Naturally modified nucleosides in RNA
rna sequence
The RNA Modification Database contains information pertaining to naturally occurring RNA modifications. The database employs an easy-to-use, searchable interface for obtaining detailed data on the 109 ...
Modified nucleosides in small subunit rRNA
MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences ...
Human RNA-RNA and RNA-protein interactions
A database of 3D RNA fragments within known RNA structures
Database to integrate epitranscriptome sequencing data for exploring post-transcriptionally modifications of RNAs, as well as their relationships with microRNA binding events, disease-related SNPs and ...
All complete or nearly complete rRNA sequences
Yeast small nucleolar RNAs
5S ribosomal RNA is an integral component of the large subunit of all cytoplasmic and most organellar ribosomes. Its small size and association with ribosomal as well as non-ribosomal proteins made it ...
RBP-Var is a database of functional variants involved in regulation mediated by RNA-binding proteins. Human genome variants can change the RNA structure and affect RNA-protein interactions.
Database of RNA Editing
The Comparative RNA Web (CRW) Site disseminates information about RNA structure and evolution that has been determined using comparative sequence analysis. We present both raw (sequences, structure mo ...
The Editome Disease Knowledgebase (EDK) is an integrated knowledgebase of RNA editome-disease associations manually curated from published literature. It stores information on RNA editing events in mR ...
DNAmod is an open-source database (https://dnamod.hoffmanlab.org) that catalogues DNA modifications and provides a single source to learn about their properties. The database annotates the chemical pr ...
Locations of modified rRNA nucleotides within the 3D structure of the ribosome
Integrates information on RNA helicases. The database allows retrieval of comprehensive information on sequence, structure and on biochemical and cellular functions of all RNA helicases from the most ...
Database of RNA Base-Pair Structures
A Rigorously Annotated Database of A-to-I RNA editing
RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of databases representing a broa ...
CoDNaS-RNA is a database of the Conformational Diversity in the Native State of RNA molecules. Each entry in CoDNaS-RNA is a redundant collection of known structures of the same RNA molecule, which ca ...