RTPrimerDB
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RTPrimerDB is a public database for primer and probe sequences used in real-time PCR assays employing popular chemistries (SYBR Green I, Taqman, Hybridisation Probes, Molecular Beacon) to prevent time-consuming primer design and experimental optimisation, and to introduce a certain level of uniformity and standardisation among different laboratories.
Description
More detailed information about this field from each metasource.
RTPrimerDB is a public database for primer and probe sequences used in real-time PCR assays employing popular chemistries (SYBR Green I, Taqman, Hybridisation Probes, Molecular Beacon) to prevent time-consuming primer design and experimental optimisation, and to introduce a certain level of uniformity and standardisation among different laboratories.
metasource: Fairsharing.orgversion: FAIRsharing.org: RTPrimerDB; RTPrimerDB; DOI: https://doi.org/10.25504/FAIRsharing.x16th8; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Webpage:
http://medgen.ugent.be/rtprimerdb/Webpage
More detailed information about this field from each metasource.
http://medgen.ugent.be/rtprimerdb/
metasource: Fairsharing.orgversion: FAIRsharing.org: RTPrimerDB; RTPrimerDB; DOI: https://doi.org/10.25504/FAIRsharing.x16th8; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
qPrimerDepot: a primer database for quantitative real time PCR
PMID: 17068075
metasource: Fairsharing.org
version: FAIRsharing.org: RTPrimerDB; RTPrimerDB; DOI: https://doi.org/10.25504/FAIRsharing.x16th8; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications
More detailed information about this field from each metasource.
qPrimerDepot: a primer database for quantitative real time PCR
PMID: 17068075
metasource: Fairsharing.org
version: FAIRsharing.org: RTPrimerDB; RTPrimerDB; DOI: https://doi.org/10.25504/FAIRsharing.x16th8; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
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qPrimerDepot: a primer database for quantitative real time PCR
PubMed citations: 96.
96 articles citing: qPrimerDepot: a primer database for quantitative real time PCR
Matrix Metalloproteinase 7 Expression and Apical Epithelial Defects in Atp8b1 Mutant Mouse Model of Pulmonary Fibrosis. PMID:35204783
AGE-Rich Bread Crust Extract Boosts Oxidative Stress Interception via Stimulation of the NRF2 Pathway. PMID:34836129
Photoreceptor Cell Calcium Dysregulation and Calpain Activation Promote Pathogenic Photoreceptor Oxidative Stress and Inflammation in Prodromal Diabetic Retinopathy. PMID:34214506
Probiotic Pediococcus acidilactici strain from tomato pickle displays anti-cancer activity and alleviates gut inflammation in-vitro. PMID:33442521
Vitamin C-squalene bioconjugate promotes epidermal thickening and collagen production in human skin. PMID:33037252
SON DNA-binding protein mediates macrophage autophagy and responses to intracellular infection. PMID:32484234
α-ketobutyrate links alterations in cystine metabolism to glucose oxidation in mtDNA mutant cells. PMID:32330654
RNA-protein correlation of liver toxicity markers in HepaRG cells. PMID:32194361
Targeting castration-resistant prostate cancer with androgen receptor antisense oligonucleotide therapy. PMID:31484823
Targeting the cell cycle in head and neck cancer by Chk1 inhibition: a novel concept of bimodal cell death. PMID:31209198
Gene expression and DNA methylation as mechanisms of disturbed metabolism in offspring after exposure to a prenatal HF diet. PMID:31064776
FGFR1 regulates trophectoderm development and facilitates blastocyst implantation. PMID:30552867
PCRdrive: the largest qPCR assay archive to date and endless potential for lab workflow revitalization. PMID:30466398
Aquaporins Alteration Profiles Revealed Different Actions of Senna, Sennosides, and Sennoside A in Diarrhea-Rats. PMID:30336596
WNT signaling memory is required for ACTIVIN to function as a morphogen in human gastruloids. PMID:30311909
Improved Tolerability of a Salmonella enterica Serovar Typhimurium Live-Attenuated Vaccine Strain Achieved by Balancing Inflammatory Potential with Immunogenicity. PMID:30249748
ChIPprimersDB: a public repository of verified qPCR primers for chromatin immunoprecipitation (ChIP). PMID:30202990
Characterization of Dendritic Cell-Derived Extracellular Vesicles During Dengue Virus Infection. PMID:30131785
Evaluation of biomaterial scaffold delivery of IL-33 as a localized immunomodulatory agent to support cell transplantation in adipose tissue. PMID:29869643
Inverse agonism of retinoic acid receptors directs epiblast cells into the paraxial mesoderm lineage. PMID:29807258
Distributed hepatocytes expressing telomerase repopulate the liver in homeostasis and injury. PMID:29618815
