Other names: ScipionWorkflows
Repository of workflows for image processing in cryo-electron microscopy using Scipion.
electron microscopy
The CryoEM Ontology for describing objects and workflows in Single Particle Analysis by Cryo Electron Microscopy.
Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. The Electron Microscopy Data Bank (EMDB) is a publ ...
EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure. Th ...
The Electron Microscopy Exchange (EMX) format is a standard for metadata exchange in 3D electron microscopy.
3D cryo-electron microscopy maps, models and metadata
A repository of cleaned PDB-derived RNA 3D structures.
The Open Microscopy Environment Ontology (OME-OWL) is a light microscopy imaging ontology that has been developed through translation of the OME data model. The aim of this ontology is to support mult ...
webKnossos is an open-source data sharing and annotation platform for multi-terabyte 2D and 3D electron-microscopy (EM) and light-microscopy (LM) datasets. Core features are fast 3D data streaming, li ...
Three-dimensional Electron Microscopy (3DEM) has become a key experimental method in structural biology for a broad spectrum of biological specimens from molecules to cells. The EMDataResource project ...
The WorkflowHub is a registry of scientific workflows.
Database for comprehensive results on the conformational dynamics of high molecular weight proteins and protein assemblies. Analysis is performed using a coarse-grained computational approach that is ...
The CWL is an informal, multi-vendor working group consisting of various organizations and individuals that have an interest in portability of data analysis workflows. We have created specifications t ...
CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy; prepare and separate material for further analys ...
CERES is a cryo-EM re-refinement system for continuous improvement of deposited models.
The Chemotion-repository is a repository for chemistry research data. The repository was founded at the Karlsruhe Institute of Technology (KIT) in Germany as a project funded by the German Research Fo ...
The Yeast Resource Center Public Image Repository is a database of fluorescent microscopy images and their associated metadata/experimental parameters. The images depict the localization, co-localiza ...
BioVeL is a virtual e-laboratory that supports research on biodiversity issues using large amounts of data from cross-disciplinary sources. BioVeL supports the development and use of workflows to pro ...
The Recommended Metadata for Biological Images (REMBI) are a set of guidelines developed by the bioimaging community as a framework for discussing different aspects of useful sharing of imaging data. ...
The Database for Aligned Ribosomal Complexes (DARC) site provides a resource for directly comparing the structures of available ribosomal complexes.
Repository of Medan Area University is an institutional repository that collects, preserves, and distributes digital material from the university.