Minimum Information About an RNAi Experiment Tabular
Names
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Minimum Information About an RNAi Experiment Tabular
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIARE-TAB
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information About an RNAi Experiment Tabular
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIARE-TAB
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Minimum Information About an RNAi Experiment Tabular
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIARE-TAB
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Minimum Information About an RNAi Experiment Tabular (MIARE) is a set of reporting guidelines that describes the minimum information that should be reported about an RNAi experiment to enable the unambiguous interpretation and reproduction of the results. MIARE forms part of a larger effort to develop RNAi data standards that include a data model, data exchange format, controlled vocabulary and supporting software tools.
Description
More detailed information about this field from each metasource.
Minimum Information About an RNAi Experiment Tabular (MIARE) is a set of reporting guidelines that describes the minimum information that should be reported about an RNAi experiment to enable the unambiguous interpretation and reproduction of the results. MIARE forms part of a larger effort to develop RNAi data standards that include a data model, data exchange format, controlled vocabulary and supporting software tools.
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://miare.sourceforge.net/HomePageWebpage
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http://miare.sourceforge.net/HomePage
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
A genome-wide RNAi screen for modifiers of the circadian clock in human cells
PMID: 19765810
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Standards for systems biology
PMID: 16847461
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
A genome-wide RNAi screen for modifiers of the circadian clock in human cells
PMID: 19765810
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Standards for systems biology
PMID: 16847461
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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A genome-wide RNAi screen for modifiers of the circadian clock in human cells
PubMed citations: 208.
208 articles citing: A genome-wide RNAi screen for modifiers of the circadian clock in human cells
GIpred: a computational tool for prediction of GIGANTEA proteins using machine learning algorithm. PMID:35221569
Circadian Synchrony: Sleep, Nutrition, and Physical Activity. PMID:35156088
NF-κB modifies the mammalian circadian clock through interaction with the core clock protein BMAL1. PMID:34807912
An hourglass mechanism controls torpor bout length in hibernating garden dormice. PMID:34762135
Cut the noise or couple up: Coordinating circadian and synthetic clocks. PMID:34568785
Structure-based design and classifications of small molecules regulating the circadian rhythm period. PMID:34531414
Circadian regulation of cardiac metabolism. PMID:34338224
Intercellular coupling between peripheral circadian oscillators by TGF-β signaling. PMID:34301601
Clock-Modulating Activities of the Anti-Arrhythmic Drug Moricizine. PMID:34206497
Attenuated SIRT1 Activity Leads to PER2 Cytoplasmic Localization and Dampens the Amplitude of Bmal1 Promoter-Driven Circadian Oscillation. PMID:34108855
Natural antisense transcript of Period2, Per2AS, regulates the amplitude of the mouse circadian clock. PMID:34016691
Identification of PCBP1 as a Novel Modulator of Mammalian Circadian Clock. PMID:33841513
Precision medicine for mood disorders: objective assessment, risk prediction, pharmacogenomics, and repurposed drugs. PMID:33828235
Sirtuins-Mediated System-Level Regulation of Mammalian Tissues at the Interface between Metabolism and Cell Cycle: A Systematic Review. PMID:33806509
A Global Search for novel Transcription Factors impacting the Neurospora crassa Circadian Clock. PMID:33792687
Temporal Dynamic Methods for Bulk RNA-Seq Time Series Data. PMID:33673721
Clock at the Core of Cancer Development. PMID:33672910
Cellular Senescence Triggers Altered Circadian Clocks With a Prolonged Period and Delayed Phases. PMID:33568972
High-throughput measurement of fibroblast rhythms reveals genetic heritability of circadian phenotypes in diversity outbred mice and their founder strains. PMID:33510298
A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms. PMID:33443164
