bio.tools
bio.tools is a registry of information about bioinformatics software and data services. It was created to help researchers in biological and biomedical science to find and use such resources.
Description
More detailed information about this field from each metasource.
bio.tools is a registry of information about bioinformatics software and data services. It was created to help researchers in biological and biomedical science to find and use such resources.
metasource: Fairsharing.orgversion: None
bio.tools is a software registry for bioinformatics and the life sciences.
metasource: re3data.orgversion: re3data.org: bio.tools; editing status 2021-10-27; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN1G last accessed: 2022-11-04
The community registry of computational tools and data resources for biosciences.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
Webpage:
https://bio.tools/Webpage
More detailed information about this field from each metasource.
https://bio.tools/
metasource: Fairsharing.orgversion: None
https://bio.tools
metasource: re3data.orgversion: re3data.org: bio.tools; editing status 2021-10-27; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN1G last accessed: 2022-11-04
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: None
CC
metasource: re3data.orgversion: re3data.org: bio.tools; editing status 2021-10-27; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN1G last accessed: 2022-11-04
GPL-3.0
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: None
https://spdx.org/licenses/CC-BY-4.0
metasource: re3data.orgversion: re3data.org: bio.tools; editing status 2021-10-27; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN1G last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
Tools and data services registry: a community effort to document bioinformatics resources
PMID: 26538599
metasource: Fairsharing.org
version: None
http://dx.doi.org/10.1093/nar/gkv1116
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
http://dx.doi.org/10.12688/f1000research.12974.1
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
http://dx.doi.org/10.1093/gigascience/gix022
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
http://dx.doi.org/10.1007/s10009-015-0392-z
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
Publications
More detailed information about this field from each metasource.
Tools and data services registry: a community effort to document bioinformatics resources
PMID: 26538599
metasource: Fairsharing.org
version: None
http://dx.doi.org/10.1093/nar/gkv1116
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
http://dx.doi.org/10.12688/f1000research.12974.1
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
http://dx.doi.org/10.1093/gigascience/gix022
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
http://dx.doi.org/10.1007/s10009-015-0392-z
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
-
Tools and data services registry: a community effort to document bioinformatics resources
PubMed citations: 49.
49 articles citing: Tools and data services registry: a community effort to document bioinformatics resources
Exploitation of epigenetic variation of crop wild relatives for crop improvement and agrobiodiversity preservation. PMID:35678824
BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations. PMID:35639735
Improving bioinformatics software quality through incorporation of software engineering practices. PMID:35111923
Implications of Membrane Binding by the Fe-S Cluster-Containing N-Terminal Domain in the Drosophila Mitochondrial Replicative DNA Helicase. PMID:34950192
Perspectives on automated composition of workflows in the life sciences. PMID:34804501
The role of metadata in reproducible computational research. PMID:34553169
3dRS, a Web-Based Tool to Share Interactive Representations of 3D Biomolecular Structures and Molecular Dynamics Trajectories. PMID:34485386
Bioimage analysis workflows: community resources to navigate through a complex ecosystem. PMID:34136134
Enabling One Health solutions through genomics. PMID:33906989
APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry. PMID:33720735
biotoolsSchema: a formalized schema for bioinformatics software description. PMID:33506265
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. PMID:33279989
On the lifetime of bioinformatics web services. PMID:33270886
Identification of the SUT Gene Family in Pomegranate (Punica granatum L.) and Functional Analysis of PgL0145810.1. PMID:32927615
Predicted therapeutic targets for COVID-19 disease by inhibiting SARS-CoV-2 and its related receptors. PMID:32835083
The structure and reactivity of the HoxEFU complex from the cyanobacterium Synechocystis sp. PCC 6803. PMID:32409585
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Cellular and Subcellular Compartmentation of the 2C-Methyl-D-Erythritol 4-Phosphate Pathway in the Madagascar Periwinkle. PMID:32272573
JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. PMID:31913853
Current RNA-seq methodology reporting limits reproducibility. PMID:31813948
DAISY: A Data Information System for accountability under the General Data Protection Regulation. PMID:31800037
The Dundee Resource for Sequence Analysis and Structure Prediction. PMID:31710725
Community curation of bioinformatics software and data resources. PMID:31624831
Recognizing software names in biomedical literature using machine learning. PMID:31566474
BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows. PMID:31506435
The bio.tools registry of software tools and data resources for the life sciences. PMID:31405382
Implementing the FAIR Data Principles in precision oncology: review of supporting initiatives. PMID:31263868
The EMBL-EBI search and sequence analysis tools APIs in 2019. PMID:30976793
Norwegian e-Infrastructure for Life Sciences (NeLS). PMID:30271575
Automated workflow composition in mass spectrometry-based proteomics. PMID:30060113
U-Index, a dataset and an impact metric for informatics tools and databases. PMID:29557976
mORCA: ubiquitous access to life science web services. PMID:29338691
Using bio.tools to generate and annotate workbench tool descriptions. PMID:29333231
Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia. PMID:29106479
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR. PMID:28781748
Four simple recommendations to encourage best practices in research software. PMID:28751965
A community proposal to integrate proteomics activities in ELIXIR. PMID:28713550
quantGenius: implementation of a decision support system for qPCR-based gene quantification. PMID:28545393
The EBI search engine: EBI search as a service-making biological data accessible for all. PMID:28472374
BioCIDER: a Contextualisation InDEx for biological Resources discovery. PMID:28407033
Ten simple rules for making research software more robust. PMID:28407023
ReGaTE: Registration of Galaxy Tools in Elixir. PMID:28402416
Bio-TDS: bioscience query tool discovery system. PMID:27924016
Ten Simple Rules for Developing Public Biological Databases. PMID:27832061
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. PMID:27803746
Top 10 metrics for life science software good practices. PMID:27635232
Making sense of big data in health research: Towards an EU action plan. PMID:27338147
Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability. PMID:27309738
BioShaDock: a community driven bioinformatics shared Docker-based tools registry. PMID:26913191 - http://dx.doi.org/10.1093/nar/gkv1116
- http://dx.doi.org/10.12688/f1000research.12974.1
- http://dx.doi.org/10.1093/gigascience/gix022
- http://dx.doi.org/10.1007/s10009-015-0392-z
Tags:
Tags
More detailed information about this field from each metasource.
software
metasource: Fairsharing.org
version: None
ontology and terminology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
bioinformatics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
data submission, annotation and curation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
computational biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644
Tags
More detailed information about this field from each metasource.
software
metasource: Fairsharing.orgversion: None
ontology and terminology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
bioinformatics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
data submission, annotation and curation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
computational biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:59.187644
software ontology and terminology bioinformatics data submission, annotation and curation computational biology
Need help integrating and/or managing biomedical data?