Bisecting N-Acetylglucosamine Structures Inhibit Hypoxia-Induced Epithelial-Mesenchymal Transition in Breast Cancer Cells. PMID:29593568
Evaluation of the role of downregulation of SNF5/INI1 core subunit of SWI/SNF complex in clear cell renal cell carcinoma development. PMID:29218250
Transcriptional and post-translational changes in the brain of mice deficient in cholesterol removal mediated by cytochrome P450 46A1 (CYP46A1). PMID:29073233
Culture in Glucose-Depleted Medium Supplemented with Fatty Acid and 3,3',5-Triiodo-l-Thyronine Facilitates Purification and Maturation of Human Pluripotent Stem Cell-Derived Cardiomyocytes. PMID:29067001
ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. PMID:29036693
qPrimerDB: a thermodynamics-based gene-specific qPCR primer database for 147 organisms. PMID:28977518
APOBEC3A Is Upregulated by Human Cytomegalovirus (HCMV) in the Maternal-Fetal Interface, Acting as an Innate Anti-HCMV Effector. PMID:28956761
Cholesterol-metabolizing enzyme cytochrome P450 46A1 as a pharmacologic target for Alzheimer's disease. PMID:28655608
Effects of exercise training on nitric oxide, blood pressure and antioxidant enzymes. PMID:28603344
CAMK2γ in intestinal epithelial cells modulates colitis-associated colorectal carcinogenesis via enhancing STAT3 activation. PMID:28319059
Bis(3,5-diiodo-2,4,6-trihydroxyphenyl)squaraine photodynamic therapy disrupts redox homeostasis and induce mitochondria-mediated apoptosis in human breast cancer cells. PMID:28169351
An Engineered Herpesvirus Activates Dendritic Cells and Induces Protective Immunity. PMID:28150813
Extraoral bitter taste receptors in health and disease. PMID:28053191
Alternative splicing of the OCC-1 gene generates three splice variants and a novel exonic microRNA, which regulate the Wnt signaling pathway. PMID:27986894
MRPrimerV: a database of PCR primers for RNA virus detection. PMID:27899620
Toll-like receptor 2 is increased in neurons in Parkinson's disease brain and may contribute to alpha-synuclein pathology. PMID:27888296
Retinal Hypercholesterolemia Triggers Cholesterol Accumulation and Esterification in Photoreceptor Cells. PMID:27514747
TNF-α augments RANKL-dependent intestinal M cell differentiation in enteroid cultures. PMID:27413168
Increased serum levels of interleukin-6 and von Willenbrand Factor in early phase of acute coronary syndrome in a young and multiethnic Malaysian population. PMID:27326052
Putative role of the H(+)/sucrose symporter SLC45A3 as an osmolyte transporter in the kidney. PMID:27228996
MRPrimerW: a tool for rapid design of valid high-quality primers for multiple target qPCR experiments. PMID:27154272
Constitutive expression of SMAR1 confers susceptibility to Mycobacterium tuberculosis infection in a transgenic mouse model. PMID:26831422
Increased Skin Tumor Incidence and Keratinocyte Hyper-Proliferation in a Mouse Model of Down Syndrome. PMID:26752700
Zinc transporter Slc39a14 regulates inflammatory signaling associated with hypertrophic adiposity. PMID:26646099
p(⁷⁰S⁶K¹) in the TORC1 pathway is essential for the differentiation of Th17 Cells, but not Th1, Th2, or Treg cells in mice. PMID:26514620
Role of STAT1 in Chlamydia-Induced Type-1 Interferon Production in Oviduct Epithelial Cells. PMID:26262558
A Tool Set for the Genome-Wide Analysis of Neurospora crassa by RT-PCR. PMID:26248984
MiR-191 Regulates Primary Human Fibroblast Proliferation and Directly Targets Multiple Oncogenes. PMID:25992613
Impact of Adenovirus E4-ORF3 Oligomerization and Protein Localization on Cellular Gene Expression. PMID:25984715
CaV1.2/CaV3.x channels mediate divergent vasomotor responses in human cerebral arteries. PMID:25918359
Differential control of CD4(+) T-cell subsets by the PD-1/PD-L1 axis in a mouse model of allergic asthma. PMID:25630305
Chemokine (C-C Motif) receptor 1 is required for efficient recruitment of neutrophils during respiratory infection with modified vaccinia virus Ankara. PMID:25008920
Quantitative proteomic analysis of host-virus interactions reveals a role for Golgi brefeldin A resistance factor 1 (GBF1) in dengue infection. PMID:24855065
PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data. PMID:24747190
Allergic airway inflammation by nasal inoculation of particulate matter (PM2.5) in NC/Nga mice. PMID:24671176
Suppression of antimicrobial peptide expression by ureaplasma species. PMID:24491573
Cognitive deficits and disruption of neurogenesis in a mouse model of apolipoprotein E4 domain interaction. PMID:24324264
Phenotypic and transcriptional fidelity of patient-derived colon cancer xenografts in immune-deficient mice. PMID:24278200
Inactivation of Tgfbr2 in Osterix-Cre expressing dental mesenchyme disrupts molar root formation. PMID:23933490
FlyPrimerBank: an online database for Drosophila melanogaster gene expression analysis and knockdown evaluation of RNAi reagents. PMID:23893746