Cisplatin's dual-effect on the circadian clock triggers proliferation and apoptosis. PMID:33364523
Genome-wide correlation analysis to identify amplitude regulators of circadian transcriptome output. PMID:33318596
Serum factor(s) from lung adenocarcinoma patients regulates the molecular clock expression. PMID:33221997
Peroxisome Proliferator-Activated Receptors as Molecular Links between Caloric Restriction and Circadian Rhythm. PMID:33198317
Phosphatase of Regenerating Liver-1 Selectively Times Circadian Behavior in Darkness via Function in PDF Neurons and Dephosphorylation of TIMELESS. PMID:33157022
Heritable gene expression variability and stochasticity govern clonal heterogeneity in circadian period. PMID:32745129
Tracking leukemic T-cell transcriptional dynamics in vivo with a blood-based reporter assay. PMID:32710494
Vulnerability to helpless behavior is regulated by the circadian clock component CRYPTOCHROME in the mouse nucleus accumbens. PMID:32487727
Post-translational Modifications are Required for Circadian Clock Regulation in Vertebrates. PMID:32476990
Chemical modulation of circadian rhythms and assessment of cellular behavior via indirubin and derivatives. PMID:32475398
A Systems Biology Approach Identifies Hidden Regulatory Connections Between the Circadian and Cell-Cycle Checkpoints. PMID:32372973
Isoform-selective regulation of mammalian cryptochromes. PMID:32231341
Systems Level Understanding of Circadian Integration with Cell Physiology. PMID:32061938
Orchestration of Circadian Timing by Macromolecular Protein Assemblies. PMID:31945377
12-h clock regulation of genetic information flow by XBP1s. PMID:31935211
Phenotypic proteomic profiling identifies a landscape of targets for circadian clock-modulating compounds. PMID:31792063
RNA Splicing Factor Mutations That Cause Retinitis Pigmentosa Result in Circadian Dysregulation. PMID:31726916
The E3 Ligases Spsb1 and Spsb4 Regulate RevErbα Degradation and Circadian Period. PMID:31607207
At the Interface of Lifestyle, Behavior, and Circadian Rhythms: Metabolic Implications. PMID:31555652
The eIF2α Kinase GCN2 Modulates Period and Rhythmicity of the Circadian Clock by Translational Control of Atf4. PMID:31522764
Comparative metabolomics of MCF-7 breast cancer cells using different extraction solvents assessed by mass spectroscopy. PMID:31511569
Identification of pathways that regulate circadian rhythms using a larval zebrafish small molecule screen. PMID:31455847
The NRON complex controls circadian clock function through regulated PER and CRY nuclear translocation. PMID:31417156
Angptl8 mediates food-driven resetting of hepatic circadian clock in mice. PMID:31388006
Effects of BMAL1 Manipulation on the Brain's Master Circadian Clock and Behavior. PMID:31249486
The importance of determining circadian parameters in pharmacological studies. PMID:31099023
A Robust Model for Circadian Redox Oscillations. PMID:31086108
G1/S cell cycle regulators mediate effects of circadian dysregulation on tumor growth and provide targets for timed anticancer treatment. PMID:31039152
Insulin/IGF-1 Drives PERIOD Synthesis to Entrain Circadian Rhythms with Feeding Time. PMID:31030999
Preservation of circadian rhythms by the protein folding chaperone, BiP. PMID:30888851
GPR158 in the Visual System: Homeostatic Role in Regulation of Intraocular Pressure. PMID:30855200
Cell-based screen identifies a new potent and highly selective CK2 inhibitor for modulation of circadian rhythms and cancer cell growth. PMID:30746467
Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms. PMID:30696823
Streamlined procedure for gene knockouts using all-in-one adenoviral CRISPR-Cas9. PMID:30670765
Nuclear receptor HNF4A transrepresses CLOCK:BMAL1 and modulates tissue-specific circadian networks. PMID:30530698
Spliceosome factors target timeless (tim) mRNA to control clock protein accumulation and circadian behavior in Drosophila. PMID:30516472
Requirement for NF-κB in maintenance of molecular and behavioral circadian rhythms in mice. PMID:30366905
Computational and experimental insights into the circadian effects of SIRT1. PMID:30348778
mTOR Signaling, Translational Control, and the Circadian Clock. PMID:30250482
Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability. PMID:30120083
Role of Cryptochrome-1 and Cryptochrome-2 in Aldosterone-Producing Adenomas and Adrenocortical Cells. PMID:29874863
Acid Suspends the Circadian Clock in Hypoxia through Inhibition of mTOR. PMID:29861175
Clocking In Time to Gate Memory Processes: The Circadian Clock Is Part of the Ins and Outs of Memory. PMID:29849561
mTOR signaling regulates central and peripheral circadian clock function. PMID:29750810
