Other names: sctype_app
Fully-automated and ultra-fast cell-type identification using specific marker combinations from single-cell transcriptomic data.
transcriptomics cell biology biological rna sequence genotype and phenotype
The Swiss Portal for Immune Cell Analysis (SPICA) is a web resource dedicated to the exploration and analysis of single-cell RNA-seq data of immune cells.
SCPortalen is a single-cell database created to facilitate and enable researchers to access and explore published single-cell datasets. It integrates human and mouse single-cell transcriptomics datase ...
SHOGoiN Cell Database is a repository for accumulating and integrating diverse human cell information to support a wide range of cell research at the single-cell resolution. It is an extension of the ...
CellO (Cell Ontology-based classification) is a Python package for performing cell type classification of human RNA-seq data. CellO makes hierarchical predictions against the Cell Ontology. These clas ...
rPanglaoDB is an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database. A meta-analysis database for single cell RNA sequencing data. Search across datasets, stu ...
The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (e ...
A major update of the ruminant functional and evolutionary genomics database.
A curated and comprehensive resource of plant cell markers.
Cell types associated with placental structure and function. This Cell Type ontology builds on the Cell Ontology (CL) as well as the BRENDA Tissue and Enzyme Source Ontology (BTO) and was further deve ...
Query single-cell gene expression databases by entering a gene symbol or a list of genes or selecting a cell type of their interest. Gene query provides quantitative RNA expression of the gene of inte ...
Cell type specificity of genetic traits
The Cell Line Ontology (CLO) is a community-driven ontology that is developed to standardize and integrate cell line information and support computer-assisted reasoning. Thousands of cell lines have b ...
Human Antigen Receptor Consortium (huARdb) is a comprehensive database of single cell immune profiling and V(D)J T cell and B cell analysis, enhanced with advanced visualization of single-cell data.
A curated repository of cell types with multifaceted characterization.
Cell Bank/Stem Cell Bank is a nonprofit biological resource center, which includes two divisions named as cell bank and stem cell bank. It is affiliated to Shanghai Institute of Biochemistry and Cell ...
Sepsis single-cell whole gene expression database.
The Molecular Connections Cell Line Ontology models primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major do ...
The Brain Region and Cell Type terminology (BRCT) describes brain anatomy with a top-down granularity, from gross regions to cell types. This resource has been created for use in the IMI-funded AETION ...
A comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels.
A dedicated database of non-B cell derived immunoglobulin variable region. Non-B cell derived ImmunoGlobulin Variable region Database. Welcome to NBIGV, a database dedicated to organizing and charac ...