Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments
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Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MISFISHIE
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MISFISHIE
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MISFISHIE
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MISFISHIE is the Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments. This specification details the minimum information that should be provided when publishing, making public, or exchanging results from visual interpretation-based tissue gene expression localization experiments such as in situ hybridization, immunohistochemistry, reporter construct genetic experiments (GFP/green fluorescent protein, β-galactosidase), etc. Compliance to this standard is expected to provide researchers at other labs enough information to reproduce the experiment and/or to fully evaluate the data upon which results are based.
Description
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MISFISHIE is the Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments. This specification details the minimum information that should be provided when publishing, making public, or exchanging results from visual interpretation-based tissue gene expression localization experiments such as in situ hybridization, immunohistochemistry, reporter construct genetic experiments (GFP/green fluorescent protein, β-galactosidase), etc. Compliance to this standard is expected to provide researchers at other labs enough information to reproduce the experiment and/or to fully evaluate the data upon which results are based.
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://mged.sourceforge.net/misfishie/Webpage
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http://mged.sourceforge.net/misfishie/
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
PMID: 18327244
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE)
PMID: 16901227
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
PMID: 18327244
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE)
PMID: 16901227
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
PubMed citations: 54.
54 articles citing: Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
Minimum information guideline for spectrophotometric and fluorometric methods to assess biofilm formation in microplates. PMID:33447797
Best Practices for Making Reproducible Biochemical Models. PMID:32853539
Abnormal histology in testis from prepubertal boys with monorchidism. PMID:32782807
Biomarkers of Acute Lung Injury The Individualized Approach: for Phenotyping, Risk Stratification and Treatment Surveillance. PMID:31382587
If this is true, what does it imply? How end-user antibody validation facilitates insights into biology and disease. PMID:30775245
Micropublication: incentivizing community curation and placing unpublished data into the public domain. PMID:29688367
Use of multicolor fluorescence in situ hybridization to detect deletions in clinical tissue sections. PMID:29339834
Evaluation of fluorescence in situ hybridization techniques to study long non-coding RNA expression in cultured cells. PMID:29059327
Reproducibility of biomedical research - The importance of editorial vigilance. PMID:28331813
Quantitative validation of anti-PTBP1 antibody for diagnostic neuropathology use: Image analysis approach. PMID:28024117
The reproducibility of biomedical research: Sleepers awake! PMID:27896142
Validation of biomarkers to predict response to immunotherapy in cancer: Volume I - pre-analytical and analytical validation. PMID:27895917
Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity. PMID:27494557
Prognostic value of Ki67 in localized prostate carcinoma: a multi-institutional study of >1000 prostatectomies. PMID:27136741
OpenTein: a database of digital whole-slide images of stem cell-derived teratomas. PMID:26496950
ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. PMID:26420834
Recommendations for reporting histopathology studies: a proposal. PMID:25846513
Unvalidated antibodies and misleading results. PMID:25086631
Relation of completeness of reporting of health research to journals' endorsement of reporting guidelines: systematic review. PMID:24965222
Prognostic biomarkers: an introduction. PMID:24562304
Antibody validation of immunohistochemistry for biomarker discovery: recommendations of a consortium of academic and pharmaceutical based histopathology researchers. PMID:24525140
Methodological requirements for valid tissue-based biomarker studies that can be used in clinical practice. PMID:24487786
Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces. PMID:24478124
Biomarkers in autism spectrum disorder: the old and the new. PMID:24096533
Purification of mitochondrial proteins HSP60 and ATP synthase from ascidian eggs: implications for antibody specificity. PMID:23326373
Overview of DNA microarrays: types, applications, and their future. PMID:23288464
Why your new cancer biomarker may never work: recurrent patterns and remarkable diversity in biomarker failures. PMID:23172309
DIPSBC--data integration platform for systems biology collaborations. PMID:22568834
Minimum Information about a Genotyping Experiment (MIGEN). PMID:22180825
Approaches for the study of cancer: towards the integration of genomics, proteomics and metabolomics. PMID:21865133
A comparative gene expression database for invertebrates. PMID:21861937
Channeling the data deluge. PMID:21623351
Towards interoperable reporting standards for omics data: hopes and hurdles. PMID:21347181
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. PMID:21304730
The HUDSEN Atlas: a three-dimensional (3D) spatial framework for studying gene expression in the developing human brain. PMID:20979583
The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. PMID:20647237
Minimum information about a protein affinity reagent (MIAPAR). PMID:20622827
Antibody validation. PMID:20359301
Prognostic and predictive biomarkers in resected colon cancer: current status and future perspectives for integrating genomics into biomarker discovery. PMID:20350999
Analytic variability in immunohistochemistry biomarker studies. PMID:20332259
iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis. PMID:19941647
More than a decade of developmental gene expression atlases: where are we now? PMID:19822576
EMAGE mouse embryo spatial gene expression database: 2010 update. PMID:19767607
Towards large-scale sample annotation in gene expression repositories. PMID:19761579
MIMAS 3.0 is a Multiomics Information Management and Annotation System. PMID:19450266
Mostly, your results matter to others. PMID:19174831
Suitability of muscarinic acetylcholine receptor antibodies for immunohistochemistry evaluated on tissue sections of receptor gene-deficient mice. PMID:18974978
Co-regulation analysis of closely linked genes identifies a highly recurrent gain on chromosome 17q25.3 in prostate cancer. PMID:18973659
Big data: The future of biocuration. PMID:18769432
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. PMID:18688244
Quality control in molecular immunohistochemistry. PMID:18648842
Minimal information: an urgent need to assess the functional reliability of recombinant proteins used in biological experiments. PMID:18647423
Correlation of mRNA and protein levels: cell type-specific gene expression of cluster designation antigens in the prostate. PMID:18501003
The urologic epithelial stem cell database (UESC) - a web tool for cell type-specific gene expression and immunohistochemistry images of the prostate and bladder. PMID:18072977 -
Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE)
PubMed citations: 9.
9 articles citing: Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE)
Real-World Synthetic Biology: Is It Founded on an Engineering Approach, and Should It Be? PMID:30621107
Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity. PMID:27494557
A comparative gene expression database for invertebrates. PMID:21861937
FlyTED: the Drosophila Testis Gene Expression Database. PMID:19934263
MIFlowCyt: the minimum information about a Flow Cytometry Experiment. PMID:18752282
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). PMID:18327244
4DXpress: a database for cross-species expression pattern comparisons. PMID:17916571
Roles for the stem cell associated intermediate filament Nestin in prostate cancer migration and metastasis. PMID:17909025
TAMEE: data management and analysis for tissue microarrays. PMID:17343750
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antibody
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
cellular localization
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
evidence
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
fluorescence
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
immunohistochemistry
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
in situ hybridization
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
intensity
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
whole mount tissue
metasource: Fairsharing.org
version: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
antibody
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
cellular localization
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
evidence
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
fluorescence
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
immunohistochemistry
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
in situ hybridization
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
intensity
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
ribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
whole mount tissue
metasource: Fairsharing.orgversion: FAIRsharing.org: MISFISHIE; Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments; DOI: https://doi.org/10.25504/FAIRsharing.ht22t4; Last edited: Jan. 8, 2019, 1:29 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
antibody cellular localization evidence fluorescence gene expression immunohistochemistry in situ hybridization intensity rna whole mount tissue
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