Identification of circadian clock modulators from existing drugs. PMID:29666146
The non-classical nuclear import carrier Transportin 1 modulates circadian rhythms through its effect on PER1 nuclear localization. PMID:29377895
Transcriptomic changes following valproic acid treatment promote neurogenesis and minimize secondary brain injury. PMID:29251707
The Ink4a/Arf locus operates as a regulator of the circadian clock modulating RAS activity. PMID:29216180
Ticking time bombs: connections between circadian clocks and cancer. PMID:29152229
Stability of Wake-Sleep Cycles Requires Robust Degradation of the PERIOD Protein. PMID:29103939
Genetic Association of the PERIOD3 (Per3) Clock Gene with Bipolar Disorder. PMID:29042894
Design Principles of Phosphorylation-Dependent Timekeeping in Eukaryotic Circadian Clocks. PMID:29038116
In Vitro Bioluminescence Assay to Characterize Circadian Rhythm in Mammary Epithelial Cells. PMID:28994762
The genomic landscape of human cellular circadian variation points to a novel role for the signalosome. PMID:28869038
Circadian Clock Model Supports Molecular Link Between PER3 and Human Anxiety. PMID:28860482
Age-dependent motor dysfunction due to neuron-specific disruption of stress-activated protein kinase MKK7. PMID:28779160
PRL2 links magnesium flux and sex-dependent circadian metabolic rhythms. PMID:28679948
A systems theoretic approach to analysis and control of mammalian circadian dynamics. PMID:28496287
Cell-intrinsic, Bmal1-dependent Circadian Regulation of Temozolomide Sensitivity in Glioblastoma. PMID:28470120
Akt1 Controls the Timing and Amplitude of Vascular Circadian Gene Expression. PMID:28452287
Genetic background-dependent effects of murine micro RNAs on circadian clock function. PMID:28448626
Mutation of the Human Circadian Clock Gene CRY1 in Familial Delayed Sleep Phase Disorder. PMID:28388406
Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism. PMID:28380384
Systems Chronotherapeutics. PMID:28351863
PubChem BioAssay: A Decade's Development toward Open High-Throughput Screening Data Sharing. PMID:28346087
Correspondence: Reply to 'Oncogenic MYC persistently upregulates the molecular clock component REV-ERBα'. PMID:28332490
[Research advances in circadian rhythm of epileptic seizures]. PMID:28100336
Daily rhythmicity of clock gene transcript levels in fast and slow muscle fibers from Chinese perch (Siniperca chuatsi). PMID:27931190
The Local Edge Machine: inference of dynamic models of gene regulation. PMID:27760556
Phosphorylation Regulating the Ratio of Intracellular CRY1 Protein Determines the Circadian Period. PMID:27721804
Parallel reverse genetic screening in mutant human cells using transcriptomics. PMID:27482057
Circadian Amplitude Regulation via FBXW7-Targeted REV-ERBα Degradation. PMID:27238018
Mood, stress and longevity: convergence on ANK3. PMID:27217151
Ageing in relation to skeletal muscle dysfunction: redox homoeostasis to regulation of gene expression. PMID:27215643
Endotoxin Disrupts Circadian Rhythms in Macrophages via Reactive Oxygen Species. PMID:27168152
Daily magnesium fluxes regulate cellular timekeeping and energy balance. PMID:27074515
Towards understanding and predicting suicidality in women: biomarkers and clinical risk assessment. PMID:27046645
Mechanists Must be Holists Too! Perspectives from Circadian Biology. PMID:26966017
Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank. PMID:26955885
Lack of association between cluster headache and PER3 clock gene polymorphism. PMID:26922944
The transcriptomic basis of tissue- and nutrition-dependent sexual dimorphism in the beetle Onthophagus taurus. PMID:26904187
USP2-45 Is a Circadian Clock Output Effector Regulating Calcium Absorption at the Post-Translational Level. PMID:26756164
Pituitary tumor transforming gene PTTG2 induces psoriasis by regulating vimentin and E-cadherin expression. PMID:26617803
Coactivator-Dependent Oscillation of Chromatin Accessibility Dictates Circadian Gene Amplitude via REV-ERB Loading. PMID:26611104
Quantifying Stochastic Noise in Cultured Circadian Reporter Cells. PMID:26588000
BioGPS: building your own mash-up of gene annotations and expression profiles. PMID:26578587
Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. PMID:26468131
Maternal Ube3a Loss Disrupts Sleep Homeostasis But Leaves Circadian Rhythmicity Largely Intact. PMID:26446213
Ubiquitin ligase Siah2 regulates RevErbα degradation and the mammalian circadian clock. PMID:26392558
Circadian Rhythms and Mood Disorders: Are the Phenomena and Mechanisms Causally Related? PMID:26379559
