Metabolic Atlas
Names
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Metabolic Atlas
metasource: Fairsharing.org
version: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:12.620821
metabolicatlas
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:12.620821
Names
More detailed information about this field from each metasource.
Metabolic Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:12.620821
metabolicatlas
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:12.620821
Names
More detailed information about this field from each metasource.
Metabolic Atlas
metasource: Fairsharing.orgversion: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:12.620821
metabolicatlas
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:12.620821
Metabolic Atlas integrates open source genome-scale metabolic models (GEMs) of human and yeast for easy browsing and analysis. It also contains many more GEMs constructed by our organization. Detailed biochemical information is provided for individual model components, such as reactions, metabolites, and genes. These components are also associated with standard identifiers, facilitating integration with external databases, such as the Human Protein Atlas.
Description
More detailed information about this field from each metasource.
Metabolic Atlas integrates open source genome-scale metabolic models (GEMs) of human and yeast for easy browsing and analysis. It also contains many more GEMs constructed by our organization. Detailed biochemical information is provided for individual model components, such as reactions, metabolites, and genes. These components are also associated with standard identifiers, facilitating integration with external databases, such as the Human Protein Atlas.
metasource: Fairsharing.orgversion: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:12.620821
Webpage:
https://metabolicatlas.org/Webpage
More detailed information about this field from each metasource.
https://metabolicatlas.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
https://metabolicatlas.org
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:12.620821
Licence:
Name: GPL-3.0Licence name
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Publications:
Publications
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An atlas of human metabolism
PMID: 32209698
metasource: Fairsharing.org
version: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:12.620821
Publications
More detailed information about this field from each metasource.
An atlas of human metabolism
PMID: 32209698
metasource: Fairsharing.org
version: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:12.620821
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An atlas of human metabolism
PubMed citations: 58.
58 articles citing: An atlas of human metabolism
Constraint-Based Reconstruction and Analyses of Metabolic Models: Open-Source Python Tools and Applications to Cancer. PMID:35875150
Machine learning-guided evaluation of extraction and simulation methods for cancer patient-specific metabolic models. PMID:35782748
Metabolic modeling-based drug repurposing in Glioblastoma. PMID:35778411
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0. PMID:35773252
A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale. PMID:35749559
Metabolomic and Transcriptomic Profiling Identified Significant Genes in Thymic Epithelial Tumor. PMID:35736499
Exploring the metabolic landscape of pancreatic ductal adenocarcinoma cells using genome-scale metabolic modeling. PMID:35712079
Identification of Context-Specific Fitness Genes Associated With Metabolic Rearrangements for Prognosis and Potential Treatment Targets for Liver Cancer. PMID:35646101
Genome-scale metabolic models for natural and long-term drug-induced viral control in HIV infection. PMID:35537851
The microbiome in reproductive health: protocol for a systems biology approach using a prospective, observational study design. PMID:35441092
Silencing of STE20-type kinase STK25 in human aortic endothelial and smooth muscle cells is atheroprotective. PMID:35440683
Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo hemorrhagic fever viruses for novel therapeutic target. PMID:35437144
Networks and Graphs Discovery in Metabolomics Data Analysis and Interpretation. PMID:35350714
System-level metabolic modeling facilitates unveiling metabolic signature in exceptional longevity. PMID:35343058
Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models. PMID:35339845
Compartmentalization of metabolism between cell types in multicellular organisms: a computational perspective. PMID:35224313
Bruceine D Identified as a Drug Candidate against Breast Cancer by a Novel Drug Selection Pipeline and Cell Viability Assay. PMID:35215292
Systems-based approaches to study immunometabolism. PMID:35121805
Systems Biology Approaches to Decipher the Underlying Molecular Mechanisms of Glioblastoma Multiforme. PMID:34948010
