LncRNAs and PRC2: Coupled Partners in Embryonic Stem Cells.
PMID:34968226
3D genome alterations associated with dysregulated HOXA13 expression in high-risk T-lineage acute lymphoblastic leukemia.
PMID:34140506
Circulating Cell-Free DNA Combined to Magnetic Resonance Imaging for Early Detection of HCC in Patients with Liver Cirrhosis.
PMID:33572923
Targeted next-generation sequencing identifies the disruption of the SHANK3 and RYR2 genes in a patient carrying a de novo t(1;22)(q43;q13.3) associated with signs of Phelan-McDermid syndrome.
PMID:32536973
The Search for Molecular Markers in a Gene-Orphan Case Study of a Pediatric Spinal Cord Pilocytic Astrocytoma.
PMID:32108034
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods.
PMID:31639029
FusionScan: accurate prediction of fusion genes from RNA-Seq data.
PMID:31610622
Circulating DNA as prognostic biomarker in patients with advanced hepatocellular carcinoma: a translational exploratory study from the SORAMIC trial.
PMID:31570105
Comment on "A comprehensive overview and evaluation of circular RNA detection tools".
PMID:31150384
Regional perturbation of gene transcription is associated with intrachromosomal rearrangements and gene fusion transcripts in high grade ovarian cancer.
PMID:30837567
NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors.
PMID:30606103
De novo unbalanced translocations have a complex history/aetiology.
PMID:30276538
PITDB: a database of translated genomic elements.
PMID:30053269
Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells.
PMID:29385530
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes.
PMID:28053160
Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study.
PMID:28013235
ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions.
PMID:27899596
ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining.
PMID:27899563
RWCFusion: identifying phenotype-specific cancer driver gene fusions based on fusion pair random walk scoring method.
PMID:27506935
CoReCG: a comprehensive database of genes associated with colon-rectal cancer.
PMID:27114494
Discovering and understanding oncogenic gene fusions through data intensive computational approaches.
PMID:27105842
Evolutionary Insights into RNA trans-Splicing in Vertebrates.
PMID:26966239
Exon-centric regulation of ATM expression is population-dependent and amenable to antisense modification by pseudoexon targeting.
PMID:26732650
Proteogenomics from a bioinformatics angle: A growing field.
PMID:26670565
NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision.
PMID:26442529
Transcriptome Profiling of Pediatric Core Binding Factor AML.
PMID:26397705
FARE-CAFE: a database of functional and regulatory elements of cancer-associated fusion events.
PMID:26384373
Biogenesis, identification, and function of exonic circular RNAs.
PMID:26230526
An Efficient Method for Identifying Gene Fusions by Targeted RNA Sequencing from Fresh Frozen and FFPE Samples.
PMID:26132974
Recurrent BCAM-AKT2 fusion gene leads to a constitutively activated AKT2 fusion kinase in high-grade serous ovarian carcinoma.
PMID:25733895
The landscape and therapeutic relevance of cancer-associated transcript fusions.
PMID:25500544
ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts.
PMID:25414346
Onco-proteogenomics: cancer proteomics joins forces with genomics.
PMID:25357240
Transcription-mediated chimeric RNAs in prostate cancer: time to revisit old hypothesis?
PMID:25188740
Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer.
PMID:25183062
Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?
PMID:25053845
Identification of gene fusions from human lung cancer mass spectrometry data.
PMID:24564548
CNVannotator: a comprehensive annotation server for copy number variation in the human genome.
PMID:24244640
Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
PMID:24131564
Web-based visual analysis for high-throughput genomics.
PMID:23758618
FUSIM: a software tool for simulating fusion transcripts.
PMID:23323884
ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.
PMID:23143107
Gene Fusion Markup Language: a prototype for exchanging gene fusion data.
PMID:23072312
Novel domain combinations in proteins encoded by chimeric transcripts.
PMID:22689780
Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.
PMID:22588898
Spatial proximity and similarity of the epigenetic state of genome domains.
PMID:22496774
R-SAP: a multi-threading computational pipeline for the characterization of high-throughput RNA-sequencing data.
PMID:22287631
dbCRID: a database of chromosomal rearrangements in human diseases.
PMID:21051346