Histone monoubiquitination by Clock-Bmal1 complex marks Per1 and Per2 genes for circadian feedback. PMID:26323038
KPNB1 mediates PER/CRY nuclear translocation and circadian clock function. PMID:26319354
Circadian systems biology: When time matters. PMID:26288701
The Regulatory Factor ZFHX3 Modifies Circadian Function in SCN via an AT Motif-Driven Axis. PMID:26232227
Commentary: Targeting LDH enzymes with a stiripentol analog to treat epilepsy. PMID:26217188
Circadian redox oscillations and metabolism. PMID:26113283
The Circadian Protein BMAL1 Regulates Translation in Response to S6K1-Mediated Phosphorylation. PMID:25981667
Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach. PMID:25945798
Cancer/Testis Antigen PASD1 Silences the Circadian Clock. PMID:25936801
Circadian metabolism in the light of evolution. PMID:25927923
Manipulating the circadian and sleep cycles to protect against metabolic disease. PMID:25852644
Circadian regulation of cellular physiology. PMID:25707277
Genetics and epigenetics of circadian rhythms and their potential roles in neuropsychiatric disorders. PMID:25652815
Circadian clock proteins in mood regulation. PMID:25610405
Association of the circadian factor Period 2 to p53 influences p53's function in DNA-damage signaling. PMID:25411341
Circadian polymorphisms in night owls, in bipolars, and in non-24-hour sleep cycles. PMID:25395965
Prevalence of cycling genes and drug targets calls for prospective chronotherapeutics. PMID:25368193
Genetic adaptation of the human circadian clock to day-length latitudinal variations and relevance for affective disorders. PMID:25358694
Role for LSM genes in the regulation of circadian rhythms. PMID:25288739
An intensity ratio of interlocking loops determines circadian period length. PMID:25122753
The circadian factor Period 2 modulates p53 stability and transcriptional activity in unstressed cells. PMID:25103245
Liver clock protein BMAL1 promotes de novo lipogenesis through insulin-mTORC2-AKT signaling. PMID:25063808
Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells. PMID:25028488
Ras-mediated deregulation of the circadian clock in cancer. PMID:24875049
Strengths and limitations of period estimation methods for circadian data. PMID:24809473
Machine learning helps identify CHRONO as a circadian clock component. PMID:24737000
SWELL1, a plasma membrane protein, is an essential component of volume-regulated anion channel. PMID:24725410
Cell type-specific functions of period genes revealed by novel adipocyte and hepatocyte circadian clock models. PMID:24699442
Testing the role of circadian genes in conferring risk for psychiatric disorders. PMID:24687905
Synergistic induction of the clock protein PERIOD by insulin-like peptide and prothoracicotropic hormone in Rhodnius prolixus (Hemiptera): implications for convergence of hormone signaling pathways. PMID:24600396
Phosphorylation of the cryptochrome 1 C-terminal tail regulates circadian period length. PMID:24158435
Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga. PMID:24127907
miRNAs are required for generating a time delay critical for the circadian oscillator. PMID:24094851
Circadian redox and metabolic oscillations in mammalian systems. PMID:24063592
The Ccr4-not protein complex regulates the phase of the Neurospora circadian clock by controlling white collar protein stability and activity. PMID:24030828
The CRTC1-SIK1 pathway regulates entrainment of the circadian clock. PMID:23993098
Photoreceptor phagocytosis is mediated by phosphoinositide signaling. PMID:23913857
Estimating confidence intervals in predicted responses for oscillatory biological models. PMID:23895261
Critical differences between isoforms of securin reveal mechanisms of separase regulation. PMID:23798554
Cracking the O-GlcNAc code in metabolism. PMID:23647930
Picrotoxin dramatically speeds the mammalian circadian clock independent of Cys-loop receptors. PMID:23576702
Dynamic circadian protein-protein interaction networks predict temporal organization of cellular functions. PMID:23555304
FMR1, circadian genes and depression: suggestive associations or false discovery? PMID:23521777
Chronobiology of Melatonin beyond the Feedback to the Suprachiasmatic Nucleus-Consequences to Melatonin Dysfunction. PMID:23481642
Global approaches for telling time: omics and the Arabidopsis circadian clock. PMID:23435351
Histone methyltransferase MLL3 contributes to genome-scale circadian transcription. PMID:23297224
Molecular mechanism of circadian rhythmicity of seizures in temporal lobe epilepsy. PMID:23189039
Small molecule modifiers of circadian clocks. PMID:23161063
The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PMID:23144788
