Dot Bracket Notation (DBN) - Vienna Format
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Dot Bracket Notation (DBN) - Vienna Format
metasource: Fairsharing.org
version: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
DBN
metasource: Fairsharing.org
version: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
More detailed information about this field from each metasource.
Dot Bracket Notation (DBN) - Vienna Format
metasource: Fairsharing.orgversion: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
DBN
metasource: Fairsharing.orgversion: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
More detailed information about this field from each metasource.
Dot Bracket Notation (DBN) - Vienna Format
metasource: Fairsharing.orgversion: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
DBN
metasource: Fairsharing.orgversion: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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The bracket notation for RNA secondary structures Pseudo-knot free secondary structures can be represented in the space-efficient bracket notation, which is used throughout the Vienna RNA package.
Description
More detailed information about this field from each metasource.
The bracket notation for RNA secondary structures Pseudo-knot free secondary structures can be represented in the space-efficient bracket notation, which is used throughout the Vienna RNA package.
metasource: Fairsharing.orgversion: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Webpage:
http://rna.tbi.univie.ac.at/help.html#A6Webpage
More detailed information about this field from each metasource.
http://rna.tbi.univie.ac.at/help.html#A6
metasource: Fairsharing.orgversion: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
RNA secondary structure analysis using the Vienna RNA package
PMID: 18428716
metasource: Fairsharing.org
version: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
RNA secondary structure analysis using the Vienna RNA package
PMID: 18428716
metasource: Fairsharing.org
version: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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RNA secondary structure analysis using the Vienna RNA package
PubMed citations: 33.
33 articles citing: RNA secondary structure analysis using the Vienna RNA package
Genetic variation and microRNA targeting of A-to-I RNA editing fine tune human tissue transcriptomes. PMID:33685485
HMGA2 Antisense Long Non-coding RNAs as New Players in the Regulation of HMGA2 Expression and Pancreatic Cancer Promotion. PMID:32010621
MicroRNA dataset of normal and Nosema ceranae-infected midguts of Apis cerana cerana workers. PMID:31667281
Profiling the rainbow trout hepatic miRNAome under diet-induced hyperglycemia. PMID:31282806
The 5BSL3.2 Functional RNA Domain Connects Distant Regions in the Hepatitis C Virus Genome. PMID:29163393
An Algorithm for Template-Based Prediction of Secondary Structures of Individual RNA Sequences. PMID:29067038
Population and allelic variation of A-to-I RNA editing in human transcriptomes. PMID:28754146
Does eIF3 promote reinitiation after translation of short upstream ORFs also in mammalian cells? PMID:28745933
Identification of Conserved and Novel MicroRNAs in Blueberry. PMID:28713413
Identification and Characterization of Novel Small RNAs in Rickettsia prowazekii. PMID:27375581
Combining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfaces. PMID:27095200
Exosomes from bulk and stem cells from human prostate cancer have a differential microRNA content that contributes cooperatively over local and pre-metastatic niche. PMID:26675257
Fusion transcript loci share many genomic features with non-fusion loci. PMID:26626734
RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway. PMID:26170170
RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup. PMID:26001743
Overlapping local and long-range RNA-RNA interactions modulate dengue virus genome cyclization and replication. PMID:25589642
Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria. PMID:25217589
Unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette. PMID:24669202
RNA design rules from a massive open laboratory. PMID:24469816
Tuning gene expression with synthetic upstream open reading frames. PMID:23798422
Genome-wide patterns of codon bias are shaped by natural selection in the purple sea urchin, Strongylocentrotus purpuratus. PMID:23637123
CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction. PMID:23435231
Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1. PMID:22369183
Understanding the errors of SHAPE-directed RNA structure modeling. PMID:21842868
The dual use of RNA aptamer sequences for affinity purification and localization studies of RNAs and RNA-protein complexes. PMID:21431756
A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA. PMID:21239468
The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures. PMID:21193488
Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome. PMID:20959291
Evidence for large complex networks of plant short silencing RNAs. PMID:20360863
A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo. PMID:19880500
Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules. PMID:19767456
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice. PMID:19055717
Informatic resources for identifying and annotating structural RNA motifs. PMID:18979204
Tags:
Tags
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molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
ribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: DBN; Dot Bracket Notation (DBN) - Vienna Format; DOI: https://doi.org/10.25504/FAIRsharing.4xrzw1; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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