Plant Trait Ontology
Names
More detailed information about this field from each metasource.
Plant Trait Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: April 2022 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PTO
TO
metasource: Fairsharing.org
version: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
PTO
metasource: Biontology / Bioportal
version: April 2022 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PTO
Names
More detailed information about this field from each metasource.
Plant Trait Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: April 2022 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PTO
TO
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
PTO
metasource: Biontology / Bioportalversion: April 2022 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PTO
Names
More detailed information about this field from each metasource.
Plant Trait Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: April 2022 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PTO
TO
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
PTO
metasource: Biontology / Bioportalversion: April 2022 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PTO
A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant part. The TO is part of the Planteome Project.
Description
More detailed information about this field from each metasource.
A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant part. The TO is part of the Planteome Project.
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant part.
metasource: Biontology / Bioportalversion: April 2022 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PTO
Webpage:
http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tabWebpage
More detailed information about this field from each metasource.
http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://www.planteome.org
metasource: Biontology / Bioportalversion: April 2022 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/PTO
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
PMID: 29186578
metasource: Fairsharing.org
version: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
PMID: 29186578
metasource: Fairsharing.org
version: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
-
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
PubMed citations: 44.
44 articles citing: The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
First Plant Cell Atlas symposium report. PMID:35774620
Phenotypic Variation and the Impact of Admixture in the Oryza rufipogon Species Complex (ORSC). PMID:35769295
Alleviating Environmental Health Disparities Through Community Science and Data Integration. PMID:35664667
Data standardization of plant-pollinator interactions. PMID:35639882
GrainGenes: a data-rich repository for small grains genetics and genomics. PMID:35616118
Genetic and Genomic Resources for Soybean Breeding Research. PMID:35567182
DIVIS: a semantic DIstance to improve the VISualisation of heterogeneous phenotypic datasets. PMID:35379292
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. PMID:35037224
CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research. PMID:34961276
Integrating Genomic and Phenomic Approaches to Support Plant Genetic Resources Conservation and Use. PMID:34834625
PlantGSAD: a comprehensive gene set annotation database for plant species. PMID:34534340
Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana. PMID:34381973
Scaling up high-throughput phenotyping for abiotic stress selection in the field. PMID:34076731
Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics. PMID:33852055
Editorial: Phenotyping; From Plant, to Data, to Impact and Highlights of the International Plant Phenotyping Symposium - IPPS 2018. PMID:33343612
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. PMID:33319712
Hierarchical Canonical Correlation Analysis Reveals Phenotype, Genotype, and Geoclimate Associations in Plants. PMID:33313545
Computing on Phenotypic Descriptions for Candidate Gene Discovery and Crop Improvement. PMID:33313544
Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS. PMID:33313522
Transforming the study of organisms: Phenomic data models and knowledge bases. PMID:33232313
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. PMID:33205138
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. PMID:33170273
Enabling a fast annotation process with the Table2Annotation tool. PMID:32634873
WTO, an ontology for wheat traits and phenotypes in scientific publications. PMID:32634868
A Physio-Morphological Trait-Based Approach for Breeding Drought Tolerant Wheat. PMID:32582249
Phenomics-based GWAS analysis reveals the genetic architecture for drought resistance in cotton. PMID:32558152
Enabling reusability of plant phenomic datasets with MIAPPE 1.1. PMID:32171029
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees. PMID:31892954
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. PMID:31680153
MBKbase for rice: an integrated omics knowledgebase for molecular breeding in rice. PMID:31624841
GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. PMID:31566222
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment. PMID:31293610
The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species. PMID:31214208
Small RNA-seq reveals novel regulatory components for apomixis in Paspalum notatum. PMID:31195966
Review: New sensors and data-driven approaches-A path to next generation phenomics. PMID:31003608
BrAPI-an application programming interface for plant breeding applications. PMID:30903186
Involving community in genes and pathway curation. PMID:30649295
Computer vision-based phenotyping for improvement of plant productivity: a machine learning perspective. PMID:30520975
Computational aspects underlying genome to phenome analysis in plants. PMID:30500991
Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PMID:30500839
15 years of GDR: New data and functionality in the Genome Database for Rosaceae. PMID:30357347
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679
Growing and cultivating the forest genomics database, TreeGenes. PMID:30239664
Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System. PMID:30152011
Tags:
Tags
More detailed information about this field from each metasource.
life cycle
metasource: Fairsharing.org
version: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
life cycle
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: TO; Plant Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.w69t6r; Last edited: Jan. 29, 2020, 10:39 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
life cycle phenotype structure
Need help integrating and/or managing biomedical data?