Gene and genome parameters of mammalian liver circadian genes (LCGs). PMID:23071677
Traumatic brain injury-induced dysregulation of the circadian clock. PMID:23056261
Monitoring cell-autonomous circadian clock rhythms of gene expression using luciferase bioluminescence reporters. PMID:23052244
The role of circadian clocks in metabolic disease. PMID:23012586
Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. PMID:22936566
NAT1/DAP5/p97 and atypical translational control in the Drosophila Circadian Oscillator. PMID:22904033
Identification of small molecule activators of cryptochrome. PMID:22798407
Speed control: cogs and gears that drive the circadian clock. PMID:22748426
Live-cell monitoring of periodic gene expression in synchronous human cells identifies Forkhead genes involved in cell cycle control. PMID:22740631
USP2a protein deubiquitinates and stabilizes the circadian protein CRY1 in response to inflammatory signals. PMID:22669941
Smith-Magenis syndrome results in disruption of CLOCK gene transcription and reveals an integral role for RAI1 in the maintenance of circadian rhythmicity. PMID:22578325
A survey of genomic studies supports association of circadian clock genes with bipolar disorder spectrum illnesses and lithium response. PMID:22384149
Casein kinase 1 proteomics reveal prohibitin 2 function in molecular clock. PMID:22384121
Circadian disruption and remedial interventions: effects and interventions for jet lag for athletic peak performance. PMID:22299812
Involvement of stress kinase mitogen-activated protein kinase kinase 7 in regulation of mammalian circadian clock. PMID:22267733
Tuning the mammalian circadian clock: robust synergy of two loops. PMID:22194677
Identification of diverse modulators of central and peripheral circadian clocks by high-throughput chemical screening. PMID:22184224
Expression of circadian clock gene human Period2 (hPer2) in human colorectal carcinoma. PMID:22166120
In vitro circadian rhythms: imaging and electrophysiology. PMID:21819387
A new mutation affecting FRQ-less rhythms in the circadian system of Neurospora crassa. PMID:21731506
Circadian regulation of ATP release in astrocytes. PMID:21653839
Oscillators entrained by food and the emergence of anticipatory timing behaviors. PMID:21544255
Proteasome function is required for biological timing throughout the twenty-four hour cycle. PMID:21530263
A systems biological view of intracellular pathogens. PMID:21349090
Circadian clocks in human red blood cells. PMID:21270888
High-throughput chemical screen identifies a novel potent modulator of cellular circadian rhythms and reveals CKIα as a clock regulatory kinase. PMID:21179498
Vigilance and validation: Keys to success in RNAi screening. PMID:21142076
Circadian integration of metabolism and energetics. PMID:21127246
IKKα contributes to canonical NF-κB activation downstream of Nod1-mediated peptidoglycan recognition. PMID:20976174
Clocks not winding down: unravelling circadian networks. PMID:20966970
Multiscale complexity in the mammalian circadian clock. PMID:20934868
Commentary: the year in circadian rhythms. PMID:20926591
Genomics and systems approaches in the mammalian circadian clock. PMID:20926286
JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. PMID:20876817
PPARs in Rhythmic Metabolic Regulation and Implications in Health and Disease. PMID:20871864
Circadian control of global gene expression patterns. PMID:20809800
Spotlight on post-transcriptional control in the circadian system. PMID:20803230
Rapid assessment of gene function in the circadian clock using artificial microRNA in Arabidopsis mesophyll protoplasts. PMID:20709829
Factors affecting reproducibility between genome-scale siRNA-based screens. PMID:20625183
AKT and TOR signaling set the pace of the circadian pacemaker. PMID:20619819
Circadian rhythms in gene expression: Relationship to physiology, disease, drug disposition and drug action. PMID:20542067
E3 ligases Arf-bp1 and Pam mediate lithium-stimulated degradation of the circadian heme receptor Rev-erb alpha. PMID:20534529
Circadian rhythms and cancer. PMID:20237421
Circadian clock control of the cellular response to DNA damage. PMID:20227409
CRY2 is associated with depression. PMID:20195522
Development of the circadian oscillator during differentiation of mouse embryonic stem cells in vitro. PMID:20133594
An overview of the PubChem BioAssay resource. PMID:19933261
Profile of Steve Kay. PMID:19846773
High-throughput screening and chemical biology: new approaches for understanding circadian clock mechanisms. PMID:19778719 -
Standards for systems biology
PubMed citations: 40.
