Integrative database around plant genomes.
plant biology genomics
Arabidopsis thaliana genes involved in stress response
This database contains data on 105 Arabidopsis transcriptome projects (3262 hybridized samples) in public access out of a total of 172 projects (~6440 hybridized samples).
Repetitive sequences in plant genomes
An integrative database for traditional Chinese medicine plant genomes.
Reference panels and imputation methods for plant genomes
Conserved syntenies for various animal, plant and bacterial genomes
Clusters of predicted plant proteins
The Tobacco Markers & Primers Database.
Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JGI users and the broader plant science community a hub for accessing, visualizing and a ...
Plant metabolic, regulatory and signaling pathways
Database of Cork Oak EST sequences from the Portuguese Cork Oak sequencing project.
The purpose of this web portal is to facilitate the discoverability of public data on plant biology managed by different laboratories across the world. The web portal indexes and makes findable any k ...
Structural and functionnal annotation of plant gene and protein families by a network of experts.
Quercus robur annotation database
This repository provides several plant genomic and phenotypic datasets resulting from IPK and German Plant Phenotyping Network (DPPN) research activities. It was established in January 2015. The backg ...
The LegumeIP 2.0 database hosts large-scale genomics and transcriptomics data and provides integrative bioinformatics tools for the study of gene function and evolution in legumes.
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes and play significant roles in physiological and/or pathological processes. PlantNATsDB (Plant Natura ...
WheatMine integrates many types of data for Triticum aestivum including gene model, markers, and scaffolds. You can run flexible queries, export results and analyse lists of data.
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. The PO is under active development to expand ...
PECO is a structured, controlled vocabulary for the representation of plant experimental conditions. It describes the treatments, growing conditions, and/or study types used in various types of plant ...