RIKEN Arabidopsis Genome Encyclopedia II

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RIKEN Arabidopsis Genome Encyclopedia II

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RARGE II

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Other names: RARGE II

RARGE II provides basic information about the Arabidopsis genome, such as information related to cDNA sequences and transposon insertion mutants. To create it, publicly available information for a total of 66,209 Arabidopsis mutant lines was used, including loss-of-function (RATM and TARAPPER) and gain-of-function (AtFOX and OsFOX) lines, as well as phenotype data gained through the mapping of descriptions onto Plant Ontology (PO) and Phenotypic Quality Ontology (PATO) terms.

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RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary
PMID: 24272250

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• RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary PubMed citations: 13.

  13 articles citing: RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary

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  R2R3-MYBs in Durum Wheat: Genome-Wide Identification, Poaceae-Specific Clusters, Expression, and Regulatory Dynamics Under Abiotic Stresses. PMID:35795353

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  Genome Evolutionary Dynamics Meets Functional Genomics: A Case Story on the Identification of SLC25A44. PMID:34073512

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  Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators. PMID:33846597

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  A multilayered cross-species analysis of GRAS transcription factors uncovered their functional networks in plant adaptation to the environment. PMID:33842016

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  Identification of QTLs for Domestication-Related Traits in Zombi Pea [Vigna vexillata (L.) A. Rich], a Lost Crop of Africa. PMID:33193562

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  Proxies of CRISPR/Cas9 Activity To Aid in the Identification of Mutagenized Arabidopsis Plants. PMID:32291290

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  Candidate Domestication-Related Genes Revealed by Expression Quantitative Trait Loci Mapping of Narrow-Leafed Lupin (Lupinus angustifolius L.). PMID:31726789

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  Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth. PMID:31361386

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  Computational aspects underlying genome to phenome analysis in plants. PMID:30500991

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  Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes. PMID:28069893

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  In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae. PMID:26307970

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  MOROKOSHI: transcriptome database in Sorghum bicolor. PMID:25505007

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  Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes. PMID:25435546

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complementary dna

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genome

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genome annotation

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mutation

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transposable element

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complementary dna genome genome annotation mutation transposable element