative genomic analysis of Mannheimia haemolytica isolates. PMID:20920355
Draft genome sequence of Streptomyces clavuligerus NRRL 3585, a producer of diverse secondary metabolites. PMID:20889745
Genomic analysis of carbon monoxide utilization and butanol production by Clostridium carboxidivorans strain P7. PMID:20885952
Genomic encyclopedia of sugar utilization pathways in the Shewanella genus. PMID:20836887
FragGeneScan: predicting genes in short and error-prone reads. PMID:20805240
High-throughput generation, optimization and analysis of genome-scale metabolic models. PMID:20802497
A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus. PMID:20796277
Characterization and genomic analysis of chromate resistant and reducing Bacillus cereus strain SJ1. PMID:20723231
Functional characterization of pGKT2, a 182-kilobase plasmid containing the xplAB genes, which are involved in the degradation of hexahydro-1,3,5-trinitro-1,3,5-triazine by Gordonia sp. strain KTR9. PMID:20709853
Genome sequencing reveals widespread virulence gene exchange among human Neisseria species. PMID:20676376
Human hypervirulent Clostridium difficile strains exhibit increased sporulation as well as robust toxin production. PMID:20675495
Complete genome sequence of the diesel-degrading Acinetobacter sp. strain DR1. PMID:20639327
Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation. PMID:20624747
Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes. PMID:20622018
Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon. PMID:20601480
Emergence of resistance among USA300 methicillin-resistant Staphylococcus aureus isolates causing invasive disease in the United States. PMID:20585117
Comparative analyses of two thermophilic enzymes exhibiting both beta-1,4 mannosidic and beta-1,4 glucosidic cleavage activities from Caldanaerobius polysaccharolyticus. PMID:20562312
Accessing the SEED genome databases via Web services API: tools for programmers. PMID:20546611
De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads. PMID:20544019
Identification of novel pathogenicity loci in Clostridium perfringens strains that cause avian necrotic enteritis. PMID:20532244
A computational genomics pipeline for prokaryotic sequencing projects. PMID:20519285
Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae. PMID:20507608
Enterotoxigenic Escherichia coli elicits immune responses to multiple surface proteins. PMID:20457787
Metagenomic analysis of apple orchard soil reveals antibiotic resistance genes encoding predicted bifunctional proteins. PMID:20453147
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. PMID:20436475
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. PMID:20426874
Sequencing and genetic variation of multidrug resistance plasmids in Klebsiella pneumoniae. PMID:20405037
A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion. PMID:20393580
A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus. PMID:20386717
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. PMID:20368178
Genome sequence of hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and comparative genomics with V. cholerae. PMID:20348258
Transposases are the most abundant, most ubiquitous genes in nature. PMID:20215432
Functional diversity of four glycoside hydrolase family 3 enzymes from the rumen bacterium Prevotella bryantii B14. PMID:20190048
DraGnET: software for storing, managing and analyzing annotated draft genome sequence data. PMID:20175920
Biosynthesis of rhizocticins, antifungal phosphonate oligopeptides produced by Bacillus subtilis ATCC6633. PMID:20142038
Differential gene retention in plastids of common recent origin. PMID:20123796
A protocol for generating a high-quality genome-scale metabolic reconstruction. PMID:20057383
Complete genome sequence of Staphylococcus lugdunensis strain HKU09-01. PMID:20047907
Genome-wide dissection of globally emergent multi-drug resistant serotype 19A Streptococcus pneumoniae. PMID:20042094
Virulence factors encoded by Legionella longbeachae identified on the basis of the genome sequence analysis of clinical isolate D-4968. PMID:20008069
JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. PMID:19943962
Analysis and comparison of very large metagenomes with fast clustering and functional annotation. PMID:19863816
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PMID:19816605
Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. PMID:19804621
Novel electrochemically active bacterium phylogenetically related to Arcobacter butzleri, isolated from a microbial fuel cell. PMID:19801475
FIGfams: yet another set of protein families. PMID:19762480
The novel polysaccharide deacetylase homologue Pdi contributes to virulence of the aquatic pathogen Streptococcus iniae. PMID:19762441
UFO: a web server for ultra-fast functional profiling of whole genome protein sequences. PMID:19725959
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. PMID:19720995
A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes. PMID:19680427
The case for biocentric microbiology. PMID:19653908
Evaluation of three automated genome annotations for Halorhabdus utahensis. PMID:19617911
Role of flagella in virulence of the coral pathogen Vibrio coralliilyticus. PMID:19592536
Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence. PMID:19564389
Gene order phylogeny and the evolution of methanogens. PMID:19562076
iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations. PMID:19555510
Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens. PMID:19515247
A flood of microbial genomes-do we need more? PMID:19513110
Origin of saxitoxin biosynthetic genes in cyanobacteria. PMID:19484122
Integron gene cassettes and degradation of compounds associated with industrial waste: the case of the Sydney tar ponds. PMID:19390587
DIYA: a bacterial annotation pipeline for any genomics lab. PMID:19254921
Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PMID:19197347
The Genome Reverse Compiler: an explorative annotation tool. PMID:19173744
Reconstruction of biochemical networks in microorganisms. PMID:19116616
Molecular diversity of a North Carolina wastewater treatment plant as revealed by pyrosequencing. PMID:19114525
Gene order phylogeny of the genus Prochlorococcus. PMID:19050756
MetaMine--a tool to detect and analyse gene patterns in their environmental context. PMID:18957118
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. PMID:18803844
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PMID:18725995
Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease. PMID:18716664
Streptococcus iniae M-like protein contributes to virulence in fish and is a target for live attenuated vaccine development. PMID:18665241
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