Glycosciences.de DB
Names
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Glycosciences.de DB
metasource: Fairsharing.org
version: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
SWEET-DB
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
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Glycosciences.de DB
metasource: Fairsharing.orgversion: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
SWEET-DB
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Glycosciences.de DB
metasource: Fairsharing.orgversion: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
SWEET-DB
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Glycan database with focus on carbohydrate 3D structures
Description
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Glycan database with focus on carbohydrate 3D structures
metasource: Fairsharing.orgversion: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Complex carbohydrates are known as mediators of complex cellular events. Concerning their structural diversity, their potential of information content is several orders of magnitude higher in a short sequence than any other biological macromolecule. SWEET-DB (http://www.glycosciences.de/database/) is an attempt to use modern Web techniques to annotate and/or cross-reference carbohydrate-related data collections which allow glycoscientists to find important data for compounds of interest in a compact and well-structured representation. Currently, reference data taken from three data sources can be retrieved for a given carbohydrate (sub)structure. The sources are CarbBank structures and literature references (linked to NCBI PubMed service), NMR data taken from SugaBase and 3D co-ordinates generated with SWEET-II. The main purpose of SWEET-DB is to enable an easy access to all data stored for one carbohydrate structure entering a complete sequence or parts thereof. Access to SWEET-DB contents is provided with the help of separate input spreadsheets for (sub)structures, bibliographic data, general structural data like molecular weight, NMR-spectra and biological data.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://www.glycosciences.de/database/Webpage
More detailed information about this field from each metasource.
http://www.glycosciences.de/database/
metasource: Fairsharing.orgversion: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research
PMID: 16239495
metasource: Fairsharing.org
version: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research
PMID: 16239495
metasource: Fairsharing.org
version: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
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GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research
PubMed citations: 84.
84 articles citing: GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research
Functions of Glycosylation and Related Web Resources for Its Prediction. PMID:35696078
Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans. PMID:35354826
The glycosylation in SARS-CoV-2 and its receptor ACE2. PMID:34782609
Informatics Ecosystems to Advance the Biology of Glycans. PMID:34626414
An Interactive View of Glycosylation. PMID:34611864
Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins. PMID:34611862
Putting the pieces together: mapping the O-glycoproteome. PMID:34358979
FGDB: Database of follicle stimulating hormone glycans. PMID:33897975
The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application. PMID:33677548
GAG-DB, the New Interface of the Three-Dimensional Landscape of Glycosaminoglycans. PMID:33322545
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy. PMID:33302373
Computational tools for drawing, building and displaying carbohydrates: a visual guide. PMID:33082879
Three-Dimensional Structures of Carbohydrates and Where to Find Them. PMID:33081008
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
An enzyme-based protocol for cell-free synthesis of nature-identical capsular oligosaccharides from Actinobacillus pleuropneumoniae serotype 1. PMID:32152227
Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37-45. PMID:31742764
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
The Pseudomonas aeruginosa lectin LecB binds to the exopolysaccharide Psl and stabilizes the biofilm matrix. PMID:31097723
GRITS Toolbox-a freely available software for processing, annotating and archiving glycomics mass spectrometry data. PMID:30913289
CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates. PMID:30689864
Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update). PMID:30357361
Glycomics@ExPASy: Bridging the Gap. PMID:30097532
Mapping Putative B-Cell Zika Virus NS1 Epitopes Provides Molecular Basis for Anti-NS1 Antibody Discrimination between Zika and Dengue Viruses. PMID:30023708
Glycoengineering of Mammalian Expression Systems on a Cellular Level. PMID:29532110
Bacterially derived synthetic mimetics of mammalian oligomannose prime antibody responses that neutralize HIV infectivity. PMID:29150603
High-throughput analysis of N-glycans using AutoTip via glycoprotein immobilization. PMID:28860471
Modeling of Oligosaccharides within Glycoproteins from Free-Energy Landscapes. PMID:28816453
Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank. PMID:28582506
Insights into the effects of glycosylation and the monosaccharide-binding activity of the plant lectin CrataBL. PMID:28299519
Strategies for carbohydrate model building, refinement and validation. PMID:28177313
The glycosylation of the extracellular loop of β2 subunits diversifies functional phenotypes of BK Channels. PMID:27690717
Rapid Screening of Bovine Milk Oligosaccharides in a Whey Permeate Product and Domestic Animal Milks by Accurate Mass Database and Tandem Mass Spectral Library. PMID:27428379
