Minimal information about Adaptive Immune Receptor Repertoire
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Minimal information about Adaptive Immune Receptor Repertoire
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
MiAIRR
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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Minimal information about Adaptive Immune Receptor Repertoire
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
MiAIRR
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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Minimal information about Adaptive Immune Receptor Repertoire
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
MiAIRR
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Minimal information about Adaptive Immune Receptor Repertoire (MiAIRR) is a checklist of minimally required information that we recommend journals adopt, and that could form the requirements for submission to a public data repository. AIRR sequencing studies apply high-throughput sequencing technologies to profile B cell receptors (BCRs) and T cell receptors (TCRs). The standards were developed by the AIRR Community (http://airr-community.org) Minimal Standards Working Group.
Description
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Minimal information about Adaptive Immune Receptor Repertoire (MiAIRR) is a checklist of minimally required information that we recommend journals adopt, and that could form the requirements for submission to a public data repository. AIRR sequencing studies apply high-throughput sequencing technologies to profile B cell receptors (BCRs) and T cell receptors (TCRs). The standards were developed by the AIRR Community (http://airr-community.org) Minimal Standards Working Group.
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Webpage:
http://miairr.airr-community.orgWebpage
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http://miairr.airr-community.org
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
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Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
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Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
PMID: 29144493
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
PMID: 29144493
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
PubMed citations: 63.
63 articles citing: Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
Machine Learning Approaches to TCR Repertoire Analysis. PMID:35911778
Data Sharing and Reuse: A Method by the AIRR Community. PMID:35622339
Bulk gDNA Sequencing of Antibody Heavy-Chain Gene Rearrangements for Detection and Analysis of B-Cell Clone Distribution: A Method by the AIRR Community. PMID:35622334
Adaptive Immune Receptor Repertoire (AIRR) Community Guide to TR and IG Gene Annotation. PMID:35622332
AIRR Community Guide to Planning and Performing AIRR-Seq Experiments. PMID:35622331
Analysis of T-Cell Receptor Repertoire in Transplantation: Fingerprint of T Cell-mediated Alloresponse. PMID:35095851
Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome. PMID:35022065
Dual UMIs and Dual Barcodes With Minimal PCR Amplification Removes Artifacts and Acquires Accurate Antibody Repertoire. PMID:35003093
INDI-integrated nanobody database for immunoinformatics. PMID:34747487
Observed Antibody Space: A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences. PMID:34655133
Access to ultra-long IgG CDRH3 bovine antibody sequences using short read sequencing technology. PMID:34464839
Altered function and differentiation of age-associated B cells contribute to the female bias in lupus mice. PMID:34376664
When a virus lies in wait. PMID:34347587
High-throughput and single-cell T cell receptor sequencing technologies. PMID:34282327
Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling. PMID:34037521
Opportunities and Challenges in Democratizing Immunology Datasets. PMID:33936065
Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. PMID:33914028
T Cell Receptor Repertoires Acquired via Routine Pap Testing May Help Refine Cervical Cancer and Precancer Risk Estimates. PMID:33868241
Proinsulin-Reactive CD4 T Cells in the Islets of Type 1 Diabetes Organ Donors. PMID:33841327
The Future of Blood Testing Is the Immunome. PMID:33790897
The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons. PMID:33693395
A T cell repertoire timestamp is at the core of responsiveness to CTLA-4 blockade. PMID:33604527
TCR+/BCR+ dual-expressing cells and their associated public BCR clonotype are not enriched in type 1 diabetes. PMID:33545036
Alignment free identification of clones in B cell receptor repertoires. PMID:33330933
SARS-CoV-2 Epitopes Are Recognized by a Public and Diverse Repertoire of Human T Cell Receptors. PMID:33326767
Sex-Biased Aging Effects on Ig Somatic Hypermutation Targeting. PMID:33288546
A review of COVID-19 biomarkers and drug targets: resources and tools. PMID:33279954
ALDH4A1 is an atherosclerosis auto-antigen targeted by protective antibodies. PMID:33268892
The adaptive immune receptor repertoire community as a model for FAIR stewardship of big immunology data. PMID:33073065
Mining the Antibody Repertoire for Solutions to SARS-CoV-2. PMID:33031765
Maturation of the Human Immunoglobulin Heavy Chain Repertoire With Age. PMID:32849618
Developing an Unbiased Multiplex PCR System to Enrich the TRB Repertoire Toward Accurate Detection in Leukemia. PMID:32849555
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community. PMID:32838759
Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data. PMID:32574157
Landscape of variable domain of heavy-chain-only antibody repertoire from alpaca. PMID:32506493
Network Organization of Antibody Interactions in Sequence and Structure Space: the RADARS Model. PMID:32384800
Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences. PMID:31873728
Peripheral immune-based biomarkers in cancer immunotherapy: can we realize their predictive potential? PMID:31775882
The Immune Epitope Database and Analysis Resource Program 2003-2018: reflections and outlook. PMID:31761977
An overview of immunoinformatics approaches and databases linking T cell receptor repertoires to their antigen specificity. PMID:31741011
Computational approaches to therapeutic antibody design: established methods and emerging trends. PMID:31626279
A Framework for Annotation of Antigen Specificities in High-Throughput T-Cell Repertoire Sequencing Studies. PMID:31616409
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. PMID:31588507
Deep generative models for T cell receptor protein sequences. PMID:31487240
Looking for therapeutic antibodies in next-generation sequencing repositories. PMID:31216939
The expanding role of systems immunology in decoding the T cell receptor repertoire. PMID:31106281
Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming. PMID:30936866
Large-scale network analysis reveals the sequence space architecture of antibody repertoires. PMID:30899025
Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual. PMID:30876875
Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database. PMID:30515166
Predicting B cell receptor substitution profiles using public repertoire data. PMID:30332400
AIRR Community Standardized Representations for Annotated Immune Repertoires. PMID:30323809
ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data. PMID:30298069
Local Clonal Diversification and Dissemination of B Lymphocytes in the Human Bronchial Mucosa. PMID:30245687
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. PMID:30166985
ASAP - A Webserver for Immunoglobulin-Sequencing Analysis Pipeline. PMID:30105017
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. PMID:30012108
Computational Evaluation of B-Cell Clone Sizes in Bulk Populations. PMID:30008715
Synthetic Standards Combined With Error and Bias Correction Improve the Accuracy and Quantitative Resolution of Antibody Repertoire Sequencing in Human Naïve and Memory B Cells. PMID:29973938
A spectral clustering-based method for identifying clones from high-throughput B cell repertoire sequencing data. PMID:29949968
iReceptor: A platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories. PMID:29944754
VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements. PMID:29867956
Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires. PMID:29515569
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antibody
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
immune system
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
immunoglobulin complex
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
t cell receptor complex
metasource: Fairsharing.org
version: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
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antibody
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
immune system
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
immunoglobulin complex
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
t cell receptor complex
metasource: Fairsharing.orgversion: FAIRsharing.org: MiAIRR; Minimal information about Adaptive Immune Receptor Repertoire; DOI: https://doi.org/10.25504/FAIRsharing.31hec1; Last edited: May 1, 2020, 4:18 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
antibody immune system immunoglobulin complex sequencing t cell receptor complex
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