Dictyostelium Phenotype Ontology
Names
More detailed information about this field from each metasource.
Dictyostelium Phenotype Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
DDPHENO
metasource: Fairsharing.org
version: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/DDPHENO
Dictyostelium Discoideum Phenotype Ontology
metasource: Biontology / Bioportal
version: extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/DDPHENO
Names
More detailed information about this field from each metasource.
Dictyostelium Phenotype Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
DDPHENO
metasource: Fairsharing.orgversion: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/DDPHENO
Dictyostelium Discoideum Phenotype Ontology
metasource: Biontology / Bioportalversion: extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/DDPHENO
Other names: DDPHENO, Dictyostelium Discoideum Phenotype Ontology
Names
More detailed information about this field from each metasource.
Dictyostelium Phenotype Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
DDPHENO
metasource: Fairsharing.orgversion: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/DDPHENO
Dictyostelium Discoideum Phenotype Ontology
metasource: Biontology / Bioportalversion: extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/DDPHENO
A structured controlled vocabulary of phenotypes of the social amoeba Dictyostelium discoideum. The Dicty Phenotype Ontology is a hierarchical controlled vocabulary used for annotating strains with phenotypes. Terms from the Dicty Phenotype Ontology are required when annotating phenotypes within dictyBase. The phenotype ontology consists of two composite terms: (1) the anatomical part or the biological process changed in the mutant, and (2) a quality describing that modification. For example, a ‘delayed aggregation’ phenotype qualifies the ‘aggregation’ (biological process) as being ‘delayed’, or the ‘decreased spore size’ qualifies the ‘spore’ to be of ‘decreased size’.
Description
More detailed information about this field from each metasource.
A structured controlled vocabulary of phenotypes of the social amoeba Dictyostelium discoideum. The Dicty Phenotype Ontology is a hierarchical controlled vocabulary used for annotating strains with phenotypes. Terms from the Dicty Phenotype Ontology are required when annotating phenotypes within dictyBase. The phenotype ontology consists of two composite terms: (1) the anatomical part or the biological process changed in the mutant, and (2) a quality describing that modification. For example, a ‘delayed aggregation’ phenotype qualifies the ‘aggregation’ (biological process) as being ‘delayed’, or the ‘decreased spore size’ qualifies the ‘spore’ to be of ‘decreased size’.
metasource: Fairsharing.orgversion: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum.
metasource: Biontology / Bioportalversion: extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/DDPHENO
Webpage:
https://github.com/dictyBase/migration-data/blob/master/ontologies/dicty_phenotypes.oboWebpage
More detailed information about this field from each metasource.
https://github.com/dictyBase/migration-data/blob/master/ontologies/dicty_phenotypes.obo
metasource: Fairsharing.orgversion: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
http://dictybase.org/
metasource: Biontology / Bioportalversion: extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/DDPHENO
Publications:
Publications
More detailed information about this field from each metasource.
One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012
PMID: 23494302
metasource: Fairsharing.org
version: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications
More detailed information about this field from each metasource.
One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012
PMID: 23494302
metasource: Fairsharing.org
version: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
-
One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012
PubMed citations: 72.