40 articles citing: Standards for systems biology
From whole-mount to single-cell spatial assessment of gene expression in 3D. PMID:33097816
Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers. PMID:30965282
A minimum information standard for reproducing bench-scale bacterial cell growth and productivity. PMID:30534611
Compliance with minimum information guidelines in public metabolomics repositories. PMID:28949328
The Image Data Resource: A Bioimage Data Integration and Publication Platform. PMID:28775673
How to make Mathematics Biology's next and better microscope. PMID:27920995
Repertoires: How to Transform a Project into a Research Community. PMID:26412866
A review on computational systems biology of pathogen-host interactions. PMID:25914674
Improving collaboration by standardization efforts in systems biology. PMID:25538939
e!DAL--a framework to store, share and publish research data. PMID:24958009
Toward an integrated software platform for systems pharmacology. PMID:24150748
Biomarkers in autism spectrum disorder: the old and the new. PMID:24096533
Publishing 13C metabolic flux analysis studies: a review and future perspectives. PMID:24025367
A UML profile for the OBO relation ontology. PMID:23095840
Data management strategies for multinational large-scale systems biology projects. PMID:23047157
Multiscale modeling and data integration in the virtual physiological rat project. PMID:22805979
DIPSBC--data integration platform for systems biology collaborations. PMID:22568834
Gene selection and classification for cancer microarray data based on machine learning and similarity measures. PMID:22369383
Software for systems biology: from tools to integrated platforms. PMID:22048662
Integrative computational biology for cancer research. PMID:21691773
Data standards for Omics data: the basis of data sharing and reuse. PMID:21370078
Biocoder: A programming language for standardizing and automating biology protocols. PMID:21059251
Unraveling human complexity and disease with systems biology and personalized medicine. PMID:20577569
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. PMID:20214801
Feature selection and classification of MAQC-II breast cancer and multiple myeloma microarray gene expression data. PMID:20011240
XML-based approaches for the integration of heterogeneous bio-molecular data. PMID:19828083
Trends in modeling Biomedical Complex Systems. PMID:19828068
BioGateway: a semantic systems biology tool for the life sciences. PMID:19796395
Consistent design schematics for biological systems: standardization of representation in biological engineering. PMID:19493898
DASMI: exchanging, annotating and assessing molecular interaction data. PMID:19420069
Systems medicine: the future of medical genomics and healthcare. PMID:19348689
A survey of visualization tools for biological network analysis. PMID:19040716
[Biobanking and Biomolecular Resources Research Infrastructure (BBMRI). Implications for pathology]. PMID:18810444
Getting started in biological pathway construction and analysis. PMID:18463709
Accuracy and application of the motif expression decomposition method in dissecting transcriptional regulation. PMID:18411204
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). PMID:18327244
Optimization of cDNA microarrays procedures using criteria that do not rely on external standards. PMID:17949480
Genetic and molecular epidemiology. PMID:17699527
Understanding diseases by mouse click: the promise and potential of computational approaches in Systems Biology. PMID:17666096
PASSIM--an open source software system for managing information in biomedical studies. PMID:17291344
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
assay
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
rna interference
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
short hairpin rna
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
small interfering rna
metasource: Fairsharing.org
version: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
assay
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
rna interference
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
short hairpin rna
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
small interfering rna
metasource: Fairsharing.orgversion: FAIRsharing.org: MIARE-TAB; Minimum Information About an RNAi Experiment Tabular; DOI: https://doi.org/10.25504/FAIRsharing.t8g7yc; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
assay gene rna interference short hairpin rna small interfering rna
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