Histone deacetylase inhibitors modulate miRNA and mRNA expression, block metaphase, and induce apoptosis in inflammatory breast cancer cells. PMID:23792638
Posttranscriptional regulation of PER1 underlies the oncogenic function of IREα. PMID:23752693
Expression, regulation and putative nutrient-sensing function of taste GPCRs in the heart. PMID:23696900
LGR5 is Expressed by Ewing Sarcoma and Potentiates Wnt/β-Catenin Signaling. PMID:23596566
Canonical Wnt/β-catenin signaling drives human schwann cell transformation, progression, and tumor maintenance. PMID:23535903
The Antitumor Peptide CIGB-552 Increases COMMD1 and Inhibits Growth of Human Lung Cancer Cells. PMID:23401744
PD-L2 modulates asthma severity by directly decreasing dendritic cell IL-12 production. PMID:23149662
The promoter methylation and expression of the O6-methylguanine-DNA methyltransferase gene in uterine sarcoma and carcinosarcoma. PMID:22970054
Workflows for microarray data processing in the Kepler environment. PMID:22594911
NYESO-1/LAGE-1s and PRAME are targets for antigen specific T cells in chondrosarcoma following treatment with 5-Aza-2-deoxycitabine. PMID:22384167
Inhibition of TANK binding kinase 1 by herpes simplex virus 1 facilitates productive infection. PMID:22171259
Lack of evidence for increased level of circulating urothelial cells in the peripheral blood after transurethral resection of bladder tumors. PMID:22160796
PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update. PMID:22086960
GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR. PMID:21917859
Methyl-binding domain protein 2-dependent proliferation and survival of breast cancer cells. PMID:21693597
Functional characterization of human Cd33+ and Cd11b+ myeloid-derived suppressor cell subsets induced from peripheral blood mononuclear cells co-cultured with a diverse set of human tumor cell lines. PMID:21658270
Breast implant-associated, ALK-negative, T-cell, anaplastic, large-cell lymphoma: establishment and characterization of a model cell line (TLBR-1) for this newly emerging clinical entity. PMID:21425149
Multicomponent folate-targeted magnetoliposomes: design, characterization, and cellular uptake. PMID:21419872
Modulation of constitutive androstane receptor (CAR) and pregnane X receptor (PXR) by 6-arylpyrrolo[2,1-d][1,5]benzothiazepine derivatives, ligands of peripheral benzodiazepine receptor (PBR). PMID:21315811
Interferon-γ links ultraviolet radiation to melanomagenesis in mice. PMID:21248750
Amplicon-dependent CCNE1 expression is critical for clonogenic survival after cisplatin treatment and is correlated with 20q11 gain in ovarian cancer. PMID:21103391
Recruitment of RelB to the Csf2 promoter enhances RelA-mediated transcription of granulocyte-macrophage colony-stimulating factor. PMID:21071440
Immune responses regulation following antitumor dendritic cell-based prophylactic, concurrent, and therapeutic vaccination. PMID:21042958
Characterization of cytokine-induced myeloid-derived suppressor cells from normal human peripheral blood mononuclear cells. PMID:20644162
Association between toll-like receptor expression and human papillomavirus type 16 persistence. PMID:20473890
Establishment and characterization of a novel head and neck squamous cell carcinoma cell line USC-HN1. PMID:20175927
PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification. PMID:19906719
p52-Independent nuclear translocation of RelB promotes LPS-induced attachment. PMID:19903458
Epigenetic silencing of host cell defense genes enhances intracellular survival of the rickettsial pathogen Anaplasma phagocytophilum. PMID:19543390
A comprehensive collection of experimentally validated primers for Polymerase Chain Reaction quantitation of murine transcript abundance. PMID:19108745
Allergen uptake, activation, and IL-23 production by pulmonary myeloid DCs drives airway hyperresponsiveness in asthma-susceptible mice. PMID:19060952
QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR. PMID:18976492
Diverse hematopoietic potentials of five human embryonic stem cell lines. PMID:18692044
Lentiviral vectors bearing the cardiac promoter of the Na+-Ca2+ exchanger report cardiogenic differentiation in stem cells. PMID:18388932
Expression of RHOGTPase regulators in human myometrium. PMID:18190708
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More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: RTPrimerDB; RTPrimerDB; DOI: https://doi.org/10.25504/FAIRsharing.x16th8; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Tags
More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: RTPrimerDB; RTPrimerDB; DOI: https://doi.org/10.25504/FAIRsharing.x16th8; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
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