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. PMID:27296299
Glycosylation is crucial for a proper catalytic site organization in human glucocerebrosidase. PMID:27023912
Vina-Carb: Improving Glycosidic Angles during Carbohydrate Docking. PMID:26744922
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. PMID:26615188
GlycoMob: an ion mobility-mass spectrometry collision cross section database for glycomics. PMID:26314736
Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts. PMID:26286194
The Calcium Goes Meow: Effects of Ions and Glycosylation on Fel d 1, the Major Cat Allergen. PMID:26134118
Investigation of Carbohydrate Recognition via Computer Simulation. PMID:25927900
GlycoRDF: an ontology to standardize glycomics data in RDF. PMID:25388145
Crystal structure of the HIV neutralizing antibody 2G12 in complex with a bacterial oligosaccharide analog of mammalian oligomannose. PMID:25380763
EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data. PMID:25217575
Qrator: a web-based curation tool for glycan structures. PMID:25165068
Toolboxes for a standardised and systematic study of glycans. PMID:24564482
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. PMID:24495517
Introducing glycomics data into the Semantic Web. PMID:24280648
The carbohydrate-active enzymes database (CAZy) in 2013. PMID:24270786
Enzymatic basis for N-glycan sialylation: structure of rat α2,6-sialyltransferase (ST6GAL1) reveals conserved and unique features for glycan sialylation. PMID:24155237
Immobilization of thermostable β-galactosidase on epoxy support and its use for lactose hydrolysis and galactooligosaccharides biosynthesis. PMID:24122101
Recognition of bisecting N-acetylglucosamine: structural basis for asymmetric interaction with the mouse lectin dendritic cell inhibitory receptor 2. PMID:24108122
Crystal structure of anti-polysialic acid antibody single chain Fv fragment complexed with octasialic acid: insight into the binding preference for polysialic acid. PMID:24100042
Exploring site-specific N-glycosylation microheterogeneity of haptoglobin using glycopeptide CID tandem mass spectra and glycan database search. PMID:23829323
Soluble polysialylated NCAM: a novel player of the innate immune system in the lung. PMID:23619613
Allosteric modulation of the HIV-1 gp120-gp41 association site by adjacent gp120 variable region 1 (V1) N-glycans linked to neutralization sensitivity. PMID:23592978
Using databases and web resources for glycomics research. PMID:23325765
Molecular Characterization of Lipopolysaccharide Binding to Human α-1-Acid Glycoprotein. PMID:23316371
Software tools for glycan profiling. PMID:23296537
The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics. PMID:23271684
The use of glycoinformatics in glycochemistry. PMID:23015842
Decaleside: a new class of natural insecticide targeting tarsal gustatory sites. PMID:22955371
Function and 3D structure of the N-glycans on glycoproteins. PMID:22942711
Employment of tandem mass spectrometry for the accurate and specific identification of oligosaccharide structures. PMID:22867103
A Siglec-like sialic-acid-binding motif revealed in an adenovirus capsid protein. PMID:22522600
Harnessing glycomics technologies: integrating structure with function for glycan characterization. PMID:22522536
Structural and functional insights into endoglin ligand recognition and binding. PMID:22347366
Glycan Reader: automated sugar identification and simulation preparation for carbohydrates and glycoproteins. PMID:21815173
GlycomicsDB - A Data Integration Platform for Glycans and their Strucutres. PMID:21603090
Recent advances in the MS analysis of glycoproteins: Capillary and microfluidic workflows. PMID:21171110
EUROCarbDB: An open-access platform for glycoinformatics. PMID:21106561
GlycomeDB--a unified database for carbohydrate structures. PMID:21045056
SuperSweet--a resource on natural and artificial sweetening agents. PMID:20952410
A systematic approach to protein glycosylation analysis: a path through the maze. PMID:20852609
Functional network of glycan-related molecules: glyco-net in glycoconjugate data bank. PMID:20584338
Proteoglycomics: recent progress and future challenges. PMID:20450439
Bioinformatics and molecular modeling in glycobiology. PMID:20364395
Glycomic analysis: an array of technologies. PMID:19728746
Analysis and validation of carbohydrate three-dimensional structures. PMID:19171971
GlycomeDB - integration of open-access carbohydrate structure databases. PMID:18803830
Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans. PMID:18694500
An introduction to bioinformatics for glycomics research. PMID:18516240
GlycoMapsDB: a database of the accessible conformational space of glycosidic linkages. PMID:17202175
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de. PMID:17202164
GlyNest and CASPER: two independent approaches to estimate 1H and 13C NMR shifts of glycans available through a common web-interface. PMID:16845109
Tags:
Tags
More detailed information about this field from each metasource.
carbohydrate
metasource: Fairsharing.org
version: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
carbohydrates
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
carbohydrate
metasource: Fairsharing.orgversion: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: Glycosciences.de DB; Glycosciences.de DB; DOI: https://doi.org/10.25504/FAIRsharing.tfvd5r; Last edited: Jan. 24, 2020, 12:08 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
carbohydrates
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
carbohydrate structure structure carbohydrates
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