Toward modeling metabolic state from single-cell transcriptomics. PMID:34785394
Model-based assessment of mammalian cell metabolic functionalities using omics data. PMID:34761247
DCcov: Repositioning of drugs and drug combinations for SARS-CoV-2 infected lung through constraint-based modeling. PMID:34723158
Discovery of Two Novel Oxidases Using a High-Throughput Activity Screen. PMID:34709726
Omics and Computational Modeling Approaches for the Effective Treatment of Drug-Resistant Cancer Cells. PMID:34691155
Importance of the biomass formulation for cancer metabolic modeling and drug prediction. PMID:34622163
Genome Scale Modeling to Study the Metabolic Competition between Cells in the Tumor Microenvironment. PMID:34572839
Robust metabolic transcriptional components in 34,494 patient-derived cancer-related samples and cell lines. PMID:34565468
Path to improving the life cycle and quality of genome-scale models of metabolism. PMID:34555324
Thermodynamic Genome-Scale Metabolic Modeling of Metallodrug Resistance in Colorectal Cancer. PMID:34439283
First trimester pregnancy outcomes in a large IVF center from the Lombardy County (Italy) during the peak COVID-19 pandemic. PMID:34400730
NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolism. PMID:34340747
Integration of transcriptional and metabolic control in macrophage activation. PMID:34328708
Identification and Characterization of Robust Hepatocellular Carcinoma Prognostic Subtypes Based on an Integrative Metabolite-Protein Interaction Network. PMID:34247449
SpaceM reveals metabolic states of single cells. PMID:34226721
The Mystery of Extramitochondrial Proteins Lysine Succinylation. PMID:34199982
Abnormal brain cholesterol homeostasis in Alzheimer's disease-a targeted metabolomic and transcriptomic study. PMID:34075056
Metabolomics and computational analysis of the role of monoamine oxidase activity in delirium and SARS-COV-2 infection. PMID:34017039
Molecular pathways behind acquired obesity: Adipose tissue and skeletal muscle multiomics in monozygotic twin pairs discordant for BMI. PMID:33948567
iNetModels 2.0: an interactive visualization and database of multi-omics data. PMID:33849075
Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection. PMID:33835998
Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes. PMID:33781078
Multi-omics approaches for revealing the complexity of cardiovascular disease. PMID:33725119
DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks. PMID:33571201
Mapping the Metabolic Networks of Tumor Cells and Cancer-Associated Fibroblasts. PMID:33540679
Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations. PMID:33437055
Metabolic Reprogramming of Fibroblasts as Therapeutic Target in Rheumatoid Arthritis and Cancer: Deciphering Key Mechanisms Using Computational Systems Biology Approaches. PMID:33374292
From Glucose to Lactate and Transiting Intermediates Through Mitochondria, Bypassing Pyruvate Kinase: Considerations for Cells Exhibiting Dimeric PKM2 or Otherwise Inhibited Kinase Activity. PMID:33335484
Inhibiting the reproduction of SARS-CoV-2 through perturbations in human lung cell metabolic network. PMID:33234678
The Human Protein Atlas-Spatial localization of the human proteome in health and disease. PMID:33146890
A high-stringency blueprint of the human proteome. PMID:33067450
Role of Glutathione in Cancer: From Mechanisms to Therapies. PMID:33050144
Systems Biology: A Multi-Omics Integration Approach to Metabolism and the Microbiome. PMID:32981293
Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning. PMID:32967266
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. PMID:32931287
Cysteine Aminotransferase (CAT): A Pivotal Sponsor in Metabolic Remodeling and an Ally of 3-Mercaptopyruvate Sulfurtransferase (MST) in Cancer. PMID:32882966
Deep Proteomic Deconvolution of Interferons and HBV Transfection Effects on a Hepatoblastoma Cell Line. PMID:32685848
A Genome-Scale Metabolic Model of 2,3-Butanediol Production by Thermophilic Bacteria Geobacillus icigianus. PMID:32635563
Prior and novel coronaviruses, Coronavirus Disease 2019 (COVID-19), and human reproduction: what is known? PMID:32482250
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biomarker
metasource: Fairsharing.org
version: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
systems biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:12.620821
Tags
More detailed information about this field from each metasource.
biomarker
metasource: Fairsharing.orgversion: FAIRsharing.org: Metabolic Atlas; Metabolic Atlas; DOI: https://doi.org/10.25504/FAIRsharing.7JCjD0; Last edited: Sept. 8, 2020, 3:10 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
systems biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:12.620821
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