72 articles citing: One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012
Context dependence in the symbiosis between Dictyostelium discoideum and Paraburkholderia. PMID:35784451
Cells responding to chemoattractant on a structured substrate. PMID:35644945
The Type VI Secretion Systems in Plant-Beneficial Bacteria Modulate Prokaryotic and Eukaryotic Interactions in the Rhizosphere. PMID:35464916
Patterning of the cell cortex and the localization of cleavage furrows in multi-nucleate cells. PMID:35274133
Extracellular Signalling Modulates Scar/WAVE Complex Activity through Abi Phosphorylation. PMID:34943993
Moving the Research Forward: The Best of British Biology Using the Tractable Model System Dictyostelium discoideum. PMID:34831258
A chemorepellent inhibits local Ras activation to inhibit pseudopod formation to bias cell movement away from the chemorepellent. PMID:34788129
A post-transcriptional regulon controlled by TtpA, the single tristetraprolin family member expressed in Dictyostelium discoideum. PMID:34718768
Genetic Instability Due to Spindle Anomalies Visualized in Mutants of Dictyostelium. PMID:34571889
Interactome and evolutionary conservation of Dictyostelid small GTPases and their direct regulators. PMID:34565293
How Phagocytes Acquired the Capability of Hunting and Removing Pathogens From a Human Body: Lessons Learned From Chemotaxis and Phagocytosis of Dictyostelium discoideum (Review). PMID:34490271
The Parkinson's Disease-Associated Protein DJ-1 Protects Dictyostelium Cells from AMPK-Dependent Outcomes of Oxidative Stress. PMID:34440642
Mutant resources for functional genomics in Dictyostelium discoideum using REMI-seq technology. PMID:34429112
Aberrant Autophagy Impacts Growth and Multicellular Development in a Dictyostelium Knockout Model of CLN5 Disease. PMID:34291044
An Autocrine Negative Feedback Loop Inhibits Dictyostelium discoideum Proliferation through Pathways Including IP3/Ca2. PMID:34154396
VASP-mediated actin dynamics activate and recruit a filopodia myosin. PMID:34042588
Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias. PMID:33871580
Polyphosphate is an extracellular signal that can facilitate bacterial survival in eukaryotic cells. PMID:33268492
Dictyostelium discoideum as a non-mammalian biomedical model. PMID:33124755
A Highly Conserved Iron-Sulfur Cluster Assembly Machinery between Humans and Amoeba Dictyostelium discoideum: The Characterization of Frataxin. PMID:32957566
Cell-substrate adhesion drives Scar/WAVE activation and phosphorylation by a Ste20-family kinase, which controls pseudopod lifetime. PMID:32745097
Unilateral Cleavage Furrows in Multinucleate Cells. PMID:32570994
Coordinated Ras and Rac Activity Shapes Macropinocytic Cups and Enables Phagocytosis of Geometrically Diverse Bacteria. PMID:32531280
Functional Characterisation of the Autophagy ATG12~5/16 Complex in Dictyostelium discoideum. PMID:32397394
Eco-evolutionary significance of "loners". PMID:32191693
Mitochondrial localization of Dictyostelium discoideum dUTPase mediated by its N-terminus. PMID:31910901
The FtsZ Homolog, FszB, Inhibits Mitochondrial Dynamics in Dictyostelium discoideum. PMID:31881789
Investigation of the host transcriptional response to intracellular bacterial infection using Dictyostelium discoideum as a host model. PMID:31823727
DPF is a cell-density sensing factor, with cell-autonomous and non-autonomous functions during Dictyostelium growth and development. PMID:31791330
Actin Waves and Dynamic Patterning of the Plasma Membrane. PMID:31543704
Conditional expression explains molecular evolution of social genes in a microbe. PMID:31337766
mTORC1/AMPK responses define a core gene set for developmental cell fate switching. PMID:31319820
Caffeine inhibits PI3K and mTORC2 in Dictyostelium and differentially affects multiple other cAMP chemoattractant signaling effectors. PMID:30879206
Akt and SGK protein kinases are required for efficient feeding by macropinocytosis. PMID:30617109
Contribution of the Twin-Arginine Translocation System to the Intracellular Survival of Salmonella Typhimurium in Dictyostelium discoideum. PMID:30574134
Exosome isolation and purification via hydrophobic interaction chromatography using a polyester, capillary-channeled polymer fiber phase. PMID:30548636
An endogenous chemorepellent directs cell movement by inhibiting pseudopods at one side of cells. PMID:30462573
High-throughput Measurement of Dictyostelium discoideum Macropinocytosis by Flow Cytometry. PMID:30247467
