Plant Experimental Condition Ontology
Names
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Plant Experimental Condition Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
PECO
metasource: Fairsharing.org
version: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
Plant Experimental Conditions Ontology
metasource: Biontology / Bioportal
version: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
Names
More detailed information about this field from each metasource.
Plant Experimental Condition Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
PECO
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
Plant Experimental Conditions Ontology
metasource: Biontology / Bioportalversion: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
Other names: PECO, Plant Experimental Conditions Ontology
Names
More detailed information about this field from each metasource.
Plant Experimental Condition Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
PECO
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
metasource: Biontology / Bioportal
version: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
Plant Experimental Conditions Ontology
metasource: Biontology / Bioportalversion: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
PECO is a structured, controlled vocabulary for the representation of plant experimental conditions. It describes the treatments, growing conditions, and/or study types used in various types of plant biology experiments.
Description
More detailed information about this field from each metasource.
PECO is a structured, controlled vocabulary for the representation of plant experimental conditions. It describes the treatments, growing conditions, and/or study types used in various types of plant biology experiments.
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The Plant Experimental Conditions Ontology describes the treatments, growing conditions, and/or study types used in plant biology experiments. The subjects of the studies may also include in vitro plant structures (PO:0000004). A plant treatment is the most specific,and may be a component of a plant growing condition, and the plant study type. The broadest classes are the plant study types where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own and it may also involve instances of biotic and abiotic treatments and different growing conditions.
metasource: Biontology / Bioportalversion: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
Webpage:
https://github.com/Planteome/plant-experimental-conditions-ontologyWebpage
More detailed information about this field from each metasource.
https://github.com/Planteome/plant-experimental-conditions-ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://browser.planteome.org/amigo/term/EO:0007359
metasource: Biontology / Bioportalversion: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
PMID: 29186578
metasource: Fairsharing.org
version: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://planteome.org/pub
metasource: Biontology / Bioportal
version: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
Publications
More detailed information about this field from each metasource.
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
PMID: 29186578
metasource: Fairsharing.org
version: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
http://planteome.org/pub
metasource: Biontology / Bioportalversion: releases/2020-08-21 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PECO
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The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
PubMed citations: 44.
44 articles citing: The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
First Plant Cell Atlas symposium report. PMID:35774620
Phenotypic Variation and the Impact of Admixture in the Oryza rufipogon Species Complex (ORSC). PMID:35769295
Alleviating Environmental Health Disparities Through Community Science and Data Integration. PMID:35664667
Data standardization of plant-pollinator interactions. PMID:35639882
GrainGenes: a data-rich repository for small grains genetics and genomics. PMID:35616118
Genetic and Genomic Resources for Soybean Breeding Research. PMID:35567182
DIVIS: a semantic DIstance to improve the VISualisation of heterogeneous phenotypic datasets. PMID:35379292
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. PMID:35037224
CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research. PMID:34961276
Integrating Genomic and Phenomic Approaches to Support Plant Genetic Resources Conservation and Use. PMID:34834625
PlantGSAD: a comprehensive gene set annotation database for plant species. PMID:34534340
Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana. PMID:34381973
Scaling up high-throughput phenotyping for abiotic stress selection in the field. PMID:34076731
Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics. PMID:33852055
Editorial: Phenotyping; From Plant, to Data, to Impact and Highlights of the International Plant Phenotyping Symposium - IPPS 2018. PMID:33343612
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. PMID:33319712
Hierarchical Canonical Correlation Analysis Reveals Phenotype, Genotype, and Geoclimate Associations in Plants. PMID:33313545
Computing on Phenotypic Descriptions for Candidate Gene Discovery and Crop Improvement. PMID:33313544
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS. PMID:33313522
Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. PMID:33205138
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. PMID:33170273
Enabling a fast annotation process with the Table2Annotation tool. PMID:32634873
WTO, an ontology for wheat traits and phenotypes in scientific publications. PMID:32634868
A Physio-Morphological Trait-Based Approach for Breeding Drought Tolerant Wheat. PMID:32582249
Phenomics-based GWAS analysis reveals the genetic architecture for drought resistance in cotton. PMID:32558152
Enabling reusability of plant phenomic datasets with MIAPPE 1.1. PMID:32171029
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees. PMID:31892954
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. PMID:31680153
MBKbase for rice: an integrated omics knowledgebase for molecular breeding in rice. PMID:31624841
GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. PMID:31566222
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment. PMID:31293610
The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species. PMID:31214208
Small RNA-seq reveals novel regulatory components for apomixis in Paspalum notatum. PMID:31195966
Review: New sensors and data-driven approaches-A path to next generation phenomics. PMID:31003608
BrAPI-an application programming interface for plant breeding applications. PMID:30903186
Involving community in genes and pathway curation. PMID:30649295
Computer vision-based phenotyping for improvement of plant productivity: a machine learning perspective. PMID:30520975
Computational aspects underlying genome to phenome analysis in plants. PMID:30500991
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PMID:30500839
15 years of GDR: New data and functionality in the Genome Database for Rosaceae. PMID:30357347
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679
Growing and cultivating the forest genomics database, TreeGenes. PMID:30239664
Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System. PMID:30152011 - http://planteome.org/pub
Tags:
Tags
More detailed information about this field from each metasource.
experimental measurement
metasource: Fairsharing.org
version: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
experimentally determined
metasource: Fairsharing.org
version: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
study design
metasource: Fairsharing.org
version: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
experimental measurement
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
experimentally determined
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
study design
metasource: Fairsharing.orgversion: FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
experimental measurement experimentally determined study design
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