Dockstore
Brings together Docker images with standardized, machine-readable ways of describing and running the tools contained within.
Description
More detailed information about this field from each metasource.
Brings together Docker images with standardized, machine-readable ways of describing and running the tools contained within.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:55.582929
Webpage:
https://dockstore.orgWebpage
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Licence:
Name: Apache-2.0Licence name
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Publications:
Publications
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The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows
PMID: 28344774
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:55.582929
Publications
More detailed information about this field from each metasource.
The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows
PMID: 28344774
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:55.582929
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The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows
PubMed citations: 28.
28 articles citing: The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows
Perspectives on automated composition of workflows in the life sciences. PMID:34804501
Narrative online guides for the interpretation of digital-pathology images and tissue-atlas data. PMID:34750536
Design considerations for workflow management systems use in production genomics research and the clinic. PMID:34737383
GEM: scalable and flexible gene-environment interaction analysis in millions of samples. PMID:34695175
Simplifying the development of portable, scalable, and reproducible workflows. PMID:34643507
Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers. PMID:34556866
NCI Imaging Data Commons. PMID:34185678
CLUE: Exact maximal reduction of kinetic models by constrained lumping of differential equations. PMID:34037712
The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols. PMID:33978761
The Need for a Human Pangenome Reference Sequence. PMID:33929893
Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays. PMID:33627090
BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers. PMID:33625229
aCLImatise: Automated generation of tool definitions for bioinformatics workflows. PMID:33325479
Practical guide for managing large-scale human genome data in research. PMID:33097812
Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale. PMID:32453635
Pan-cancer analysis of whole genomes. PMID:32025007
Organizing genome engineering for the gigabase scale. PMID:32019919
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. PMID:31597973
Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software. PMID:31544213
Building Containerized Workflows Using the BioDepot-Workflow-Builder. PMID:31521606
The bio.tools registry of software tools and data resources for the life sciences. PMID:31405382
CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language. PMID:31321430
ParaDB: A manually curated database containing genomic annotation for the human pathogenic fungi Paracoccidioides spp. PMID:31306428
Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments. PMID:31222200
Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data. PMID:30691868
Practical Computational Reproducibility in the Life Sciences. PMID:29953862
Using bio.tools to generate and annotate workbench tool descriptions. PMID:29333231
Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data. PMID:29123641
Tags:
Tags
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bioinformatics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:55.582929
computational biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:55.582929
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:55.582929
Tags
More detailed information about this field from each metasource.
bioinformatics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:55.582929
computational biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:55.582929
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:55.582929
bioinformatics computational biology genomics
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