Diacylglycerol kinase (DGKA) regulates the effect of the epilepsy and bipolar disorder treatment valproic acid in Dictyostelium discoideum. PMID:30135067
Extracellular vesicles direct migration by synthesizing and releasing chemotactic signals. PMID:29884750
The cAMP-induced G protein subunits dissociation monitored in live Dictyostelium cells by BRET reveals two activation rates, a positive effect of caffeine and potential role of microtubules. PMID:29698704
IreA Controls Endoplasmic Reticulum Stress-Induced Autophagy and Survival through Homeostasis Recovery. PMID:29632077
Collective regulation of cell motility using an accurate density-sensing system. PMID:29563247
Acanthamoeba and Dictyostelium as Cellular Models for Legionella Infection. PMID:29552544
Evaluating Different Virulence Traits of Klebsiella pneumoniae Using Dictyostelium discoideum and Zebrafish Larvae as Host Models. PMID:29479519
Inorganic Polyphosphate Is Essential for Salmonella Typhimurium Virulence and Survival in Dictyostelium discoideum. PMID:29441327
The physiological regulation of macropinocytosis during Dictyostelium growth and development. PMID:29440238
Chemotactic network responses to live bacteria show independence of phagocytosis from chemoreceptor sensing. PMID:28541182
Coupled excitable Ras and F-actin activation mediates spontaneous pseudopod formation and directed cell movement. PMID:28148648
A polychromatic 'greenbeard' locus determines patterns of cooperation in a social amoeba. PMID:28120827
A Diaphanous-related formin links Ras signaling directly to actin assembly in macropinocytosis and phagocytosis. PMID:27821733
Dictyostelium discoideum as a Novel Host System to Study the Interaction between Phagocytes and Yeasts. PMID:27818653
A set of genes conserved in sequence and expression traces back the establishment of multicellularity in social amoebae. PMID:27814692
WASH drives early recycling from macropinosomes and phagosomes to maintain surface phagocytic receptors. PMID:27647881
Relevant Genes Linked to Virulence Are Required for Salmonella Typhimurium to Survive Intracellularly in the Social Amoeba Dictyostelium discoideum. PMID:27602025
Gene discovery by chemical mutagenesis and whole-genome sequencing in Dictyostelium. PMID:27307293
A Novel Glycolipid Biosurfactant Confers Grazing Resistance upon Pantoea ananatis BRT175 against the Social Amoeba Dictyostelium discoideum. PMID:27303689
De novo actin polymerization is required for model Hirano body formation in Dictyostelium. PMID:27215322
The Inositol-3-Phosphate Synthase Biosynthetic Enzyme Has Distinct Catalytic and Metabolic Roles. PMID:26951199
Systematic evaluation of buffer influences on the development of Dictyostelium discoideum. PMID:26791868
Direct Interaction between TalinB and Rap1 is necessary for adhesion of Dictyostelium cells. PMID:26744136
Dissection of Francisella-Host Cell Interactions in Dictyostelium discoideum. PMID:26712555
Dissecting the function of Atg1 complex in Dictyostelium autophagy reveals a connection with the pentose phosphate pathway enzyme transketolase. PMID:26246495
dictyBase 2015: Expanding data and annotations in a new software environment. PMID:26088819
Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation. PMID:25941378
Biochemical functional predictions for protein structures of unknown or uncertain function. PMID:25848497
An ancestral bacterial division system is widespread in eukaryotic mitochondria. PMID:25831547
Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation. PMID:25758444
The autophagic machinery ensures nonlytic transmission of mycobacteria. PMID:25646440
Fitness tradeoffs between spores and nonaggregating cells can explain the coexistence of diverse genotypes in cellular slime molds. PMID:25605926
Rap1-dependent pathways coordinate cytokinesis in Dictyostelium. PMID:25298405
A novel human receptor involved in bitter tastant detection identified using Dictyostelium discoideum. PMID:24006265
Tags:
Tags
More detailed information about this field from each metasource.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Tags
More detailed information about this field from each metasource.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: DDPHENO; Dictyostelium Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.9c1p18; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Need help integrating and/or managing biomedical data?