CTCF Binding Site Database

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

PRODORIC2

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

Factorbook

Human transcription factor binding data from ChIP-seq

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

TrSDB

Transcription factor database

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

TTSMI

Triplex Target DNA Sites in the human genome

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

TRED - Transcriptional Regulatory Element Database

Transcriptional regulatory element database

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

SCPD - Saccharomyces cerevisiae promoter database

A database of yeast promoters

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

CMGSDB

Computational models for gene silencing in C. elegans

FlyFactorSurvey

Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

TESS

TESS (Transcription Element Search System, http://www.cbil.upenn.edu/tess) is a web-based service that searches DNA sequence for transcription factor binding sites. It integrates three databases of tr ...